BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645342|ref|NP_207514.1| hypothetical protein
[Helicobacter pylori 26695]
         (53 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207514.1|  (NC_000915) hypothetical protein [Helicoba...   112  1e-24
ref|NP_223375.1|  (NC_000921) putative [Helicobacter pylori ...   109  8e-24

>ref|NP_207514.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64609 hypothetical protein HP0720 - Helicobacter pylori (strain 26695)
 gb|AAD07778.1| (AE000585) H. pylori predicted coding region HP0720 [Helicobacter
          pylori 26695]
          Length = 53

 Score =  112 bits (280), Expect = 1e-24
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 53
          MREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
Sbjct: 1  MREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 53



>ref|NP_223375.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71903 hypothetical protein jhp0657 - Helicobacter pylori (strain J99)
 gb|AAD06242.1| (AE001498) putative [Helicobacter pylori J99]
          Length = 140

 Score =  109 bits (272), Expect = 8e-24
 Identities = 52/53 (98%), Positives = 52/53 (98%)

Query: 1   MREEVRKELEEKTKGLSDEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 53
           MREEVRKELEEKTKGLS EEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK
Sbjct: 88  MREEVRKELEEKTKGLSAEEIKAKGLNVSVCSGDTRKVWCRAVKKKDEHCSPK 140



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.310    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,170,483
Number of Sequences: 1026957
Number of extensions: 1049074
Number of successful extensions: 3188
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3186
Number of HSP's gapped (non-prelim): 2
length of query: 53
length of database: 324,149,939
effective HSP length: 29
effective length of query: 24
effective length of database: 294,368,186
effective search space: 7064836464
effective search space used: 7064836464
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 91 (39.7 bits)