BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645341|ref|NP_207513.1| hypothetical protein
[Helicobacter pylori 26695]
(109 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207513.1| (NC_000915) hypothetical protein [Helicoba... 213 4e-55
ref|NP_223375.1| (NC_000921) putative [Helicobacter pylori ... 149 4e-36
ref|NP_222839.1| (NC_000921) putative [Helicobacter pylori ... 59 1e-08
ref|NP_206929.1| (NC_000915) hypothetical protein [Helicoba... 55 2e-07
ref|NP_207515.1| (NC_000915) hypothetical protein [Helicoba... 53 7e-07
ref|NP_223376.1| (NC_000921) putative [Helicobacter pylori ... 52 1e-06
>ref|NP_207513.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64609 hypothetical protein HP0719 - Helicobacter pylori (strain 26695)
gb|AAD07775.1| (AE000585) H. pylori predicted coding region HP0719 [Helicobacter
pylori 26695]
Length = 109
Score = 213 bits (541), Expect = 4e-55
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MVKCQNLLSSCGKNLDNKGLGMRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLP 60
MVKCQNLLSSCGKNLDNKGLGMRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLP
Sbjct: 1 MVKCQNLLSSCGKNLDNKGLGMRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLP 60
Query: 61 SNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEGFQKNA 109
SNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEGFQKNA
Sbjct: 61 SNEAIDYRMEVSKRLKTLNAEDAKKFRANFSRIARKNLSKMSEGFQKNA 109
>ref|NP_223375.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71903 hypothetical protein jhp0657 - Helicobacter pylori (strain J99)
gb|AAD06242.1| (AE001498) putative [Helicobacter pylori J99]
Length = 140
Score = 149 bits (377), Expect = 4e-36
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 22 MRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAE 81
MRRSLAF LLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLK L+AE
Sbjct: 1 MRRSLAFCLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKALSAE 60
Query: 82 DAKKFRANFSRIARKNLSKMSE 103
DAKKFRANFSRIARKNLSKMSE
Sbjct: 61 DAKKFRANFSRIARKNLSKMSE 82
>ref|NP_222839.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71970 hypothetical protein jhp0118 - Helicobacter pylori (strain J99)
gb|AAD05707.1| (AE001451) putative [Helicobacter pylori J99]
Length = 143
Score = 58.9 bits (141), Expect = 1e-08
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 24 RSLAFYLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNA 80
+ LAF LL LGL L A DF + N++LL+ AG + +E ++R EV+KRL+ +
Sbjct: 2 KKLAFSLLFTGTFLGL-FLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKE 60
Query: 81 EDAKKFRANFSRIARKNLSKMSE 103
E+ +K++A+F + KNL+ +S+
Sbjct: 61 EERQKYKADFKKAMDKNLASLSQ 83
>ref|NP_206929.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64536 hypothetical protein HP0129 - Helicobacter pylori (strain 26695)
gb|AAD07198.1| (AE000534) H. pylori predicted coding region HP0129 [Helicobacter
pylori 26695]
Length = 141
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/83 (37%), Positives = 50/83 (59%), Gaps = 4/83 (4%)
Query: 24 RSLAFYLL---ALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNA 80
+ LA LL LGL L A DF + +++LL+ AG + +E ++R EV+KRL +
Sbjct: 2 KKLAVSLLFTGTFLGL-FLNASDFKSMDDKQLLEQAGKVAPSEVPEFRAEVNKRLAVMKE 60
Query: 81 EDAKKFRANFSRIARKNLSKMSE 103
ED K ++A+F + KNL+ +S+
Sbjct: 61 EDRKNYKADFKKAMDKNLASLSQ 83
>ref|NP_207515.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64610 hypothetical protein HP0721 - Helicobacter pylori (strain 26695)
gb|AAD07777.1| (AE000585) H. pylori predicted coding region HP0721 [Helicobacter
pylori 26695]
Length = 152
Score = 52.8 bits (125), Expect = 7e-07
Identities = 25/81 (30%), Positives = 44/81 (53%)
Query: 22 MRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAE 81
M+++L ++ L L A+DFS+ +E+L K+AG + + +DY E+ KR++ + +
Sbjct: 1 MKKALKILSVSALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
Query: 82 DAKKFRANFSRIARKNLSKMS 102
K F A KN KM+
Sbjct: 61 KRKAFHKQLHEYATKNTDKMT 81
>ref|NP_223376.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71904 hypothetical protein jhp0658 - Helicobacter pylori (strain J99)
gb|AAD06236.1| (AE001498) putative [Helicobacter pylori J99]
Length = 152
Score = 52.4 bits (124), Expect = 1e-06
Identities = 25/81 (30%), Positives = 43/81 (52%)
Query: 22 MRRSLAFYLLALLGLQVLGARDFSQLKNEELLKLAGTLPSNEAIDYRMEVSKRLKTLNAE 81
M+++L + L L A+DFS+ +E+L K+AG + + +DY E+ KR++ + +
Sbjct: 1 MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPED 60
Query: 82 DAKKFRANFSRIARKNLSKMS 102
K F A KN KM+
Sbjct: 61 KRKAFHKQLHEYATKNTDKMT 81
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,957,622
Number of Sequences: 1026957
Number of extensions: 1792884
Number of successful extensions: 5045
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5039
Number of HSP's gapped (non-prelim): 6
length of query: 109
length of database: 324,149,939
effective HSP length: 85
effective length of query: 24
effective length of database: 236,858,594
effective search space: 5684606256
effective search space used: 5684606256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)