BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645346|ref|NP_207520.1| hypothetical protein
[Helicobacter pylori 26695]
(305 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207520.1| (NC_000915) hypothetical protein [Helicoba... 632 e-180
ref|NP_223381.1| (NC_000921) putative Outer membrane protei... 593 e-168
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 42 0.007
>ref|NP_207520.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64610 hypothetical protein HP0726 - Helicobacter pylori (strain 26695)
gb|AAD07776.1| (AE000585) H. pylori predicted coding region HP0726 [Helicobacter
pylori 26695]
Length = 305
Score = 632 bits (1629), Expect = e-180
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MGRIESKKRLKALVFLASLGVLWGNSAEKTPFFKTKNHIYLGFRLGTGANVHTSMWQQAY 60
MGRIESKKRLKALVFLASLGVLWGNSAEKTPFFKTKNHIYLGFRLGTGANVHTSMWQQAY
Sbjct: 1 MGRIESKKRLKALVFLASLGVLWGNSAEKTPFFKTKNHIYLGFRLGTGANVHTSMWQQAY 60
Query: 61 KDNPTCPGSVCYGEKLEAHYQGGKNLSYTGQIGDEIAFDKHHILGLRVWGDVEYAKAQLG 120
KDNPTCPGSVCYGEKLEAHYQGGKNLSYTGQIGDEIAFDKHHILGLRVWGDVEYAKAQLG
Sbjct: 61 KDNPTCPGSVCYGEKLEAHYQGGKNLSYTGQIGDEIAFDKHHILGLRVWGDVEYAKAQLG 120
Query: 121 QKVGGNTLLSQANYDPNAIKTYDSASNTQGPLVLQKTPSPQNFLFNNGHFMAFGLNVNVF 180
QKVGGNTLLSQANYDPNAIKTYDSASNTQGPLVLQKTPSPQNFLFNNGHFMAFGLNVNVF
Sbjct: 121 QKVGGNTLLSQANYDPNAIKTYDSASNTQGPLVLQKTPSPQNFLFNNGHFMAFGLNVNVF 180
Query: 181 VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFF 240
VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFF
Sbjct: 181 VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFF 240
Query: 241 VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS 300
VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS
Sbjct: 241 VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS 300
Query: 301 YAFLF 305
YAFLF
Sbjct: 301 YAFLF 305
>ref|NP_223381.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||F71904 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06241.1| (AE001498) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 305
Score = 593 bits (1528), Expect = e-168
Identities = 285/305 (93%), Positives = 294/305 (95%)
Query: 1 MGRIESKKRLKALVFLASLGVLWGNSAEKTPFFKTKNHIYLGFRLGTGANVHTSMWQQAY 60
MGRIESKKRLKAL+FLASLGVLWGN+AEKTPFFKTKNHIYLGFRLGTGA TSMWQQAY
Sbjct: 1 MGRIESKKRLKALIFLASLGVLWGNAAEKTPFFKTKNHIYLGFRLGTGATTRTSMWQQAY 60
Query: 61 KDNPTCPGSVCYGEKLEAHYQGGKNLSYTGQIGDEIAFDKHHILGLRVWGDVEYAKAQLG 120
KDNPTCP SVCYGEKLEAHY+GGKNLSYTGQIGDEIAFDK+HILGLRVWGDVEYAKAQLG
Sbjct: 61 KDNPTCPSSVCYGEKLEAHYKGGKNLSYTGQIGDEIAFDKYHILGLRVWGDVEYAKAQLG 120
Query: 121 QKVGGNTLLSQANYDPNAIKTYDSASNTQGPLVLQKTPSPQNFLFNNGHFMAFGLNVNVF 180
QKVGGNTLLSQANY+P+AIKTYD SN QG LVLQKTPSPQ+FLFNNGHFMAFGLNVN+F
Sbjct: 121 QKVGGNTLLSQANYNPSAIKTYDPTSNAQGSLVLQKTPSPQDFLFNNGHFMAFGLNVNMF 180
Query: 181 VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPNYQNQNTKQGDKFFAAGGGFF 240
VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSP Y+NQNT Q DKFFAAGGGFF
Sbjct: 181 VNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAILWSPQYKNQNTHQDDKFFAAGGGFF 240
Query: 241 VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS 300
VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS
Sbjct: 241 VNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFVS 300
Query: 301 YAFLF 305
YAFLF
Sbjct: 301 YAFLF 305
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 42.4 bits (98), Expect = 0.007
Identities = 48/185 (25%), Positives = 79/185 (41%), Gaps = 26/185 (14%)
Query: 113 EYAKAQLGQKVGGNTLLSQANYDPNAIKTYDSASNTQGPLVLQKTPSPQNFLFNNG---- 168
+ AK + G +G +L + N + ++ SN Q +L S F NG
Sbjct: 106 QMAKNKSGFFIG--VILGDIGINANPYEKFELLSNIQASPLLYGLRSGYQKYFANGISAL 163
Query: 169 ------------HFMAFGLNVNVFVNLPIDTLLKLALKTEKMLFFKIGVFGGGGVEYAIL 216
F + L +L ID L+ + EK F +G+FGG GV
Sbjct: 164 RFYGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKR--FALGIFGGVGVG---- 217
Query: 217 WSPNYQNQNTKQGDKFFAAGGGFFVNFGGSLYIGKRNRFNVGLKIPYYSLSAQSW-KNFG 275
W+ YQN +G A G +N G S+ + ++RF + LK+P ++Q++ F
Sbjct: 218 WNGMYQNLKEIRGYSQPNAFG-LVLNLGVSMTLNLKHRFELALKMPPLKETSQTFLYYFK 276
Query: 276 SSNVW 280
S+N++
Sbjct: 277 STNIY 281
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,547,805
Number of Sequences: 1026957
Number of extensions: 9899278
Number of successful extensions: 18749
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18746
Number of HSP's gapped (non-prelim): 3
length of query: 305
length of database: 324,149,939
effective HSP length: 120
effective length of query: 185
effective length of database: 200,915,099
effective search space: 37169293315
effective search space used: 37169293315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)