BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645338|ref|NP_207510.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(133 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207510.1| (NC_000915) conserved hypothetical protein... 266 3e-71
ref|NP_223372.1| (NC_000921) putative [Helicobacter pylori ... 259 3e-69
ref|NP_281845.1| (NC_002163) putative ATP /GTP-binding prot... 100 2e-21
ref|NP_229432.1| (NC_000853) conserved hypothetical protein... 61 2e-09
ref|NP_325951.1| (NC_002771) conserved hypothetical protein... 60 4e-09
ref|NP_296072.1| (NC_001263) conserved hypothetical protein... 60 5e-09
ref|NP_622207.1| (NC_003869) predicted ATPase or kinase [Th... 59 7e-09
ref|NP_219310.1| (NC_000919) conserved hypothetical protein... 58 2e-08
ref|NP_520661.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 54 4e-07
ref|NP_105810.1| (NC_002678) hypothetical protein [Mesorhiz... 52 9e-07
ref|NP_603826.1| (NC_003454) ATP/GTP hydrolase [Fusobacteri... 51 3e-06
ref|NP_465602.1| (NC_003210) similar to unknown proteins [L... 50 3e-06
ref|NP_563080.1| (NC_003366) conserved hypothetical protein... 50 3e-06
ref|NP_486340.1| (NC_003272) hypothetical protein [Nostoc s... 50 3e-06
ref|NP_471517.1| (NC_003212) similar to unknown proteins [L... 50 4e-06
ref|NP_646793.1| (NC_003923) conserved hypothetical protein... 50 6e-06
ref|NP_372576.1| (NC_002758) conserved hypothetical protein... 50 6e-06
ref|NP_359650.1| (NC_003103) unknown [Rickettsia conorii] >... 50 6e-06
ref|NP_438238.1| (NC_000907) conserved hypothetical protein... 49 1e-05
ref|NP_269758.1| (NC_002737) conserved hypothetical protein... 48 2e-05
ref|NP_245839.1| (NC_002663) unknown [Pasteurella multocida... 48 2e-05
ref|NP_388472.1| (NC_000964) similar to hypothetical protei... 47 3e-05
ref|NP_422328.1| (NC_002696) conserved hypothetical protein... 47 4e-05
ref|NP_220408.1| (NC_000963) unknown [Rickettsia prowazekii... 46 6e-05
ref|NP_607772.1| (NC_003485) conserved hypothetical protein... 46 6e-05
ref|NP_384143.1| (NC_003047) HYPOTHETICAL PROTEIN [Sinorhiz... 46 8e-05
ref|NP_290798.1| (NC_002655) orf, hypothetical protein [Esc... 45 1e-04
ref|NP_441837.1| (NC_000911) hypothetical protein [Synechoc... 45 1e-04
ref|NP_349442.1| (NC_003030) Predicted nucleotide-binding p... 45 1e-04
ref|NP_654188.1| (NC_003995) UPF0079, Uncharacterised P-loo... 45 1e-04
ref|NP_253635.1| (NC_002516) conserved hypothetical protein... 45 1e-04
ref|NP_463218.1| (NC_003197) putative nucleotide-binding pr... 45 2e-04
ref|NP_458793.1| (NC_003198) conserved hypothetical protein... 45 2e-04
ref|NP_404017.1| (NC_003143) conserved hypothetical protein... 44 3e-04
ref|NP_661044.1| (NC_002932) nucleotide-binding protein [Ch... 43 5e-04
ref|NP_273504.1| (NC_003112) conserved hypothetical protein... 43 7e-04
ref|NP_599825.1| (NC_003450) COG0802:Predicted ATPase or ki... 43 7e-04
ref|NP_284729.1| (NC_003116) conserved hypothetical protein... 43 7e-04
ref|NP_628905.1| (NC_003888) putative ATP/GTP binding prote... 42 0.001
ref|NP_217939.1| (NC_000962) hypothetical protein Rv3422c [... 42 0.001
ref|NP_346372.1| (NC_003028) conserved hypothetical protein... 41 0.002
ref|NP_298048.1| (NC_002488) conserved hypothetical protein... 41 0.003
ref|NP_220052.1| (NC_000117) (ATPase or Kinase) [Chlamydia ... 40 0.003
ref|NP_297197.1| (NC_002620) conserved hypothetical protein... 40 0.003
ref|NP_241411.1| (NC_002570) BH0545~unknown conserved prote... 40 0.004
ref|NP_642723.1| (NC_003919) conserved hypothetical protein... 40 0.006
ref|NP_212320.1| (NC_001318) conserved hypothetical protein... 39 0.008
ref|NP_637655.1| (NC_003902) conserved hypothetical protein... 39 0.008
ref|NP_224853.1| (NC_000922) YjeE hypothetical protein [Chl... 39 0.010
ref|NP_229997.1| (NC_002505) conserved hypothetical protein... 39 0.010
>ref|NP_207510.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||D64609 conserved hypothetical protein HP0716 - Helicobacter pylori
(strain 26695)
gb|AAD07766.1| (AE000584) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 133
Score = 266 bits (680), Expect = 3e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH
Sbjct: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
Query: 61 AYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVK 120
AYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVK
Sbjct: 61 AYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVK 120
Query: 121 TESTSRFYTIKIA 133
TESTSRFYTIKIA
Sbjct: 121 TESTSRFYTIKIA 133
>ref|NP_223372.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71905 hypothetical protein jhp0654 - Helicobacter pylori (strain J99)
gb|AAD06230.1| (AE001497) putative [Helicobacter pylori J99]
Length = 133
Score = 259 bits (663), Expect = 3e-69
Identities = 129/133 (96%), Positives = 131/133 (97%)
Query: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH
Sbjct: 1 MRANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMH 60
Query: 61 AYSESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVK 120
AYSESVFHYDFYM DL+ CLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVE+K
Sbjct: 61 AYSESVFHYDFYMRDLETCLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEIK 120
Query: 121 TESTSRFYTIKIA 133
TESTSRFYTIKIA
Sbjct: 121 TESTSRFYTIKIA 133
>ref|NP_281845.1| (NC_002163) putative ATP /GTP-binding protein [Campylobacter
jejuni]
pir||D81337 probable ATP /GTP-binding protein Cj0668 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB72945.1| (AL139076) putative ATP /GTP-binding protein [Campylobacter jejuni]
Length = 135
Score = 100 bits (250), Expect = 2e-21
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 3/113 (2%)
Query: 21 KGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFYMHDLK 77
+GVVLL+G + SGKT+LVQA +K LGLD++ SPTFS M Y ++HYD Y L+
Sbjct: 21 EGVVLLQGDLASGKTSLVQAWVKFLGLDVRVDSPTFSTMQKYENHDICIYHYDIYQEGLE 80
Query: 78 ACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVKTESTSRFYTI 130
L G+ E EKG+H VEWG E L+K L K+ ++ +++ + R Y I
Sbjct: 81 GLLANGLFENFFEKGLHLVEWGGENLKKTLMKFGISTIQIKISIKDDKRKYEI 133
>ref|NP_229432.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||H72229 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36699.1|AE001806_9 (AE001806) conserved hypothetical protein [Thermotoga maritima]
Length = 161
Score = 61.2 bits (147), Expect = 2e-09
Identities = 41/101 (40%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Query: 6 DELDKVAAAILKDDFKG--VVLLKGVVGSGKTTLVQACLKHLGLDIQ-ATSPTFSLMHAY 62
+E K A IL ++ KG VV+L G +G+GKTT V+ ++ +GLD + SPTF+LM+ Y
Sbjct: 11 EEQLKRLAKILTENLKGGEVVILSGNLGAGKTTFVKGMIRAIGLDEKMVKSPTFTLMNVY 70
Query: 63 S--ESVFHYDFYMHDLKACLELGMLECLL-EKGIHFVEWGD 100
++++H D Y L L + + L E GI VEWGD
Sbjct: 71 PGLKTIYHLDLYRLQDTDFLSLDVEDILEDEDGIMVVEWGD 111
>ref|NP_325951.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13293.1| (AL445563) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 130
Score = 60.1 bits (144), Expect = 4e-09
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 4 NLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS 63
NLD++++V I+ ++LL G VGSGKTTLVQ K L + TSP+F++M Y
Sbjct: 9 NLDQIEQVVDLIMPIIKNKILLLDGEVGSGKTTLVQHIAKKLNIKETITSPSFNIMKIYP 68
Query: 64 ESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV-VEVKTE 122
V H D Y + +L E E I +EW +K+ KK + + ++ +
Sbjct: 69 NLV-HLDLYNYQ----GDLDEFEDFFEDNIVVIEWS----KKLAKKPKNFVHIEIKYDQK 119
Query: 123 STSRFYTIK 131
+ R Y IK
Sbjct: 120 NNQRIYEIK 128
>ref|NP_296072.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75283 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF11897.1|AE002066_1 (AE002066) conserved hypothetical protein [Deinococcus radiodurans]
Length = 148
Score = 59.7 bits (143), Expect = 5e-09
Identities = 38/101 (37%), Positives = 55/101 (53%), Gaps = 5/101 (4%)
Query: 5 LDELDKVAAAILKDDFKGVVL-LKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS 63
+DE + AA+ + G VL L+G +G+GKTTL Q L LG D TSPT++LM Y
Sbjct: 18 VDEQRALGAALARALAPGSVLFLEGELGAGKTTLTQGLLAALGFDGHVTSPTYALMQLYP 77
Query: 64 ES---VFHYDFY-MHDLKACLELGMLECLLEKGIHFVEWGD 100
S V H D Y + D+ E+ + E + + +EWG+
Sbjct: 78 ASAGQVLHVDAYRVRDVAELYEMDLDELIAGSRLSVIEWGE 118
>ref|NP_622207.1| (NC_003869) predicted ATPase or kinase [Thermoanaerobacter
tengcongensis]
gb|AAM23811.1| (AE013024) predicted ATPase or kinase [Thermoanaerobacter
tengcongensis]
Length = 151
Score = 59.3 bits (142), Expect = 7e-09
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 9 DKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY--SESV 66
+K+ + K D +VLL G +GSGKT + K LG++ + TSPTF+L++ Y E
Sbjct: 17 EKLGKLLKKGD---IVLLYGDLGSGKTVFAKGIGKGLGIEGEVTSPTFTLVNEYHGREKF 73
Query: 67 FHYDFY-MHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVKTESTS 125
+H+D Y + D E+G E + + VEW E+L ++ K L + ++E E
Sbjct: 74 YHFDLYRIDDYAELYEIGYEEYFYNEAVCAVEW-PERLGPLIPKERLEV-LIEKGEEEDL 131
Query: 126 RFYTI 130
R T+
Sbjct: 132 RIITL 136
>ref|NP_219310.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83845|Y875_TREPA Hypothetical protein TP0875
pir||A71271 conserved hypothetical protein TP0875 - syphilis spirochete
gb|AAC65838.1| (AE001257) conserved hypothetical protein [Treponema pallidum]
Length = 135
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/97 (32%), Positives = 56/97 (56%), Gaps = 4/97 (4%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVFHYDFY-MHDLKAC 79
VV+L+G + +GKT V+ LG+ + TSPTF+L+ Y +++H D Y + L+
Sbjct: 27 VVVLQGALAAGKTCFVKGLALGLGIQEEITSPTFTLLAVYHGRLTLYHMDVYRLASLEDF 86
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
++G EC+ G+ +EWG E++ L +Y + I +
Sbjct: 87 FDIGAQECVYGTGVCVIEWG-ERVASELPEYTVTISL 122
>ref|NP_520661.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD16247.1| (AL646070) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 198
Score = 53.5 bits (127), Expect = 4e-07
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY-------SESVFHYDFYMH-D 75
V L G +G+GKTTL +A L LG + SPT++L+ Y ++ V+H+D Y D
Sbjct: 60 VQLSGDLGAGKTTLSRAILHGLGHTGRVRSPTYTLVEPYEVPGASGTQKVYHFDLYRFVD 119
Query: 76 LKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAI 114
+ + G +C E + VEW EK + +L DL I
Sbjct: 120 PEEWTDAGFRDCFAEPALCLVEW-PEKAQALLGTPDLHI 157
>ref|NP_105810.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51596.1| (AP003005) hypothetical protein [Mesorhizobium loti]
Length = 503
Score = 52.4 bits (124), Expect = 9e-07
Identities = 38/101 (37%), Positives = 57/101 (55%), Gaps = 7/101 (6%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLD--IQATSPTFSLMHAYSE--SVFHYDFY-MHDLK 77
V+ LKG +G+GK+TL +A ++ L D + SPTF+L+ +Y V H+D Y +
Sbjct: 32 VLALKGDLGAGKSTLARALIRALADDAGLDVPSPTFTLVQSYDTRIPVHHFDLYRLSSAS 91
Query: 78 ACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVE 118
ELG E L + G VEW D + E L K L+I++V+
Sbjct: 92 ELDELGFDEALTQ-GAALVEWPD-RAEGYLPKTTLSIELVQ 130
>ref|NP_603826.1| (NC_003454) ATP/GTP hydrolase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95125.1| (AE010600) ATP/GTP hydrolase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 153
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 5 LDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE 64
+DEL K A ++++ V+ L G +G+GKTT + K G+ SPTF+ + Y
Sbjct: 10 IDELAKKLANYVEENT--VIALIGELGTGKTTFTKTFAKEFGVKENLKSPTFNYVLEYLS 67
Query: 65 S---VFHYDFY-MHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKY 110
++H+D Y + + + E+G + + G+ +EW + LE + K+Y
Sbjct: 68 GRMPLYHFDVYRLCNSEEIYEIGYEDYINNGGVALIEWANIILEDLPKEY 117
>ref|NP_465602.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAD00156.1| (AL591982) similar to unknown proteins [Listeria monocytogenes]
Length = 153
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFYMHDLKAC 79
V+LL+G +G+GKTT + + L + SPTF+++ Y + ++H D Y + +
Sbjct: 29 VILLEGDLGAGKTTFTKGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDVYRLEDTSA 88
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEV 119
ELG+ E G+ VEW E + ++Y L IK+ +
Sbjct: 89 DELGLEEYFYGAGVSVVEWAQFVREDLPEEY-LEIKLFHI 127
>ref|NP_563080.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81870.1| (AP003193) conserved hypothetical protein [Clostridium perfringens]
Length = 154
Score = 50.4 bits (119), Expect = 3e-06
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE---SVFHYDFY-MHDLKA 78
++ L G +G+GKT + + + LG+D TSPTF++++ Y +++H+D Y ++D
Sbjct: 27 ILCLTGDLGTGKTHISKGIAEGLGIDEHITSPTFNIVNEYHSGRLTLYHFDVYRVNDPDE 86
Query: 79 CLELGMLECLLEKGIHFVEWGDEKLEKILKKY 110
+G E + G+ +EW + E I ++Y
Sbjct: 87 IEAIGFDEYIFGDGVSLIEWANYIEELIPEEY 118
>ref|NP_486340.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
sp|O52749|YN00_ANASP Hypothetical protein alr2300
gb|AAC03104.1| (AF046871) unknown [Nostoc sp. PCC 7120]
dbj|BAB73999.1| (AP003589) ORF_ID:alr2300~hypothetical protein [Nostoc sp. PCC
7120]
Length = 162
Score = 50.4 bits (119), Expect = 3e-06
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFYMHDLKAC 79
V+LL+G +G+GKTTLVQ K L + SPTF+L++ Y+E ++H D Y + +
Sbjct: 38 VILLEGDLGAGKTTLVQGLGKGLSITEPIVSPTFTLINEYTEGRIPLYHLDLYRLEPQEV 97
Query: 80 LELGMLECLLE-----KGIHFVEWGD 100
L L LE E GI +EW +
Sbjct: 98 LSLN-LEIYWEGIEIIPGIVAIEWSE 122
>ref|NP_471517.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC97413.1| (AL596171) similar to unknown proteins [Listeria innocua]
Length = 153
Score = 50.1 bits (118), Expect = 4e-06
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFYMHDLKAC 79
V+LL+G +G+GKTT + + L + SPTF+++ Y + ++H D Y + +
Sbjct: 29 VILLEGDLGAGKTTFTKGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDVYRLEDAST 88
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEV 119
ELG+ E G+ VEW E + ++Y L IK+ +
Sbjct: 89 DELGLEEYFYGAGVSVVEWAQFVREDLPEEY-LEIKLFHI 127
>ref|NP_646793.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95841.1| (AP004829) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 153
Score = 49.7 bits (117), Expect = 6e-06
Identities = 36/117 (30%), Positives = 65/117 (54%), Gaps = 6/117 (5%)
Query: 4 NLDELDKVAAAILKDDFKG-VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY 62
NLDE+++ A +++ G ++LL G +G+GKTTL Q K LG+ SPTF+++ +Y
Sbjct: 6 NLDEMNQFAIFLVEQLKSGDLILLNGDLGAGKTTLTQFIGKALGVRRTINSPTFNIIKSY 65
Query: 63 ---SESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+ + H D Y + + +LG E ++ I +EW + ++ +L L+I +
Sbjct: 66 RGKNLKLHHMDCYRLE-DSDEDLGFDEFFEDQAITVIEW-SQFIKDLLPATHLSINI 120
>ref|NP_372576.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375160.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB43139.1| (AP003136) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58214.1| (AP003364) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 153
Score = 49.7 bits (117), Expect = 6e-06
Identities = 36/117 (30%), Positives = 65/117 (54%), Gaps = 6/117 (5%)
Query: 4 NLDELDKVAAAILKDDFKG-VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY 62
NLDE+++ A +++ G ++LL G +G+GKTTL Q K LG+ SPTF+++ +Y
Sbjct: 6 NLDEMNQFAMFLVEQLKSGDLILLNGDLGAGKTTLTQFIGKALGVRRTINSPTFNIIKSY 65
Query: 63 ---SESVFHYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+ + H D Y + + +LG E ++ I +EW + ++ +L L+I +
Sbjct: 66 RGKNLKLHHMDCYRLE-DSDEDLGFDEFFEDQAITVIEW-SQFIKDLLPATHLSINI 120
>ref|NP_359650.1| (NC_003103) unknown [Rickettsia conorii]
sp|Q92JQ4|Y013_RICCN Hypothetical protein RC0013
gb|AAL02551.1| (AE008570) unknown [Rickettsia conorii]
Length = 175
Score = 49.7 bits (117), Expect = 6e-06
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 4 NLDELDKVAAAILKDDFK--GVVLLKGVVGSGKTTLVQACLKHL-GLDIQATSPTFSLMH 60
N +E K A +L K +VLL G +G+GKT + +K+ G + SPTF+L+
Sbjct: 5 NSEEETKKLAKLLAQSLKPNDIVLLNGDLGAGKTFFCREIIKYFCGENTSIISPTFNLLQ 64
Query: 61 AYSES---VFHYDFY-MHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
Y S ++HYD Y + + ELG E L + +EW + + K+ L +
Sbjct: 65 TYKASNFTIYHYDLYRLKSPEEIYELGFEEA-LNGNLILIEWSE------IIKHLLTPPL 117
Query: 117 VEVKTES 123
+EV E+
Sbjct: 118 IEVNLEA 124
>ref|NP_438238.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44492|YJEE_HAEIN Protein HI0065
pir||H64141 hypothetical protein HI0065 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21743.1| (U32692) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 158
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/98 (29%), Positives = 54/98 (54%), Gaps = 5/98 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS---ESVFHYDFY-MHDLKA 78
+V L G +G+GKTTL + L+ +G SPT++L+ Y+ + ++H+D Y + D +
Sbjct: 35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94
Query: 79 CLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+G+ + I +EW EK + IL + D+ + +
Sbjct: 95 LEFMGIRDYFNTDSICLIEW-SEKGQGILPEADILVNI 131
>ref|NP_269758.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34479.1| (AE006602) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 153
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVFHYDFY-MHDLKAC 79
V++L G +G+GKTTL + K +G+ SPT++++ Y ++H D Y + D
Sbjct: 26 VIVLSGDLGAGKTTLAKGIAKGMGISQMIKSPTYTIVREYEGRLPLYHLDIYRVGDDPDS 85
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKY 110
++L + L G+ +EWG+ E +L+ Y
Sbjct: 86 IDLD--DFLFGNGVTVIEWGELLGEGLLQDY 114
>ref|NP_245839.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02986.1| (AE006129) unknown [Pasteurella multocida]
Length = 165
Score = 48.1 bits (113), Expect = 2e-05
Identities = 31/97 (31%), Positives = 54/97 (54%), Gaps = 5/97 (5%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY---SESVFHYDFY-MHDLKAC 79
V L G +G+GKTTL + ++ LG SPT++L+ Y +++V+H+D Y + D +
Sbjct: 39 VYLNGDLGAGKTTLSRGIIQALGHRGNVKSPTYTLVEEYHLPTKTVYHFDLYRLSDPEEL 98
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+G+ + + +EW EK + IL + DL I +
Sbjct: 99 EFMGIRDYFNANCLCLIEWA-EKGQGILSEADLLINI 134
>ref|NP_388472.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O05515|YDIB_BACSU Hypothetical protein ydiB
pir||C69786 conserved hypothetical protein ydiB - Bacillus subtilis
dbj|BAA19715.1| (D88802) E. coli hypothetical protein; P31805 (267) [Bacillus
subtilis]
emb|CAB12410.1| (Z99107) similar to hypothetical proteins [Bacillus subtilis]
Length = 158
Score = 47.4 bits (111), Expect = 3e-05
Identities = 33/111 (29%), Positives = 59/111 (52%), Gaps = 14/111 (12%)
Query: 10 KVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESV--- 66
K+ AA K V+ L+G +G+GKTT + + LG+ SPTF+++ Y++ V
Sbjct: 19 KLTAAFAKPG--DVLTLEGDLGAGKTTFTKGFAEGLGITRIVNSPTFTIIKEYNDGVLPL 76
Query: 67 FHYDFYMHDLKACLELGMLECLLEKGIHFVEWG--------DEKLEKILKK 109
+H D Y + ++ +LG+ E +G+ VEW E+L+ ++K+
Sbjct: 77 YHMDVYRMEDES-EDLGLDEYFHGQGVCLVEWAHLIEEQLPQERLQIVIKR 126
>ref|NP_422328.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25496.1| (AE006012) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 148
Score = 47.0 bits (110), Expect = 4e-05
Identities = 33/96 (34%), Positives = 53/96 (54%), Gaps = 7/96 (7%)
Query: 26 LKGVVGSGKTTLVQACLKHLGL-DIQATSPTFSLMHAYSESVF---HYDFY-MHDLKACL 80
L G +G+GK+TL +A ++ L D + SPTF+L+ Y F H+D Y + D
Sbjct: 31 LTGPLGAGKSTLARALIRALTTPDEEVPSPTFTLVQFYETPAFPLAHFDLYRLSDPDEAY 90
Query: 81 ELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
E+G+ E L+ G+ +EW ++LE L + L I +
Sbjct: 91 EIGLDEA-LDDGVALIEW-PQRLEGRLPRTRLDIDI 124
>ref|NP_220408.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZED0|Y013_RICPR Hypothetical protein RP013
pir||F71708 hypothetical protein RP013 - Rickettsia prowazekii
emb|CAA14485.1| (AJ235270) unknown [Rickettsia prowazekii]
Length = 144
Score = 46.2 bits (108), Expect = 6e-05
Identities = 28/83 (33%), Positives = 44/83 (52%), Gaps = 6/83 (7%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHL-GLDIQATSPTFSLMHAYSE---SVFHYDFY-MHDLK 77
+VLL G +G+GKT + +KH G + SPTF+L+ Y +++HYD Y + +
Sbjct: 26 IVLLNGDLGAGKTFFCREIIKHFCGKNTNIISPTFNLLQIYKTPKFNIYHYDMYRIKSPE 85
Query: 78 ACLELGMLECLLEKGIHFVEWGD 100
ELG E L + +EW +
Sbjct: 86 EIYELGFEEA-LNGNLILIEWSE 107
>ref|NP_607772.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98271.1| (AE010084) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 153
Score = 46.2 bits (108), Expect = 6e-05
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVFHYDFY-MHDLKAC 79
V++L G +G+GKTTL + K +G+ SPT++++ Y ++H D Y + D
Sbjct: 26 VIVLSGDLGAGKTTLAKGIAKGMGISQMIKSPTYTIVREYEGRLPLYHLDIYRVGDDPDS 85
Query: 80 LELGMLECLLEKGIHFVEWGDEKLEKILKKY 110
++L + L G+ +EWG+ E +L+ +
Sbjct: 86 IDLD--DFLFGNGVTVIEWGELLGEGLLQDH 114
>ref|NP_384143.1| (NC_003047) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41424.1| (AL591782) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 504
Score = 45.8 bits (107), Expect = 8e-05
Identities = 34/89 (38%), Positives = 50/89 (55%), Gaps = 7/89 (7%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLD--IQATSPTFSLMHAYS--ESVFHYDFY-MHDLKA 78
V L G +G+GK+T +A ++ + D ++ SPTF+L+ +Y V H+D Y + D
Sbjct: 31 VALSGDLGAGKSTFARAFIRAMADDETLEVPSPTFTLVQSYDLRIPVAHFDLYRLADASE 90
Query: 79 CLELGMLECLLEKGIHFVEWGDEKLEKIL 107
ELG E L + GI VEW EK E+ L
Sbjct: 91 LDELGFDEALAD-GICLVEW-PEKAEEAL 117
>ref|NP_290798.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_313171.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_418589.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P31805|YJEE_ECOLI Hypothetical protein yjeE
pir||S56393 hypothetical 16.9K protein (psd-amiB intergenic region) -
Escherichia coli
gb|AAA20096.1| (L19346) urf2 [Escherichia coli]
gb|AAA97064.1| (U14003) urf2 of GenBank Accession Number L19346 [Escherichia coli]
gb|AAC77125.1| (AE000489) orf, hypothetical protein [Escherichia coli K12]
gb|AAG59364.1|AE005650_3 (AE005650) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB38567.1| (AP002568) hypothetical protein [Escherichia coli O157:H7]
Length = 153
Score = 45.4 bits (106), Expect = 1e-04
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 7/101 (6%)
Query: 2 RANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHA 61
+A LD ++VA A D V+ L G +G+GKTT + L+ LG SPT++L+
Sbjct: 12 QATLDLGERVAKAC---DGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVEP 68
Query: 62 YSES---VFHYDFY-MHDLKACLELGMLECLLEKGIHFVEW 98
Y+ V+H+D Y + D + +G+ + I VEW
Sbjct: 69 YTLDNLMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEW 109
>ref|NP_441837.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P74415|Y257_SYNY3 Hypothetical protein sll0257
pir||S76256 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18515.1| (D90914) ORF_ID:sll0257~hypothetical protein [Synechocystis sp.
PCC 6803]
Length = 157
Score = 45.4 bits (106), Expect = 1e-04
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFY 72
++LL+G +G+GKT+LVQ + LG+ + SPTF++++ Y E ++H D Y
Sbjct: 32 IILLQGDLGAGKTSLVQGLGRGLGITGEIVSPTFTIVNEYREGKMPLYHLDLY 84
>ref|NP_349442.1| (NC_003030) Predicted nucleotide-binding protein, YjeE family
[Clostridium acetobutylicum]
gb|AAK80782.1|AE007781_5 (AE007781) Predicted nucleotide-binding protein, YjeE family
[Clostridium acetobutylicum]
Length = 152
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/98 (27%), Positives = 49/98 (49%), Gaps = 11/98 (11%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVFHYDFY-MHDLKAC 79
+V + G +G+GKT + K L ++ TSPTF++++ Y+ + H+D Y ++D
Sbjct: 27 IVCINGDLGAGKTHFTKGIAKGLNIEDYITSPTFNIVNEYTGRLKLHHFDVYRVNDPDEI 86
Query: 80 LELGMLECLLEKGIHFVEWG--------DEKLEKILKK 109
+G E + + +EW DE +E +KK
Sbjct: 87 YAIGFDEYIFSDAVSVIEWSHYISSIIPDEHIEVNIKK 124
>ref|NP_654188.1| (NC_003995) UPF0079, Uncharacterised P-loop hydrolase UPF0079
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 157
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/78 (34%), Positives = 43/78 (54%), Gaps = 3/78 (3%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVFHYDFYMHDLKACL 80
V++L+G +G+GKTT + K LG+ SPTF+++ Y ++H D Y ++
Sbjct: 30 VIILEGDLGAGKTTFTKGLAKGLGVKRVVNSPTFNIIKEYKGRLPLYHMDVY-RLAESEE 88
Query: 81 ELGMLECLLEKGIHFVEW 98
+LG E +GI VEW
Sbjct: 89 DLGFDEYFYGEGITVVEW 106
>ref|NP_253635.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H83028 conserved hypothetical protein PA4948 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08333.1|AE004907_11 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 155
Score = 45.1 bits (105), Expect = 1e-04
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 21 KGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSES---VFHYDFY-MHDL 76
+GV+ L G +G+GKTTL + L+ LG SPTF+L+ Y +H+D Y + D
Sbjct: 28 QGVIYLHGDLGAGKTTLSRGILRGLGHAGSVKSPTFTLVEPYEIGELRAYHFDLYRLADA 87
Query: 77 KACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
+ G+ + + +EW E+ +L DL I +
Sbjct: 88 EELEFFGIRDYFDGSALCLIEW-PERGAGVLPTADLDITI 126
>ref|NP_463218.1| (NC_003197) putative nucleotide-binding protein [Salmonella
typhimurium LT2]
gb|AAL23177.1| (AE008904) putative nucleotide-binding protein [Salmonella
typhimurium LT2]
Length = 153
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 7/101 (6%)
Query: 2 RANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHA 61
+A LD +VA A D V+ L G +G+GKTT + L+ LG + SPT++L+
Sbjct: 12 QATLDLGQRVANAC---DGATVIYLYGDLGAGKTTFSRGFLQALGHNGNVKSPTYTLVEP 68
Query: 62 Y---SESVFHYDFY-MHDLKACLELGMLECLLEKGIHFVEW 98
Y + V+H+D Y + D + +G+ + I VEW
Sbjct: 69 YAIDNMMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEW 109
>ref|NP_458793.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD06834.1| (AL627283) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 153
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 7/101 (6%)
Query: 2 RANLDELDKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHA 61
+A LD +VA A D V+ L G +G+GKTT + L+ LG + SPT++L+
Sbjct: 12 QATLDLGQRVANAC---DGATVIYLYGDLGAGKTTFSRGFLQALGHNGNVKSPTYTLVEP 68
Query: 62 Y---SESVFHYDFY-MHDLKACLELGMLECLLEKGIHFVEW 98
Y + V+H+D Y + D + +G+ + I VEW
Sbjct: 69 YALDNMMVYHFDLYRLADPEELEFMGIRDYFANDAICLVEW 109
>ref|NP_404017.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89228.1| (AJ414142) conserved hypothetical protein [Yersinia pestis]
Length = 156
Score = 43.9 bits (102), Expect = 3e-04
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 6 DELDKVA-AAILKDDFKG--VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY 62
DE VA A L F G V+ L G +G+GKTT + L+ LG + SPT++L+ Y
Sbjct: 10 DEAATVALGATLAQAFGGASVIYLFGDLGAGKTTFSRGFLQALGHNGHVKSPTYTLVEPY 69
Query: 63 S---ESVFHYDFY-MHDLKACLELGMLECLLEKGIHFVEW 98
+ V+H+D Y + D + +G+ + + I VEW
Sbjct: 70 TLTPRPVYHFDLYRLADPEELEFMGIRDYFDPQAICLVEW 109
>ref|NP_661044.1| (NC_002932) nucleotide-binding protein [Chlorobium tepidum TLS]
gb|AAM71386.1| (AE012792) nucleotide-binding protein [Chlorobium tepidum TLS]
Length = 142
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 9/101 (8%)
Query: 24 VLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE-------SVFHYDFY-MHD 75
V L G +G+GKT ++ + G + Q +SPTFSLM+ Y + H+D Y +
Sbjct: 30 VCLTGPLGAGKTEFMRGITEAFGCEEQLSSPTFSLMNIYEGLLRGQPFELHHFDLYRLES 89
Query: 76 LKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
K G + L + VEWG E+ + ++Y +++
Sbjct: 90 EKELDSAGFDDYLSGPFLSVVEWG-ERFASLDRRYTRRVQL 129
>ref|NP_273504.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81198 conserved hypothetical protein NMB0457 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40894.1| (AE002401) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 153
Score = 42.7 bits (99), Expect = 7e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVF---HYDFYMHDL-KA 78
V+ L+G +G+GKTTL + L+ LG SPT++++ +Y F H+D Y +
Sbjct: 33 VIYLEGDLGAGKTTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEE 92
Query: 79 CLELGMLECLLEKGIHFVEW 98
+ G+ E + +EW
Sbjct: 93 WEDAGLDELFAANSVCLIEW 112
>ref|NP_599825.1| (NC_003450) COG0802:Predicted ATPase or kinase [Corynebacterium
glutamicum]
dbj|BAB97982.1| (AP005275) Predicted ATPase or kinase [Corynebacterium glutamicum
ATCC 13032]
Length = 165
Score = 42.7 bits (99), Expect = 7e-04
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESV-----FHYDFYM---H 74
VV+L G +G+GKTT Q + L + + TSPTF + + + H D Y
Sbjct: 35 VVILDGPLGAGKTTFTQGIARGLQVKGRVTSPTFVIAREHRSEIGGPDLIHMDAYRLLGE 94
Query: 75 DLKACLELGMLECL-----LEKGIHFVEWGDEKLEKILKKYDLAI----KVVEVKTESTS 125
D + +G L+ L L+ + EWG +E+I Y L V+ ES +
Sbjct: 95 DSEDADPIGALDSLDLDTDLDLAVVVAEWGGGLVEQIADSYLLITIDRETAVQEDPESEA 154
Query: 126 RFY 128
R +
Sbjct: 155 RIF 157
>ref|NP_284729.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||F81832 conserved hypothetical protein NMA2027 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85246.1| (AL162757) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 153
Score = 42.7 bits (99), Expect = 7e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSESVF---HYDFYMHDL-KA 78
V+ L+G +G+GKTTL + L+ LG SPT++++ +Y F H+D Y +
Sbjct: 33 VIYLEGDLGAGKTTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEE 92
Query: 79 CLELGMLECLLEKGIHFVEW 98
+ G+ E + +EW
Sbjct: 93 WEDAGLDELFAANSVCLIEW 112
>ref|NP_628905.1| (NC_003888) putative ATP/GTP binding protein [Streptomyces
coelicolor A3(2)]
sp|O86788|YBE7_STRCO Hypothetical protein SCO4747
pir||T35576 probable ATP/GTP binding protein - Streptomyces coelicolor
emb|CAA20403.1| (AL031317) putative ATP/GTP binding protein [Streptomyces
coelicolor A3(2)]
Length = 148
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/97 (30%), Positives = 46/97 (46%), Gaps = 20/97 (20%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY-----SESVFHYDFY----- 72
+V+L G +G+GKTTL + + LG+ TSPTF + + + H D Y
Sbjct: 17 LVMLSGELGAGKTTLTRGLGEGLGVRGAVTSPTFVIARVHPSLGDGPPLVHVDAYRLSGG 76
Query: 73 ---MHDLKACLELGMLECLLEKGIHFVEWGDEKLEKI 106
M DL L+ L + VEWG+ K+E++
Sbjct: 77 LDEMEDLD-------LDVSLSDSVIVVEWGEGKVEEL 106
>ref|NP_217939.1| (NC_000962) hypothetical protein Rv3422c [Mycobacterium
tuberculosis H37Rv]
ref|NP_338055.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
sp|Q50706|YY22_MYCTU Hypothetical protein Rv3422c
pir||C70738 hypothetical protein Rv3422c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB01034.1| (Z77165) hypothetical protein Rv3422c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47869.1| (AE007158) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 168
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY------SESVFHYDFY---- 72
VV+L G +G+GKT L + + ++ TSPTF L + + ++ H D Y
Sbjct: 46 VVVLSGPLGAGKTVLAKGIAMAMDVEGPITSPTFVLARMHRPRRPGTPAMVHVDVYRLLD 105
Query: 73 --MHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKVVEVKTEST 124
DL + L+ L+ LE + VEWG+ E++ +++ L +++ V T
Sbjct: 106 HNSADLLSELDSLDLDTDLEDAVVVVEWGEGLAERLSQRH-LDVRLERVSHSDT 158
>ref|NP_346372.1| (NC_003028) conserved hypothetical protein TIGR00150 [Streptococcus
pneumoniae TIGR4]
ref|NP_359353.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK76012.1| (AE007484) conserved hypothetical protein TIGR00150 [Streptococcus
pneumoniae TIGR4]
gb|AAL00564.1| (AE008540) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 147
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/94 (26%), Positives = 49/94 (51%), Gaps = 6/94 (6%)
Query: 9 DKVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SV 66
+++ + K+D V++L G +G+GKTT + K L + SPT++++ Y +
Sbjct: 14 ERLGHLLAKND---VLILTGELGAGKTTFTKGLAKGLQISQMIKSPTYTIVREYEGRLPL 70
Query: 67 FHYDFYMHDLKACLELGMLECLLEKGIHFVEWGD 100
+H D Y + A + + E + G+ +EWG+
Sbjct: 71 YHLDVYRIEGDAD-SIDLDEFIFGGGVTVIEWGN 103
>ref|NP_298048.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||C82765 conserved hypothetical protein XF0758 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83568.1|AE003917_2 (AE003917) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 162
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY----SESVFHYDFYMHDLKA 78
V+ L+G +G+GK+TL +A L+ LG+ SPT++L+ Y +H D Y A
Sbjct: 28 VLSLQGDIGAGKSTLARALLRALGVTGAIRSPTYTLVERYVLADGGEAWHLDLYRIGNAA 87
Query: 79 CLE-LGMLECLLEKGIHFVEWGDEKLEKILKKYDLAI 114
L+ LG+ E E + VEW E+ L +DL +
Sbjct: 88 ELDFLGLDED--EVVLWLVEW-PERGAGALPSFDLEV 121
>ref|NP_220052.1| (NC_000117) (ATPase or Kinase) [Chlamydia trachomatis]
pir||H71502 probable (ATPase or kinase) - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68139.1| (AE001324) (ATPase or Kinase) [Chlamydia trachomatis]
Length = 157
Score = 40.4 bits (93), Expect = 0.003
Identities = 26/57 (45%), Positives = 31/57 (53%), Gaps = 8/57 (14%)
Query: 23 VVLLKGVVGSGKTT----LVQACLKHLGLDIQATSPTFSLMHAY---SESVFHYDFY 72
VVLL G GSGKT +VQ L +D Q SP+F+L+H Y V HYD Y
Sbjct: 30 VVLLSGDYGSGKTEFVRGIVQGFLGEAAVD-QVASPSFALLHVYEAGGRRVCHYDLY 85
>ref|NP_297197.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||A81660 conserved hypothetical protein TC0824 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39625.1| (AE002349) conserved hypothetical protein [Chlamydia muridarum]
Length = 157
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 23 VVLLKGVVGSGKTTLVQACLK-HLGLDI--QATSPTFSLMHAY---SESVFHYDFY-MHD 75
VVLL G G+GKT V+ ++ LG Q SP+FSL+H Y V HYD Y +
Sbjct: 30 VVLLSGDYGAGKTEFVRGIVQGFLGETAVGQVASPSFSLLHVYEAMGRRVCHYDLYRLET 89
Query: 76 LKACLELGMLECLLEKGIHFVEW 98
+ G+ + E+ + VEW
Sbjct: 90 MHVKSGEGLFQDAEEEDLICVEW 112
>ref|NP_241411.1| (NC_002570) BH0545~unknown conserved protein [Bacillus halodurans]
dbj|BAB04264.1| (AP001508) BH0545~unknown conserved protein [Bacillus halodurans]
Length = 157
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 10 KVAAAILKDDFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYSE--SVF 67
K+A +L D V+ L+G +G+GKT+ + LG+ SPTF+++ Y ++
Sbjct: 20 KLADKLLAGD---VITLEGDLGAGKTSFTKGLALGLGIKRVVKSPTFTIIREYKGRLPLY 76
Query: 68 HYDFYMHDLKACLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
H D Y + + +LG E G+ VEW +E L LAI +
Sbjct: 77 HMDVYRLNEEE-EDLGFDEYFHGDGVTVVEWA-SLIEGRLPPVRLAITI 123
>ref|NP_642723.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37259.1| (AE011877) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 166
Score = 39.7 bits (91), Expect = 0.006
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY----SESVFHYDFYMHDLKA 78
VV L G +G+GK+TL +A L+ LG+ SPT++L+ Y + +H D Y
Sbjct: 30 VVQLHGDLGAGKSTLARALLRALGVAGPIRSPTYTLVERYPLSTGDEAWHLDLYRIGHAG 89
Query: 79 CLE-LGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIKV 116
L+ LG+ E + VEW E+ +L DL +++
Sbjct: 90 ELDFLGLDEG--SASLWLVEW-PERGAGVLPPVDLDVEL 125
>ref|NP_212320.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51204|Y186_BORBU Hypothetical protein BB0186
pir||B70123 conserved hypothetical protein BB0186 - Lyme disease spirochete
gb|AAC66574.1| (AE001129) conserved hypothetical protein [Borrelia burgdorferi]
Length = 137
Score = 39.3 bits (90), Expect = 0.008
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 23 VVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHAY---SESVFHYDFY-MHDLKA 78
+ +L G +GSGKT+ ++ +LG+ TSPT+++++ Y + +H D Y + L+
Sbjct: 27 IFVLSGDMGSGKTSFLKGLALNLGIS-YFTSPTYNIVNVYDFINFKFYHIDLYRVSSLEE 85
Query: 79 CLELGMLECLLE-KGIHFVEWGDEKLEKILKK--YDLAIKVV 117
+G LE L++ I +EW L + K + L K+V
Sbjct: 86 FELVGGLEILMDLDSIIAIEWPQIALSIVPKDRLFSLTFKIV 127
>ref|NP_637655.1| (NC_003902) conserved hypothetical protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM41579.1| (AE012337) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 166
Score = 39.3 bits (90), Expect = 0.008
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 3 ANLDELDKVAAAILKD-DFKGVVLLKGVVGSGKTTLVQACLKHLGLDIQATSPTFSLMHA 61
A++D ++V A+ VV L G +G+GK+TL +A L+ LG+ SPT++L+
Sbjct: 9 ADVDATEQVGQALAATRPATAVVQLHGDLGAGKSTLARALLRALGVTGPIRSPTYTLVER 68
Query: 62 Y----SESVFHYDFY 72
Y +H D Y
Sbjct: 69 YPLTAGGEAWHLDLY 83
>ref|NP_224853.1| (NC_000922) YjeE hypothetical protein [Chlamydophila pneumoniae
CWL029]
ref|NP_300713.1| (NC_002491) YjeE hypothetical protein [Chlamydophila pneumoniae
J138]
ref|NP_444642.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||B72052 conserved hypothetical protein CP0090 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18796.1| (AE001648) YjeE hypothetical protein [Chlamydophila pneumoniae
CWL029]
gb|AAF37975.1| (AE002172) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98864.1| (AP002547) YjeE hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 141
Score = 38.9 bits (89), Expect = 0.010
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 23 VVLLKGVVGSGKTTLVQACLK-HLGLDI--QATSPTFSLMHAYS---ESVFHYDFYMHDL 76
V+LL G G+GKT V+ + +LG I + SP+FS++H Y + + HYD Y D
Sbjct: 30 VLLLFGDYGAGKTEFVRGIVSGYLGDTIAEEVASPSFSILHVYGNEPKRLCHYDLYRIDQ 89
Query: 77 KACLELGMLECLLEKGIHFVEWGD 100
K + + + E + +EW D
Sbjct: 90 KN--QEYIFQDAEEDDVLCIEWAD 111
>ref|NP_229997.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82333 conserved hypothetical protein VC0343 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93516.1| (AE004123) conserved hypothetical protein [Vibrio cholerae]
Length = 188
Score = 38.9 bits (89), Expect = 0.010
Identities = 28/89 (31%), Positives = 44/89 (48%), Gaps = 5/89 (5%)
Query: 30 VGSGKTTLVQACLKHLGLDIQATSPTFSLMHAYS---ESVFHYDFY-MHDLKACLELGML 85
+G+GKTT + ++ LG SPT++L+ Y V+H+D Y + D + +G+
Sbjct: 71 LGAGKTTFSRGFIRALGHQGNVKSPTYTLVEPYQLGMWQVYHFDLYRLADPEELEFMGIR 130
Query: 86 ECLLEKGIHFVEWGDEKLEKILKKYDLAI 114
+ I VEW EK +L DL I
Sbjct: 131 DYFSADAICLVEW-PEKGHGLLPNADLDI 158
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,329,679
Number of Sequences: 1026957
Number of extensions: 3036564
Number of successful extensions: 13206
Number of sequences better than 1.0e-02: 50
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 13184
Number of HSP's gapped (non-prelim): 50
length of query: 133
length of database: 324,149,939
effective HSP length: 109
effective length of query: 24
effective length of database: 212,211,626
effective search space: 5093079024
effective search space used: 5093079024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)