BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645348|ref|NP_207522.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(336 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207522.1| (NC_000915) conserved hypothetical protein... 676 0.0
ref|NP_223383.1| (NC_000921) putative [Helicobacter pylori ... 621 e-177
ref|NP_282593.1| (NC_002163) hypothetical protein Cj1453c [... 236 3e-61
emb|CAA10333.1| (AJ131242) hypothetical protein [Wolinella ... 182 5e-45
ref|NP_220361.1| (NC_000117) PP-loop superfamily ATPase [Ch... 81 1e-14
ref|NP_387948.1| (NC_000964) similar to cell-cycle protein ... 79 7e-14
pir||S66097 cell-cycle protein homolog yacA - Bacillus subt... 79 7e-14
ref|NP_268433.1| (NC_002737) putative cell-cycle protein [S... 79 1e-13
ref|NP_606346.1| (NC_003485) putative cell-cycle protein [S... 79 1e-13
ref|NP_371033.1| (NC_002758) conserved hypothetical protein... 78 1e-13
ref|NP_645281.1| (NC_003923) conserved hypothetical protein... 77 3e-13
ref|NP_359704.1| (NC_003103) cell cycle protein MesJ [Ricke... 77 4e-13
ref|NP_296607.1| (NC_002620) MesJ/Ycf62 family protein [Chl... 77 4e-13
ref|NP_357604.1| (NC_003098) Conserved hypothetical protein... 76 6e-13
ref|NP_344564.1| (NC_003028) MesJ/Ycf62 family protein [Str... 76 6e-13
ref|NP_225191.1| (NC_000922) PP-loop superfamily ATPase [Ch... 75 1e-12
ref|NP_220436.1| (NC_000963) CELL CYCLE PROTEIN MESJ (mesJ)... 74 2e-12
ref|NP_463750.1| (NC_003210) fusion protein, N-terminal par... 74 3e-12
ref|NP_214296.1| (NC_000918) cell cycle protein MesJ [Aquif... 72 7e-12
ref|NP_212922.1| (NC_001318) conserved hypothetical protein... 71 2e-11
ref|NP_469596.1| (NC_003212) fusion protein, N-terminal par... 70 3e-11
ref|NP_484975.1| (NC_003272) hypothetical protein [Nostoc s... 70 3e-11
gb|AAM74001.1|AF467001_2 (AF467001) YacA/HprT-like protein ... 70 3e-11
ref|NP_239943.1| (NC_002528) cell cycle protein mesJ [Buchn... 69 6e-11
ref|NP_266175.1| (NC_002662) cell cycle protein MesJ [Lacto... 69 1e-10
ref|NP_563388.1| (NC_003366) probable cell-cycle protein [C... 68 1e-10
ref|NP_404675.1| (NC_003143) conserved hypothetical protein... 67 2e-10
ref|NP_654012.1| (NC_003995) UPF0021, Uncharacterized prote... 66 6e-10
ref|NP_038397.1| (NC_002186) hypothetical chloroplast RF62 ... 65 1e-09
ref|NP_231873.1| (NC_002505) mesJ protein [Vibrio cholerae]... 62 1e-08
ref|NP_414730.1| (NC_000913) cell cycle protein [Escherichi... 60 4e-08
ref|NP_662497.1| (NC_002932) MesJ protein [Chlorobium tepid... 60 5e-08
gb|AAG12421.1| (AY005137) MesJ [Chlorobium tepidum] 60 5e-08
ref|NP_252328.1| (NC_002516) conserved hypothetical protein... 59 8e-08
ref|NP_519291.1| (NC_003295) PUTATIVE CELL CYCLE PROTEIN [R... 59 1e-07
ref|NP_072746.1| (NC_000908) conserved hypothetical protein... 58 1e-07
ref|NP_438566.1| (NC_000907) cell cycle protein (mesJ) [Hae... 58 1e-07
pir||T31465 cell cycle protein homolog mesJ - Heliobacillus... 57 2e-07
ref|NP_245226.1| (NC_002663) MesJ [Pasteurella multocida] >... 57 2e-07
ref|NP_349800.1| (NC_003030) Cell cycle protein MesJ orthol... 57 3e-07
ref|NP_285882.1| (NC_002655) cell cycle protein [Escherichi... 57 4e-07
ref|NP_045149.1| (NC_001840) unknown [Cyanidium caldarium] ... 56 5e-07
ref|NP_109910.1| (NC_000912) similar to PP-loop superfamily... 56 5e-07
ref|NP_602768.1| (NC_003454) Cell cycle protein MesJ [Fusob... 55 9e-07
ref|NP_077907.1| (NC_002162) conserved hypothetical [Ureapl... 55 1e-06
ref|NP_326611.1| (NC_002771) conserved hypothetical protein... 55 1e-06
emb|CAB51028.1| (AJ243808) YaeN protein [Bradyrhizobium jap... 54 2e-06
ref|NP_228389.1| (NC_000853) conserved hypothetical protein... 54 2e-06
dbj|BAB02008.1| (AB020746) gene_id:MOB24.14~unknown protein... 53 6e-06
ref|NP_660462.1| (NC_004061) putative cell cycle protein Me... 53 6e-06
ref|NP_454844.1| (NC_003198) cell cycle protein MesJ [Salmo... 52 1e-05
ref|NP_623930.1| (NC_003869) predicted ATPase of the PP-loo... 52 1e-05
ref|NP_459241.1| (NC_003197) cell cycle protein [Salmonella... 52 1e-05
ref|NP_284094.1| (NC_003116) hypothetical protein NMA1350 [... 50 4e-05
ref|NP_441601.1| (NC_000911) hypothetical protein [Synechoc... 50 5e-05
pir||F75424 probable cell cycle protein MesJ/cytosine deami... 50 5e-05
ref|NP_294931.1| (NC_001263) cell cycle protein MesJ, putat... 49 8e-05
ref|NP_053993.1| (NC_000925) ORF327 [Porphyra purpurea] >gi... 49 1e-04
gb|AAL80000.1| (AY077630) RASPBERRY3 [Arabidopsis thaliana] 48 1e-04
ref|NP_297949.1| (NC_002488) cell cycle protein [Xylella fa... 48 2e-04
ref|NP_240949.1| (NC_002570) cell-cycle protein [Bacillus h... 46 5e-04
gb|AAK92521.1|AF401042_1 (AF401042) LaaH [Lactobacillus sakei] 45 0.001
ref|NP_218813.1| (NC_000919) conserved hypothetical protein... 45 0.002
ref|NP_601894.1| (NC_003450) COG0037:Predicted ATPase of th... 44 0.003
dbj|BAC00092.1| (AP005282) Predicted ATPase of the PP-loop ... 44 0.003
ref|NP_281329.1| (NC_002163) hypothetical protein Cj0118 [C... 43 0.004
ref|NP_539259.1| (NC_003317) CELL CYCLE PROTEIN MESJ [Bruce... 43 0.006
ref|NP_594640.1| (NC_003424) hypothetical protein [Schizosa... 42 0.008
>ref|NP_207522.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||H64610 conserved hypothetical protein HP0728 - Helicobacter pylori
(strain 26695)
gb|AAD07779.1| (AE000586) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 336
Score = 676 bits (1744), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MQDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHA 60
MQDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHA
Sbjct: 1 MQDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHA 60
Query: 61 QKLAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWF 120
QKLAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWF
Sbjct: 61 QKLAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWF 120
Query: 121 LMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFK 180
LMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFK
Sbjct: 121 LMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFK 180
Query: 181 RNCFRKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVD 240
RNCFRKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVD
Sbjct: 181 RNCFRKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVD 240
Query: 241 KILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRA 300
KILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRA
Sbjct: 241 KILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRA 300
Query: 301 RRLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL 336
RRLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL
Sbjct: 301 RRLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL 336
>ref|NP_223383.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71901 hypothetical protein jhp0665 - Helicobacter pylori (strain J99)
gb|AAD06249.1| (AE001499) putative [Helicobacter pylori J99]
Length = 338
Score = 621 bits (1602), Expect = e-177
Identities = 308/335 (91%), Positives = 320/335 (94%)
Query: 2 QDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQ 61
+DFK +LEPL+EGKNLLGFSGGLDSTCLF LLVGENI FDIALVDY+TQKQRLEIIQHAQ
Sbjct: 4 RDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVGENIAFDIALVDYSTQKQRLEIIQHAQ 63
Query: 62 KLAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 121
KLA+THHKKCYIH+APKIA NFEMQARK+RYDFFETLIKEHSYKHLILAHHLNDRLEWFL
Sbjct: 64 KLAQTHHKKCYIHYAPKIARNFEMQARKVRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 123
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKR 181
MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD KFFEDDSNSSLKFKR
Sbjct: 124 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQKFFEDDSNSSLKFKR 183
Query: 182 NCFRKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDK 241
NCFRK+YAN+LMQ YSKGIIQSFKFLD+EKERLYPL VSQMHGITFFK+S NALFMVDK
Sbjct: 184 NCFRKHYANALMQHYSKGIIQSFKFLDKEKERLYPLIPVSQMHGITFFKHSHNALFMVDK 243
Query: 242 ILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRAR 301
ILK+KGYVLSF QKEEIK FFSLEIAQKFIIE DKEHVFIA KP KTLSMPKDFKDRAR
Sbjct: 244 ILKKKGYVLSFLQKEEIKHHFFSLEIAQKFIIEKDKEHVFIAFKPQKTLSMPKDFKDRAR 303
Query: 302 RLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL 336
RLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL
Sbjct: 304 RLDIPKRLRPVLYAEFLKQPTHDFLTRFKQSLMDL 338
>ref|NP_282593.1| (NC_002163) hypothetical protein Cj1453c [Campylobacter jejuni]
pir||D81291 hypothetical protein Cj1453c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73876.1| (AL139078) hypothetical protein Cj1453c [Campylobacter jejuni]
Length = 321
Score = 236 bits (602), Expect = 3e-61
Identities = 126/310 (40%), Positives = 194/310 (61%), Gaps = 10/310 (3%)
Query: 8 LEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQR-LEIIQHAQKLAKT 66
L LK GKNLL FS G DS+ LF+LL+ E I FD+ +++Y T+K LE ++ A++LA
Sbjct: 8 LSLLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVMINYKTRKNSDLEELK-AKELALK 66
Query: 67 HHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSK 126
HKK +I HAPK NFE +AR RYDFFE + E Y HLILAHHLND+ EWFLMQLS+
Sbjct: 67 FHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126
Query: 127 GAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCF 184
GAGL +L Q EKR +Y ++RPLL+ KD + + KD+ +F D+SN + K+ RN
Sbjct: 127 GAGLAEILGMQECEKRSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNENEKYFRNYI 186
Query: 185 RKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILK 244
RKN++N+ + ++ +G+ +SF +LD+++++LY + ++ G+ +++ ++ + +K
Sbjct: 187 RKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYDFENIKEIQGLLICPKNES---LIARAVK 243
Query: 245 QKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRARRLD 304
KG +LS +Q++E+ + + K + E I + +PK+FK+ R
Sbjct: 244 MKGLLLSTAQRKELLKG--DCVLGGKIALAYKNEQA-IVFEYETCQKLPKNFKEECRIAK 300
Query: 305 IPKRLRPVLY 314
IP+ LR LY
Sbjct: 301 IPRLLRAYLY 310
>emb|CAA10333.1| (AJ131242) hypothetical protein [Wolinella succinogenes]
Length = 210
Score = 182 bits (462), Expect = 5e-45
Identities = 97/201 (48%), Positives = 135/201 (66%), Gaps = 3/201 (1%)
Query: 9 EPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHH 68
E L++GKNLLGFSGG+DST LFFLL+ I FDIALV+Y+ + Q E +A++LA H
Sbjct: 11 ERLRQGKNLLGFSGGVDSTALFFLLLEREIPFDIALVNYHQRAQAKEEESYAKELAHRHQ 70
Query: 69 KKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGA 128
K+C+ P NFE QAR RY FFE+LI + Y L+LAHHL DRLEW LM+L++G+
Sbjct: 71 KRCFTLSCPLGPSNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRLAQGS 130
Query: 129 GLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCFRK 186
L+TLL F + E R Y ++RPL K+ L +++FED+SN K RN FR
Sbjct: 131 SLSTLLGFSSREIRLGYELIRPLGEITKEALYDYLHQHQIRYFEDESNRDPKPLRNRFRP 190
Query: 187 NYANSLMQDYSKGIIQSFKFL 207
+ +L+Q++++G++QSF+FL
Sbjct: 191 -LSETLLQEHAQGLLQSFRFL 210
>ref|NP_220361.1| (NC_000117) PP-loop superfamily ATPase [Chlamydia trachomatis]
pir||C71463 probable p-loop ATPase - Chlamydia trachomatis (serotype D, strain
UW3/Cx)
gb|AAC68437.1| (AE001357) PP-loop superfamily ATPase [Chlamydia trachomatis]
Length = 321
Score = 81.3 bits (199), Expect = 1e-14
Identities = 66/268 (24%), Positives = 114/268 (41%), Gaps = 19/268 (7%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
K+ K LL SGG DS L +LL I F VDY ++ + L +
Sbjct: 21 KKKKYLLALSGGSDSLFLMYLLKSRAIFFTAVHVDYGWRETSYQEASDLAALCEQEQIPF 80
Query: 72 YIHHA----PKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
+ P + + E AR+ RY+ F L KE + + L HH +D+ E L ++ +G
Sbjct: 81 ILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHADDQAETILKRVFEG 140
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCFR 185
A L L A A++RPLL+ PK + + +++ +D +N + +F R R
Sbjct: 141 AHLGNLKGMSAQVMYRDVALLRPLLHIPKHKIVEALDSHQVQYVQDITNCNERFLRARMR 200
Query: 186 KNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQ 245
+ L + K I L++ + + Q A F++ + +
Sbjct: 201 ERLFPYLQDVFGKNIRDPL------------LSLAGDSAELREYLDQQTAPFLLRVVDNE 248
Query: 246 KGYVLSFSQKEEIKRSFFSLEIAQKFII 273
+G +L Q E +K SF + + ++F +
Sbjct: 249 RGKLLPIEQ-ELLKTSFLAKWVCKQFFL 275
>ref|NP_387948.1| (NC_000964) similar to cell-cycle protein [Bacillus subtilis]
sp|P37563|YACA_BACSU Hypothetical protein yacA
emb|CAB11843.1| (Z99104) similar to cell-cycle protein [Bacillus subtilis]
Length = 472
Score = 79.0 bits (193), Expect = 7e-14
Identities = 86/320 (26%), Positives = 140/320 (42%), Gaps = 25/320 (7%)
Query: 1 MQDF-KTHLEPLKEGKNLLGFSGGLDSTCLFFLL---VGENIVFDIALVDYNTQ-KQRLE 55
++DF H LK ++G SGG DS L L G + A VD+ + + E
Sbjct: 4 VKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEE 63
Query: 56 IIQHAQKLAKTHHKKC------YIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLIL 109
++ Q K C +A + N + AR RY FFE ++ +H +L L
Sbjct: 64 DMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLAL 123
Query: 110 AHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LK 167
AHH +D++E LM+L+KG L Q + + I+RP L K+ + + L
Sbjct: 124 AHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLS 183
Query: 168 FFEDDSNSSLKFKRNCFRKNYANSLMQ---DYSKGIIQSFKFLDQEKERLYPLT------ 218
+ D+SN+ + RN FRK L Q D K + + L ++++ L LT
Sbjct: 184 YRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNK 243
Query: 219 -IVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDK 277
I SQ + T + + + L + L+++G L + E S FS Q+F+ ++
Sbjct: 244 VITSQSN--TSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAEN 301
Query: 278 EHVFIALKPPKTLSMPKDFK 297
L PK L + K ++
Sbjct: 302 GGPSGVLDFPKGLKVVKSYQ 321
>pir||S66097 cell-cycle protein homolog yacA - Bacillus subtilis
dbj|BAA05302.1| (D26185) unknown [Bacillus subtilis]
Length = 486
Score = 79.0 bits (193), Expect = 7e-14
Identities = 86/320 (26%), Positives = 140/320 (42%), Gaps = 25/320 (7%)
Query: 1 MQDF-KTHLEPLKEGKNLLGFSGGLDSTCLFFLL---VGENIVFDIALVDYNTQ-KQRLE 55
++DF H LK ++G SGG DS L L G + A VD+ + + E
Sbjct: 18 VKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSANVIAAHVDHRFRGAESEE 77
Query: 56 IIQHAQKLAKTHHKKC------YIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLIL 109
++ Q K C +A + N + AR RY FFE ++ +H +L L
Sbjct: 78 DMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLAL 137
Query: 110 AHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LK 167
AHH +D++E LM+L+KG L Q + + I+RP L K+ + + L
Sbjct: 138 AHHGDDQVETMLMKLAKGTLGTGLAGMQPVRRFGTGRIIRPFLTITKEEILHYCHENGLS 197
Query: 168 FFEDDSNSSLKFKRNCFRKNYANSLMQ---DYSKGIIQSFKFLDQEKERLYPLT------ 218
+ D+SN+ + RN FRK L Q D K + + L ++++ L LT
Sbjct: 198 YRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFLQSLTKDEMNK 257
Query: 219 -IVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDK 277
I SQ + T + + + L + L+++G L + E S FS Q+F+ ++
Sbjct: 258 VITSQSN--TSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQQFLDWAEN 315
Query: 278 EHVFIALKPPKTLSMPKDFK 297
L PK L + K ++
Sbjct: 316 GGPSGVLDFPKGLKVVKSYQ 335
>ref|NP_268433.1| (NC_002737) putative cell-cycle protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33155.1| (AE006472) putative cell-cycle protein [Streptococcus pyogenes M1
GAS]
Length = 428
Score = 78.6 bits (192), Expect = 1e-13
Identities = 62/208 (29%), Positives = 98/208 (46%), Gaps = 21/208 (10%)
Query: 17 LLGFSGGLDSTCL--FFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYI- 73
L+ SGG+DS L F L + + I + N + Q ++ ++ + KC+
Sbjct: 24 LIAVSGGVDSMNLLHFLYLFQDKLKIRIGIAHVNHK-------QRSESDSEEAYLKCWAK 76
Query: 74 -HHAPKIAHNFE-----MQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
H P NFE AR RY FF++++ +++Y L+ AHH +D+ E LM+L +G
Sbjct: 77 KHDIPIYVSNFEGIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMRLIRG 136
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKRNCFRKN 187
+ L L ++ + + ++RP L K L ++ FED SN L F RN R N
Sbjct: 137 SRLRHLSGIKSVQPFANGQLIRPFLTFSKKDL----PEIFHFEDSSNRELSFLRNRVRNN 192
Query: 188 YANSLMQDYSKGIIQSFKFLDQEKERLY 215
Y L Q+ + IQ L E L+
Sbjct: 193 YLPLLKQENPR-FIQGLNQLALENSLLF 219
>ref|NP_606346.1| (NC_003485) putative cell-cycle protein [Streptococcus pyogenes
MGAS8232]
gb|AAL96845.1| (AE009953) putative cell-cycle protein [Streptococcus pyogenes
MGAS8232]
Length = 428
Score = 78.6 bits (192), Expect = 1e-13
Identities = 62/208 (29%), Positives = 98/208 (46%), Gaps = 21/208 (10%)
Query: 17 LLGFSGGLDSTCL--FFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYI- 73
L+ SGG+DS L F L + + I + N + Q ++ ++ + KC+
Sbjct: 24 LIAVSGGVDSMNLLHFLYLFQDKLKIRIGIAHVNHK-------QRSESDSEEAYLKCWAK 76
Query: 74 -HHAPKIAHNFE-----MQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
H P NFE AR RY FF++++ +++Y L+ AHH +D+ E LM+L +G
Sbjct: 77 KHDIPIYVSNFEGIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMRLIRG 136
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKRNCFRKN 187
+ L L ++ + + ++RP L K L ++ FED SN L F RN R N
Sbjct: 137 SRLRYLSGIKSVQPFANGQLIRPFLTFSKKDL----PEIFHFEDSSNRELSFLRNRVRNN 192
Query: 188 YANSLMQDYSKGIIQSFKFLDQEKERLY 215
Y L Q+ + IQ L E L+
Sbjct: 193 YLPLLKQENPR-FIQGLNQLALENSLLF 219
>ref|NP_371033.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373719.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41697.1| (AP003130) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56671.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 431
Score = 78.2 bits (191), Expect = 1e-13
Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 44/342 (12%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIAL----VDYNTQKQRLEIIQHAQKLAKTHH---- 68
++ S G+DS CL + L+ + L V++ + +E + + + HH
Sbjct: 15 VVAVSTGIDSMCLLYQLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERHHIDLH 74
Query: 69 -KKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
KK + H+ ++ + +AR RY++F+ ++ L+ AHHL+D+LE + ++ G
Sbjct: 75 IKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETIMYRIFNG 134
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRNCFR 185
L F KR+ Y I RPLL K +K + + +FED+SN K+ RN R
Sbjct: 135 KSTRNKLGFDELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESNKDNKYIRNDIR 194
Query: 186 KNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQ------------ 233
++ ++ + K E+ L ++ F K+ +
Sbjct: 195 NRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQSKYLEVSRQAF 254
Query: 234 ----NALFMV--DKILKQKGYVLSFSQKE--------EIKRSFFSLEIAQKFIIESDKEH 279
N+L MV D +L + + + S K K++ FS+ + K+II+
Sbjct: 255 NNLPNSLKMVVLDCLLSKYYELFNISAKTYEEWFKQFSSKKAQFSINLTDKWIIQIAYGK 314
Query: 280 VFIALK-------PPKTLSMPKDFKDRARRLDIPKRLRPVLY 314
+ I K +T+ P ++ RL+I L L+
Sbjct: 315 LIIMAKNNGDTYFRVQTIKKPGNYFFNKYRLEIHSNLPKCLF 356
>ref|NP_645281.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94329.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 431
Score = 77.0 bits (188), Expect = 3e-13
Identities = 83/350 (23%), Positives = 146/350 (41%), Gaps = 60/350 (17%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIAL----VDYNTQKQRLEIIQHAQKLAKTHH---- 68
++ S G+DS CL + L+ + L V++ + +E + + + HH
Sbjct: 15 VVAVSTGIDSMCLLYQLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEVYCERHHIDLH 74
Query: 69 -KKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
KK + H+ ++ + +AR RY++F+ ++ L+ AHHL+D+LE + ++ G
Sbjct: 75 IKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETIMYRIFNG 134
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRNCFR 185
L F KR+ Y I RPLL K +K + + +FED+SN K+ RN R
Sbjct: 135 KSTRNKLGFDELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESNKDNKYVRNDIR 194
Query: 186 KNYANS------------------------LMQDYSKGIIQSFKFLDQEKERLYPLTIVS 221
+ ++Q +K IQ F D++ + L VS
Sbjct: 195 NRIIPAIDENNQLKASHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQSKYLE----VS 250
Query: 222 QMHGITFFKYSQNALFMV--DKILKQKGYVLSFSQKE--------EIKRSFFSLEIAQKF 271
+ F N+L MV D +L + + + S K K++ FS+ + K+
Sbjct: 251 RQ----AFNNLPNSLKMVVLDCLLSKYYELFNISAKTYEEWFKQFSSKKAQFSINLTDKW 306
Query: 272 IIESDKEHVFIALK-------PPKTLSMPKDFKDRARRLDIPKRLRPVLY 314
II+ + I K +T+ P ++ RL+I L L+
Sbjct: 307 IIQIAYGKLIIMAKNNGDTYFRVQTIEKPGNYIFNKYRLEIHSNLPKCLF 356
>ref|NP_359704.1| (NC_003103) cell cycle protein MesJ [Rickettsia conorii]
sp|Q92JK0|Y067_RICCN Hypothetical protein RC0067
gb|AAL02605.1| (AE008574) cell cycle protein MesJ [Rickettsia conorii]
Length = 478
Score = 76.6 bits (187), Expect = 4e-13
Identities = 62/214 (28%), Positives = 104/214 (47%), Gaps = 18/214 (8%)
Query: 18 LGFSGGLDSTCLFFLL----VGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYI 73
+ SGG DS L +L NI + VD+N ++Q + + Q ++ + ++K
Sbjct: 24 IAVSGGSDSVALLYLANIWAEKNNIELFVISVDHNLREQSKQETHYIQNISNSLNRK--- 80
Query: 74 HHAPKIAH-----NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGA 128
H++ H N + +AR+ RYD L E L+ AHH +D +E F ++L + +
Sbjct: 81 HYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRLERNS 140
Query: 129 GLNTLLSFQAYEKRESYAIVRPLLYTPKDTL--KTLAKDLKFFEDDSNSSLKFKRNCFRK 186
G+ LS + I+RPL PK L + ++K+FED+SNSS K++RN R+
Sbjct: 141 GIFG-LSSSNINWYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKYRRNVIRQ 199
Query: 187 NYAN--SLMQDYSKGII-QSFKFLDQEKERLYPL 217
A ++ +SK + + FK + Y L
Sbjct: 200 KLAKGADYIRHFSKPVYREEFKGDTERSTAAYTL 233
>ref|NP_296607.1| (NC_002620) MesJ/Ycf62 family protein [Chlamydia muridarum]
pir||E81725 MesJ/Ycf62 family protein TC0228 [imported] - Chlamydia muridarum
(strain Nigg)
gb|AAF39100.1| (AE002290) MesJ/Ycf62 family protein [Chlamydia muridarum]
Length = 321
Score = 76.6 bits (187), Expect = 4e-13
Identities = 60/212 (28%), Positives = 98/212 (45%), Gaps = 12/212 (5%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
K+ K LL SGG DS L +LL I F VDY ++ Q A LA ++
Sbjct: 21 KKKKYLLALSGGSDSLLLMYLLRSRGISFTAVHVDYGWRETSY---QEACDLASLCEREQ 77
Query: 72 --YIHHAPKIAH-----NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQL 124
+I ++A+ + E AR+ RY+ F L KE + + L HH +D+ E L ++
Sbjct: 78 IPFILDRQEVANPMDFSDIENIARQYRYELFYRLCKERLFAGVFLGHHADDQAETILKRV 137
Query: 125 SKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRN 182
+GA L L Y + ++RPLL+ K + + +++ +D +N+ +F R
Sbjct: 138 FEGAHLGNLKGMARYGTYKGITLLRPLLHITKRQIVEALDNYRIEYVQDATNADERFLRA 197
Query: 183 CFRKNYANSLMQDYSKGIIQSFKFLDQEKERL 214
R+ L + + K I Q FL ++ L
Sbjct: 198 RMREQLFPYLQEIFGKNIRQPLLFLAEDSAEL 229
>ref|NP_357604.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK98814.1| (AE008385) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 425
Score = 75.9 bits (185), Expect = 6e-13
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALV-DYNTQKQRLEIIQHAQKLAKTHHKK 70
K K +L SGGLDS LF +L +I L+ + KQR+E ++L K +
Sbjct: 18 KHAKAVLALSGGLDSMFLFKVLSTYQKELEIELILAHVNHKQRIESDWEEKELRKLAAEA 77
Query: 71 CYIHHAPKIAHNF-EMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAG 129
+ + F E +AR RYDFF+ ++K+ L+ AHH +D++E M+L +G
Sbjct: 78 ELPIYISNFSGEFSEARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRLIRGTR 137
Query: 130 LNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKRNCFRKNYA 189
L L + + I+RP L+ K ++ FED SN + RN R +Y
Sbjct: 138 LRYLSGIKEKQVVGEIEIIRPFLHFQKKDFPSIF----HFEDTSNQENHYFRNRIRNSYL 193
Query: 190 NSLMQD 195
L ++
Sbjct: 194 PELEKE 199
>ref|NP_344564.1| (NC_003028) MesJ/Ycf62 family protein [Streptococcus pneumoniae
TIGR4]
gb|AAK74204.1| (AE007318) MesJ/Ycf62 family protein [Streptococcus pneumoniae
TIGR4]
Length = 425
Score = 75.9 bits (185), Expect = 6e-13
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALV-DYNTQKQRLEIIQHAQKLAKTHHKK 70
K K +L SGGLDS LF +L +I L+ + KQR+E ++L K +
Sbjct: 18 KHAKAVLALSGGLDSMFLFKVLSTYQKELEIELILAHVNHKQRIESDWEEKELRKLAAEA 77
Query: 71 CYIHHAPKIAHNF-EMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAG 129
+ + F E +AR RYDFF+ ++K+ L+ AHH +D++E M+L +G
Sbjct: 78 ELPIYISNFSGEFSEARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRLIRGTR 137
Query: 130 LNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKRNCFRKNYA 189
L L + + I+RP L+ K ++ FED SN + RN R +Y
Sbjct: 138 LRYLSGIKEKQVVGEIEIIRPFLHFQKKDFPSIF----HFEDTSNQENHYFRNRIRNSYL 193
Query: 190 NSLMQD 195
L ++
Sbjct: 194 PELEKE 199
>ref|NP_225191.1| (NC_000922) PP-loop superfamily ATPase [Chlamydophila pneumoniae
CWL029]
ref|NP_301052.1| (NC_002491) PP-loop superfamily ATPase [Chlamydophila pneumoniae
J138]
ref|NP_445396.1| (NC_002179) MesJ/Ycf62 family protein [Chlamydophila pneumoniae
AR39]
pir||E72009 MesJ/Ycf62 family protein CP0858 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD19134.1| (AE001680) PP-loop superfamily ATPase [Chlamydophila pneumoniae
CWL029]
gb|AAF38647.1| (AE002245) MesJ/Ycf62 family protein [Chlamydophila pneumoniae
AR39]
dbj|BAA99204.1| (AP002548) PP-loop superfamily ATPase [Chlamydophila pneumoniae
J138]
Length = 319
Score = 74.7 bits (182), Expect = 1e-12
Identities = 56/203 (27%), Positives = 88/203 (42%), Gaps = 5/203 (2%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHHA 76
LL SGG DS LF+LL + F +D+ + + + ++L ++
Sbjct: 28 LLALSGGSDSLFLFYLLKERGVSFTAVHIDHGWRSTSAQEAKELEELCAREGVPFVLYTL 87
Query: 77 PKIAH---NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTL 133
+ E QARK RY F ++ + LAHH ND+ E L +L + A L L
Sbjct: 88 TAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLAHHANDQAETVLKRLLESAHLTNL 147
Query: 134 LSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCFRKNYANS 191
+ E ++RPLL+ PK +LK A+ + + +D SN ++ R RK
Sbjct: 148 KAMAERSYVEDVLLLRPLLHIPKSSLKEALDARGISYLQDPSNEDERYLRARMRKKLFPW 207
Query: 192 LMQDYSKGIIQSFKFLDQEKERL 214
L + + K I L +E L
Sbjct: 208 LEEVFGKNITFPLLTLGEESAEL 230
>ref|NP_220436.1| (NC_000963) CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii]
sp|Q9ZEA3|Y042_RICPR Hypothetical protein RP042
pir||B71712 cell cycle protein mesj (mesJ) RP042 - Rickettsia prowazekii
emb|CAA14513.1| (AJ235270) CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii]
Length = 430
Score = 74.3 bits (181), Expect = 2e-12
Identities = 71/252 (28%), Positives = 116/252 (45%), Gaps = 18/252 (7%)
Query: 15 KNLLGFSGGLDSTCLFFLLV----GENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKK 70
K + SGG DS L +L NI + VD+N + Q + + ++ ++K
Sbjct: 21 KIAIAVSGGSDSISLLYLANIWARKNNIELFVISVDHNLRPQSKQENYYIHTISSNLNRK 80
Query: 71 CY---IHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
Y H + N + +AR+ RYD L E L+ AHH +D +E F ++L +
Sbjct: 81 YYNLSFDHQNNFS-NLQERAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRLERN 139
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTL--KTLAKDLKFFEDDSNSSLKFKRNCFR 185
+G+ L S + + I+RPL PK L + +K+FED+SN S K++RN R
Sbjct: 140 SGIFGLSSSNIH-WYNNIQIIRPLYNIPKSELVEYLVNHKIKWFEDESNLSDKYRRNIIR 198
Query: 186 KNYANSLMQDYSKGII--QSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMV--DK 241
+ ++Y K I Q K ++ L P I + + F+Y L +V DK
Sbjct: 199 QKLFKE--ENYIKAEISLQQLKTNKLIEDELKPALISAIAEAVKIFEYGFTFLDLVKFDK 256
Query: 242 ILKQ-KGYVLSF 252
L + K +++F
Sbjct: 257 FLNEVKAQIINF 268
>ref|NP_463750.1| (NC_003210) fusion protein, N-terminal part similar to B. subtilis
YacA protein, C-terminal part similar to
hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes EGD-e]
emb|CAD00746.1| (AL591974) fusion protein, N-terminal part similar to B. subtilis
YacA protein, C-terminal part similar to
hypoxanthine-guanine phosphoribosyltransferase [Listeria
monocytogenes]
Length = 648
Score = 73.6 bits (179), Expect = 3e-12
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 22/218 (10%)
Query: 13 EGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKK-- 70
+ K L+ SGG DS L L N+V A+ + Q E Q++ +T ++
Sbjct: 21 DDKLLVAVSGGPDSLALLHFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80
Query: 71 --CYIHH------APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLM 122
YI A + E AR +RYDFFE ++ E + L+LAHH +D++E LM
Sbjct: 81 IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140
Query: 123 QLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFK 180
+L +G+ Q + + +RP L K + A+ +L + D+SN+S ++
Sbjct: 141 RLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHELAYEIDESNTSQEYT 200
Query: 181 RNCFRKNYANSLMQD----------YSKGIIQSFKFLD 208
RN +R L Q+ +S+ + F+FL+
Sbjct: 201 RNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLE 238
>ref|NP_214296.1| (NC_000918) cell cycle protein MesJ [Aquifex aeolicus]
sp|O67728|YI87_AQUAE Hypothetical protein AQ_1887
pir||F70462 cell cycle protein MesJ - Aquifex aeolicus
gb|AAC07685.1| (AE000761) cell cycle protein MesJ [Aquifex aeolicus]
Length = 317
Score = 72.4 bits (176), Expect = 7e-12
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 13 EGKNLLGFSGGLDSTCLFFLLVGENIVF---DIALVDYN----TQKQRLEIIQHAQKLAK 65
E + L+ FSGG+DS L +L+ F ++AL +N +R E + ++ AK
Sbjct: 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDE--EFCKEFAK 81
Query: 66 THHKKCYIHH------APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEW 119
+ K ++ A + + E R +RY F + +++ + + AHHLND LE
Sbjct: 82 ERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLET 141
Query: 120 FLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSL 177
L+ ++G GL+ L+ F E+ I RPL Y + ++ A K L++ ED++N +
Sbjct: 142 SLLFFTRGTGLDGLIGFLPKEE----VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYEV 197
Query: 178 KFKRNCFRKNY------ANSLMQDYSKGIIQSFK----FLDQEKERLY 215
RN R N ++D +++ + FL++E ++LY
Sbjct: 198 SIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLY 245
>ref|NP_212922.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51728|Y788_BORBU Hypothetical protein BB0788
pir||C70198 conserved hypothetical protein BB0788 - Lyme disease spirochete
gb|AAC67121.1| (AE001177) conserved hypothetical protein [Borrelia burgdorferi]
Length = 440
Score = 70.9 bits (172), Expect = 2e-11
Identities = 77/323 (23%), Positives = 138/323 (41%), Gaps = 45/323 (13%)
Query: 11 LKEGKNLLGFSGGLDSTCLF----FLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKT 66
L + + ++ FSGG DST L + L I F A + +Q EI +H +
Sbjct: 21 LDKNRVIVAFSGGADSTALLLNLKYYLSNNVIAFYFAHFIRSDNEQNQEI-EHVKGFCDL 79
Query: 67 HH-----KKCYIH---HAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLE 118
++ KKC I + ++ + E ARK RY E +KE+ ++ LAH+ ND++E
Sbjct: 80 YNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANYIALAHNENDQIE 139
Query: 119 WFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSS 176
+M+ +G+ L+ L + + I+RPLL + ++ ++ FF D +N+
Sbjct: 140 TIIMRFFQGSFLDGLSGIPSVNRN----IIRPLLEVSRLEIENFLSLNNIGFFVDSTNAQ 195
Query: 177 LKFKRNCFRKNYANSLMQDYSKGIIQSFKFLDQ---------EKERLYPLTIVSQMHGI- 226
+ RN R N ++ + + KG + K + + K+ +P+ +
Sbjct: 196 NLYLRNRVRNNLLPAIKKVF-KGYEKCLKRISEFSKEFADYFGKDEFFPVEKGKYYYSFD 254
Query: 227 --TFFKYSQNALF-MVDKILKQKGYVLSFSQKEEIKRSFFSLEIAQK----------FII 273
TF + + +F ++ KIL +G S K F +EI +K F +
Sbjct: 255 LKTFLDFPKYLVFRLIFKILNSEGIAAKVSYK--ALNEAFKVEINRKKNNVLLKTNDFFL 312
Query: 274 ESDKEHVFIALKPPKTLSMPKDF 296
E + + K + P DF
Sbjct: 313 EKRHNKINLIFKRDEKFYKPFDF 335
>ref|NP_469596.1| (NC_003212) fusion protein, N-terminal part similar to B. subtilis
YacA protein, C-terminal part similar to
hypoxanthine-guanine phosphoribosyltransferase [Listeria
innocua]
emb|CAC95484.1| (AL596164) fusion protein, N-terminal part similar to B. subtilis
YacA protein, C-terminal part similar to
hypoxanthine-guanine phosphoribosyltransferase [Listeria
innocua]
Length = 648
Score = 70.5 bits (171), Expect = 3e-11
Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 21/214 (9%)
Query: 13 EGKNLLGFSGGLDSTCLFFLLVGENIVFDIAL--------VDYNTQKQRLEIIQHAQK-- 62
+ K L+ SGG DS L L N+V A+ + N +K++L + ++
Sbjct: 21 DDKLLVAVSGGPDSFALLHFLWSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80
Query: 63 ----LAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLE 118
+ + KK A K+ E AR +RYDFFE ++ E++ L+LAHH +D++E
Sbjct: 81 IPFFIEEVDVKK----RAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHADDQIE 136
Query: 119 WFLMQLSKGAGLNTLLSFQ-AYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFE-DDSNSS 176
LM+L +G+ Q E R YAI L T + ++ K +E D+SN+S
Sbjct: 137 TILMRLVRGSSSIGWSGIQPKREVRGGYAIRPFLPITKAEIIEYATKHALPYEIDESNTS 196
Query: 177 LKFKRNCFRKNYANSLMQDYSKGIIQSFKFLDQE 210
++ RN +R L ++ + + + FK +E
Sbjct: 197 QEYTRNRYRTQLLPFLSKE-NPAVYEHFKRFSEE 229
>ref|NP_484975.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB72889.1| (AP003584) ORF_ID:all0932~hypothetical protein [Nostoc sp. PCC
7120]
Length = 342
Score = 70.1 bits (170), Expect = 3e-11
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 14/210 (6%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFD----IALVDYNTQKQRLEIIQHAQKLAKTHHKKCY 72
L+ SGG DS CL LL+ + IA D+ + H + LA+ Y
Sbjct: 27 LVAVSGGQDSLCLIKLLLDLQPKWGWELGIAHCDHRWRADSQANADHVKNLAENWGVSFY 86
Query: 73 IHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNT 132
+ A K N E AR+ RY + + H+Y++++ H +DR E L L +G G +
Sbjct: 87 LETATKPV-NSEATAREWRYQALSAIAQAHNYQYIVTGHTASDRAETLLYNLMRGTGADG 145
Query: 133 L--LSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFRKNY 188
L L++Q E+ +VRPLL + + ++ L +ED +N LK+ RN R+
Sbjct: 146 LQALTWQR-PLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKYARNRIRQEL 204
Query: 189 ANSLMQDYSK----GIIQSFKFLDQEKERL 214
L +++ I Q+ + L + E L
Sbjct: 205 IPYLQANFNPQAELAIAQTAELLQADVEYL 234
>gb|AAM74001.1|AF467001_2 (AF467001) YacA/HprT-like protein [Listeria monocytogenes]
Length = 648
Score = 70.1 bits (170), Expect = 3e-11
Identities = 56/218 (25%), Positives = 97/218 (43%), Gaps = 22/218 (10%)
Query: 13 EGKNLLGFSGGLDSTCLFFLLVGENIV----FDIALVDYNTQKQRLEIIQHAQKLAKTHH 68
+ K L+ SGG DS L L N+V +A ++++ ++ + ++
Sbjct: 21 DDKLLVAVSGGPDSLALLHFLWNSNLVPKEAISVAHINHHLRENAANEQNVVEAFCESQG 80
Query: 69 KKCYIHH------APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLM 122
YI A + E AR +RYDFFE ++ E L LAHH +D++E LM
Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140
Query: 123 QLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFK 180
+L +G+ Q + + +RP L K + A+ +L + D+SN+S ++
Sbjct: 141 RLVRGSASIGWSGIQPKRELKGGQAIRPFLPITKAEIIDYAQKHELAYEIDESNTSQEYT 200
Query: 181 RNCFRKNYANSLMQD----------YSKGIIQSFKFLD 208
RN +R L Q+ +S+ + F+FL+
Sbjct: 201 RNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLE 238
>ref|NP_239943.1| (NC_002528) cell cycle protein mesJ [Buchnera sp. APS]
sp|P57211|MESJ_BUCAI Putative cell cycle protein MESJ homolog
dbj|BAB12829.1| (AP001118) cell cycle protein mesJ [Buchnera sp. APS]
Length = 440
Score = 69.3 bits (168), Expect = 6e-11
Identities = 68/245 (27%), Positives = 108/245 (43%), Gaps = 33/245 (13%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIAL----VDYNTQKQRLEIIQHAQKLAKTHHKKCY 72
L+ +SGGLDST L + L+ + I + +++N + +H +K+ C
Sbjct: 15 LVAYSGGLDSTVLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKI-------CN 67
Query: 73 IHHAPKIAHNFEMQAR------KIRYDFFETLIKEHSYKHLIL--AHHLNDRLEWFLMQL 124
I+H P I N ++ + K+R + +I H + IL HH+ND+ E F + L
Sbjct: 68 INHIPLIVENINIKNKTNNLEEKLRIKRYN-IIYNHLFSDEILLTGHHINDQCETFFLSL 126
Query: 125 SKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSLKFKRN 182
+G+G L S + IVRP L K L+T A K L + ED SN ++ + RN
Sbjct: 127 KRGSGPTGLSSMSFETLFGTKKIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186
Query: 183 CFRKNYANSLMQDYS---KGIIQSFKFLDQE--------KERLYPLTIVSQMHGITFFKY 231
R L + +S K ++ QE +ER+Y L I FK
Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTIICQQETRLLNDFLRERIYKLIKFDDSLNIENFKN 246
Query: 232 SQNAL 236
+ A+
Sbjct: 247 IKQAM 251
>ref|NP_266175.1| (NC_002662) cell cycle protein MesJ [Lactococcus lactis subsp.
lactis]
gb|AAK04117.1|AE006241_6 (AE006241) cell cycle protein MesJ [Lactococcus lactis subsp.
lactis]
Length = 423
Score = 68.6 bits (166), Expect = 1e-10
Identities = 89/322 (27%), Positives = 139/322 (42%), Gaps = 49/322 (15%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLL--VGENIVFDIALVDYN---TQKQRLEIIQHAQKLAKT 66
K+ K LL SGG DS LF L + E + ++ L N ++ + E I + K
Sbjct: 20 KDSKILLALSGGKDSMTLFNWLYDLKEVLGIELGLAHINHGLREESKFEEIALREMATKL 79
Query: 67 HHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSK 126
K I+ E AR RY FFE L+ +Y L+ AHH D +E LM+
Sbjct: 80 ---KVPIYVDKFTGEFTEKNARDFRYQFFEKLMIGENYNILLTAHHQGDLVETVLMRQIT 136
Query: 127 GAGLNTLLSFQAYEKRESYA---IVRPLLYTPKDTLKTLAKDLKFFEDDSNSSLKFKRNC 183
G L +L Q R+ +A ++RPLL K+ L ++ED +N L + RN
Sbjct: 137 GRPLRSL---QGIADRQPFAGGQLIRPLLKFTKEELDAQT----YYEDSTNQGLDYFRNR 189
Query: 184 FRKNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYSQNALFMVDKIL 243
R L ++ + QS L E ++ L +++Q K S+ L +VD+ +
Sbjct: 190 IRNQLIPELKKE-NPQFSQSISDLSSEIKK--ALAVINQ-------KISE--LEIVDEKI 237
Query: 244 KQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESDKEHVFIALKPPKTLSMPKDFKDRARRL 303
K ++ SQ +E+ Q FI+++ F A P +S K F + +
Sbjct: 238 SSKKFI---SQTKEL----------QHFILQA-----FFAQYPEIEVS-KKKFAELLHII 278
Query: 304 DIPKRLRPVLYAEFLKQPTHDF 325
+ P++ L EF T DF
Sbjct: 279 NRPQQYFAKLNKEFYFVKTKDF 300
>ref|NP_563388.1| (NC_003366) probable cell-cycle protein [Clostridium perfringens]
dbj|BAB82178.1| (AP003194) probable cell-cycle protein [Clostridium perfringens]
Length = 469
Score = 68.2 bits (165), Expect = 1e-10
Identities = 70/301 (23%), Positives = 133/301 (43%), Gaps = 35/301 (11%)
Query: 3 DFKTHLEPLKEG-KNLLGFSGGLDSTCLFFLL--VGENIVFDIALVDYN---TQKQRLEI 56
DF +K G K L+ SGG DS CL +L + E + ++ N + L+
Sbjct: 7 DFIKENSMIKSGDKVLVALSGGPDSVCLLHILSELRELLHIEVYAAHVNHCLRGESALKD 66
Query: 57 IQHAQKLAKTHHKKCYIHHAP--KIAH----NFEMQARKIRYDFFETLIKEHSYKHLILA 110
+ ++L K + KC++ KI+ + EM R+ RY FFE L E+S + +A
Sbjct: 67 EAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIA 126
Query: 111 HHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKF 168
H+ ND+ E +M+ +G G+ L+ + +RP+L + ++ + +L
Sbjct: 127 HNANDQAETLIMRALRGTGIEGLVGIKPV---RDGIFIRPILILRRKEIEEYCEINNLNP 183
Query: 169 FEDDSNSSLKFKRNCFRKNYANSLMQDYSKGII-----------QSFKFLDQEKERLYPL 217
D++N + RN R + +++ I+ + +F+ +E E+ +P
Sbjct: 184 RIDETNLEEIYSRNKIRLKAIPFIEDNFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPK 243
Query: 218 TIVSQMHGITFFKYSQNAL-FMVDKILKQKGYVLSFSQKEEIKRSFFSLEIAQKFIIESD 276
+ + H I + + N ++ +I+K+ + +S K + F L+ Q I D
Sbjct: 244 LCIKENHSILIKEEAFNEKEALLTRIIKKALFEVS------SKHNNFELKHIQDIIALKD 297
Query: 277 K 277
K
Sbjct: 298 K 298
>ref|NP_404675.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89904.1| (AJ414146) conserved hypothetical protein [Yersinia pestis]
Length = 460
Score = 67.4 bits (163), Expect = 2e-10
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 17 LLGFSGGLDSTCLFFLLV--GENIVFDIAL----VDYNTQKQRLEIIQHAQKLA---KTH 67
L+GFSGGLDST L LLV + ++ ++ + + + Q ++H + K
Sbjct: 26 LVGFSGGLDSTVLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQWKIE 85
Query: 68 HKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
K ++ P+ + E AR RY F + L+ A HL+D+ E FL+ L +G
Sbjct: 86 LKVVRVNIDPR-QNGIEAAARTARYQAFSANLAAKEV--LLTAQHLDDQCETFLLALKRG 142
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCFR 185
+G L + A ++RPLL ++ L+ A+ L++ EDDSN +F RN R
Sbjct: 143 SGPAGLSAMAAKMPFAHSQLLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFDRNFLR 202
Query: 186 KNYANSLMQ 194
N L Q
Sbjct: 203 LNVLPILNQ 211
>ref|NP_654012.1| (NC_003995) UPF0021, Uncharacterized protein family UPF0021
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 476
Score = 65.9 bits (159), Expect = 6e-10
Identities = 77/321 (23%), Positives = 136/321 (41%), Gaps = 31/321 (9%)
Query: 1 MQDFKTHLEPLKEGKNLL-GFSGGLDSTCLFFLLVGENIV--FDIAL--VDYNTQ-KQRL 54
+ DF + LKE ++ G SGG DS L + L+ + F+I + VD+ + +
Sbjct: 9 VDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYLLEKRAAKQFEIVVAHVDHMFRGDESH 68
Query: 55 EIIQHAQKLAKTHHKKCYI------HHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLI 108
E +Q Q L K C + + N ++ AR+ RY F E ++K++ +++
Sbjct: 69 EDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKYDARYVA 128
Query: 109 LAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKF 168
L HH +D++E LM+L +G+ + ++RPLL K+ + +LK
Sbjct: 129 LGHHGDDQVETILMRLVRGSTPKGYAGIAVKRPFHNGYLIRPLLGVTKEEIVNYCNELKI 188
Query: 169 FE--DDSNSSLKFKRNCFRKNYANSLMQDYSK--GIIQSFKFLDQEKERLYPLTIVSQMH 224
D SN + RN RK L ++ + Q F QE E +M+
Sbjct: 189 IPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEAYLQELAFEKMN 248
Query: 225 GITFFKYSQNALFMVDKI------LKQKG--YVLSFSQKEEIKRSFFSLEIAQKFIIESD 276
+ K + + L+++G +L++ + +I S S+ I + +IE
Sbjct: 249 KVITKKSDKQISLSIPTFESMSMPLQRRGIQLILNYLYEYKIPSSLSSIHIDK--VIE-- 304
Query: 277 KEHVFIALKPPKTLSMPKDFK 297
F +P +L P D K
Sbjct: 305 ---FFKRTQPSGSLDFPGDLK 322
>ref|NP_038397.1| (NC_002186) hypothetical chloroplast RF62 [Mesostigma viride]
sp|Q9MUR3|YC62_MESVI Hypothetical 36.8 kDa protein YCF62 (RF62)
gb|AAF43838.1|AF166114_50 (AF166114) hypothetical chloroplast RF62 [Mesostigma viride]
Length = 310
Score = 64.7 bits (156), Expect = 1e-09
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVG--ENIVFDIALVD------YNTQKQRLEIIQHAQKL 63
K + L+ SGG DS L +LV +D+ +V+ +++K +I Q AQ L
Sbjct: 20 KNDRILIAASGGQDSISLIKILVELQPQWNWDLGIVNCDHSWNQSSRKGSSQIAQIAQLL 79
Query: 64 AKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQ 123
++ H E +AR+ RY E + + Y ++ AH+ +DR+E F
Sbjct: 80 NIDFYQIVTCHQLIN-----EEKAREWRYQKIEDIAFSNKYNVIVTAHNASDRIETFFFN 134
Query: 124 LSKGAGLNTLLSFQAYEKRES-YAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFK 180
L +G + + S S IVRPLL T + LK K+ L + D SN SL FK
Sbjct: 135 LLRGTSITGVQSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHLPLWPDTSNQSLFFK 194
Query: 181 RNCFRK 186
RN RK
Sbjct: 195 RNRIRK 200
>ref|NP_231873.1| (NC_002505) mesJ protein [Vibrio cholerae]
pir||D82100 mesJ protein VC2242 [imported] - Vibrio cholerae (group O1 strain
N16961)
gb|AAF95386.1| (AE004296) mesJ protein [Vibrio cholerae]
Length = 440
Score = 61.6 bits (148), Expect = 1e-08
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 15 KNLLGFSGGLDSTCLFFLLVG--ENIVFDIALVD--YNTQKQRLEIIQHAQKLAKTHHKK 70
K LL SGG+DS L LL + +D+ V + + Q+ Q+ +
Sbjct: 19 KILLALSGGVDSQVLLALLARGRDEFGWDVTAVHVHHGLSPNADQWAQYCQRCCREVGMA 78
Query: 71 CYIHHAP---KIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG 127
C I + + E AR+ RY + + L+L H +D+LE FL+ L +G
Sbjct: 79 CQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQTL--LLLGQHADDQLETFLLALKRG 136
Query: 128 AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFR 185
+G L + AY ++RPLL + ++ AK L + D+SN+ ++++RN R
Sbjct: 137 SGPKGLAAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLTWVIDESNADIRYERNFLR 196
>ref|NP_414730.1| (NC_000913) cell cycle protein [Escherichia coli K12]
sp|P52097|MESJ_ECOLI Putative cell cycle protein mesJ
pir||D64743 cell cycle protein mesJ - Escherichia coli
emb|CAA90751.1| (Z50870) similar to Acc.No. D26185 [Escherichia coli]
dbj|BAA08428.1| (D49445) YaeN [Escherichia coli]
gb|AAB08617.1| (U70214) hypothetical [Escherichia coli]
gb|AAC73299.1| (AE000128) cell cycle protein [Escherichia coli K12]
dbj|BAA77863.1| (D83536) Cell cycle protein MesJ. [Escherichia coli]
Length = 432
Score = 60.1 bits (144), Expect = 4e-08
Identities = 50/187 (26%), Positives = 76/187 (39%), Gaps = 11/187 (5%)
Query: 17 LLGFSGGLDSTCLFFLLV-----GENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
L+ FSGGLDST L LV + V + + H + + +
Sbjct: 16 LVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPL 75
Query: 72 YIHHAPKIAHNF--EMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAG 129
+ E QAR+ RY F + L+ A HL+D+ E FL+ L +G+G
Sbjct: 76 VVERVQLAQEGLGIEAQARQARYQAFARTLLPGEV--LVTAQHLDDQCETFLLALKRGSG 133
Query: 130 LNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRNCFRKN 187
L + + ++RPLL + L A+ DL++ ED+SN + RN R
Sbjct: 134 PAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLR 193
Query: 188 YANSLMQ 194
L Q
Sbjct: 194 VVPLLQQ 200
>ref|NP_662497.1| (NC_002932) MesJ protein [Chlorobium tepidum TLS]
gb|AAM72839.1| (AE012916) MesJ protein [Chlorobium tepidum TLS]
Length = 331
Score = 59.7 bits (143), Expect = 5e-08
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 82 NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEK 141
+ E AR +RYDFF L +E SY + HH +D E L L +GAG++ L +
Sbjct: 101 SIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVLFNLFRGAGISGLRGIRV--- 157
Query: 142 RESYAIVRPLL-YTPKDTLKTLAKDLKFFEDD-SNSSLKFKRNCFRKNYANSLMQDYSKG 199
AI+RPLL +T ++ + L + + DD +N +++ RN R + + ++
Sbjct: 158 -RHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEGIEYDRNFIRNRVIPVIEERFAHK 216
Query: 200 IIQSFKFLDQEKERL 214
++ S + + + L
Sbjct: 217 LMPSLQRISEHAGEL 231
>gb|AAG12421.1| (AY005137) MesJ [Chlorobium tepidum]
Length = 351
Score = 59.7 bits (143), Expect = 5e-08
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 82 NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEK 141
+ E AR +RYDFF L +E SY + HH +D E L L +GAG++ L +
Sbjct: 121 SIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVLFNLFRGAGISGLRGIRV--- 177
Query: 142 RESYAIVRPLL-YTPKDTLKTLAKDLKFFEDD-SNSSLKFKRNCFRKNYANSLMQDYSKG 199
AI+RPLL +T ++ + L + + DD +N +++ RN R + + ++
Sbjct: 178 -RHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEGIEYDRNFIRNRVIPVIEERFAHK 236
Query: 200 IIQSFKFLDQEKERL 214
++ S + + + L
Sbjct: 237 LMPSLQRISEHAGEL 251
>ref|NP_252328.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||C83192 conserved hypothetical protein PA3638 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07026.1|AE004783_11 (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 442
Score = 58.9 bits (141), Expect = 8e-08
Identities = 59/202 (29%), Positives = 87/202 (42%), Gaps = 11/202 (5%)
Query: 8 LEPLKE-GKNLLGFSGGLDSTCLFFLLV----GENIVFDIAL-VDYNTQKQRLEIIQHAQ 61
L P +E G + FSGGLDST L LL E + AL V + Q H Q
Sbjct: 14 LAPWREAGGWCVAFSGGLDSTVLLHLLAQLARSEALPALSALHVHHGLQAAADGWPAHCQ 73
Query: 62 KLAKTHHKKCYIHHAP-KIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWF 120
+ ++ + + + E AR RY F+ + E L+ A HL+D+ E
Sbjct: 74 AVCRSLGIPLRVERVQVAVGGSIEQAARDARYRAFQANLGEGQV--LLTAQHLDDQAETL 131
Query: 121 LMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLK 178
L +L +GAGL L + A + RPLL + L+ A+ L + ED SN +
Sbjct: 132 LFRLLRGAGLRGLAAMPASRPLGGGRLCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPR 191
Query: 179 FKRNCFRKNYANSLMQDYSKGI 200
F RN R+ L + + +
Sbjct: 192 FSRNYLRREIMPRLASHWPQAV 213
>ref|NP_519291.1| (NC_003295) PUTATIVE CELL CYCLE PROTEIN [Ralstonia solanacearum]
emb|CAD14872.1| (AL646063) PUTATIVE CELL CYCLE PROTEIN [Ralstonia solanacearum]
Length = 462
Score = 58.5 bits (140), Expect = 1e-07
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 84 EMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRE 143
E AR+ RY + L E L+ AHHL+D+ E L+QL +GAGL+ L + +R
Sbjct: 103 EEAAREARYAALDALCAETGATLLLTAHHLDDQAETVLLQLLRGAGLDGLSAMPMARERR 162
Query: 144 SYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRNCFR 185
++RP L P+ ++ A+ L + ED SN ++ RN R
Sbjct: 163 -VTLLRPWLDVPRGDIEAYARAHALAWVEDPSNGDARYARNALR 205
>ref|NP_072746.1| (NC_000908) conserved hypothetical protein [Mycoplasma genitalium]
sp|P47330|Y084_MYCGE Hypothetical protein MG084
pir||C64209 hypothetical protein homolog MG084 - Mycoplasma genitalium
gb|AAC71302.1| (U39689) conserved hypothetical protein [Mycoplasma genitalium]
Length = 290
Score = 58.2 bits (139), Expect = 1e-07
Identities = 55/184 (29%), Positives = 86/184 (45%), Gaps = 26/184 (14%)
Query: 13 EGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCY 72
E + + G SGG DS + L + + + + V+YNT+ L QKL + + +K
Sbjct: 4 EKQYIAGVSGGSDS--MLMLKLYQKKIACVVHVNYNTRSTSLR----DQKLVEQYCQKLN 57
Query: 73 IHHAPKIAH----------NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLM 122
I P + H NF+ QARKIR+D F+ K + L+LAHH +D +E M
Sbjct: 58 I---PLVVHTVDPDLVWKKNFQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQAKM 114
Query: 123 QLSKGAGLNTLLSFQAYEKRESYA--IVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLK 178
QL + + + E Y I RPL+ KD + L + + + D++N
Sbjct: 115 QLD---AKKRAVYYGIKTRCELYGLKIYRPLMKYWKDEIIALCRQDHIPYEIDETNKLPI 171
Query: 179 FKRN 182
+KRN
Sbjct: 172 YKRN 175
>ref|NP_438566.1| (NC_000907) cell cycle protein (mesJ) [Haemophilus influenzae Rd]
sp|P44689|MESJ_HAEIN Putative cell cycle protein mesJ homolog
pir||D64151 hypothetical protein HI0404 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22063.1| (U32723) cell cycle protein (mesJ) [Haemophilus influenzae Rd]
Length = 430
Score = 58.2 bits (139), Expect = 1e-07
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 13/208 (6%)
Query: 1 MQDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLLVG--------ENIVFDIALVDYNTQKQ 52
+ D + L+ L+ SGGLDST L L + + +
Sbjct: 4 LSDIEKQLQKATAQAFLIALSGGLDSTVLLSLFAKLCQKQPHLPPLSIRAIHIHHGLSPN 63
Query: 53 RLEIIQHAQKLAKTHHKKCYIHHAPKIAHN-FEMQARKIRYDFFETLIKEHSYKHLILAH 111
+H Q L I N E AR+ RY + ++ + + L+ AH
Sbjct: 64 ADSWAKHCQDLCDQFQIPLIIERVQVDKTNGIEAGAREARYQAIKKYLQ--TQEMLVTAH 121
Query: 112 HLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFF 169
HLND+ E F + L +G+GL L + Q I+RPLL + L+ A + L +
Sbjct: 122 HLNDQTETFFLALKRGSGLKGLGAMQQQSVLFGMPILRPLLGFTRTQLENYAQKEKLNWI 181
Query: 170 EDDSNSSLKFKRNCFRKNYANSLMQDYS 197
D+SN ++ RN R L + ++
Sbjct: 182 TDESNEDNRYDRNFLRNEILPELRERWA 209
>pir||T31465 cell cycle protein homolog mesJ - Heliobacillus mobilis
gb|AAC84036.1| (AF080002) cell cycle protein MesJ [Heliobacillus mobilis]
Length = 470
Score = 57.4 bits (137), Expect = 2e-07
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 28/222 (12%)
Query: 17 LLGFSGGLDSTCLFFLL--VGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHK---KC 71
++ SGG DS CL L V ++A YN + E + A +A+ ++
Sbjct: 25 VIALSGGADSVCLLLLFKKVSPQFGIELAAAHYNHGMRGKESDEDAAFVAELTNRLQVPL 84
Query: 72 YIHHAP----KIAHNFEMQA-RKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSK 126
++ AP + +M+A R++RYDF ++ + + LAHH +D E L + +
Sbjct: 85 FLETAPLKWWQQEPGTKMEAARRLRYDFLSRSAEQAGARWIALAHHADDMAETVLFHMLR 144
Query: 127 GAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCF 184
G+G+ L A KR + VRPLL + L+ A+ + D SN S + RN
Sbjct: 145 GSGIKGLSGIPA--KRGPF--VRPLLPFRRKELEEFLKAEGQHWRHDSSNDSDVYTRNRI 200
Query: 185 RKNYANSLMQDYSKGIIQSF-----------KFLDQEKERLY 215
R +L+ ++ ++++ +FLD+E E +Y
Sbjct: 201 RHQIMPALL-SFNPKLVETLCRNADLLRADAEFLDRECELVY 241
>ref|NP_245226.1| (NC_002663) MesJ [Pasteurella multocida]
gb|AAK02373.1| (AE006064) MesJ [Pasteurella multocida]
Length = 431
Score = 57.4 bits (137), Expect = 2e-07
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 10 PLKEGKNLLGFSGGLDSTCLFFLLVG-----ENIVFDIALVDYNTQKQRLEIIQHAQKLA 64
P + + L+GFSGGLDST L L +++ + + + H Q++
Sbjct: 14 PPTQHQFLIGFSGGLDSTALLLLFAKLREKQPHLMLRAIHIHHGLSANADAWVTHCQQIC 73
Query: 65 KTHHKKCYIHHAPKIAHN-FEMQARKIRYDFFETLIKEHSYKHLILA--HHLNDRLEWFL 121
+ + H E AR+ RY I++H + + A HH D+ E F
Sbjct: 74 QQVAIPLIVEQVKIDQHKGIEAGAREARYQ----AIRQHLLPNEMFATAHHQQDQTETFF 129
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKF 179
+ L +G+GL L + Q I RPLL + L K + ED+SN+ ++
Sbjct: 130 LALKRGSGLAGLGAMQRKSTLYCLPICRPLLTFTRQMLLDYVKQAGCPWVEDESNTDSRY 189
Query: 180 KRNCFRKNYANSLMQ 194
+RN R L Q
Sbjct: 190 ERNFLRHEVLPRLRQ 204
>ref|NP_349800.1| (NC_003030) Cell cycle protein MesJ ortholog, ATPase of the PP-loop
superamily [Clostridium acetobutylicum]
gb|AAK81140.1|AE007816_4 (AE007816) Cell cycle protein MesJ ortholog, ATPase of the PP-loop
superamily [Clostridium acetobutylicum]
Length = 461
Score = 57.0 bits (136), Expect = 3e-07
Identities = 49/206 (23%), Positives = 94/206 (44%), Gaps = 16/206 (7%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQ-RLEIIQHAQKLAKTHHKKCYIHH 75
++ SGG DS CL +L F+ ++ + R E ++ K +K I
Sbjct: 22 VVAVSGGPDSICLLHILFKLKDKFNTSICAAHVNHCIRGEAADKDEEYVKKFCEKLDIQF 81
Query: 76 ------APKIAH----NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLS 125
KIAH + EM R+IRY FFE + + + +AH+ ND+ E +M++
Sbjct: 82 YVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERFKANKIAIAHNANDQAETIMMRII 141
Query: 126 KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFE--DDSNSSLKFKRNC 183
+G G + + R+ Y +RPL+ + +++ +D K D +N + RN
Sbjct: 142 RGTGTEGIKGIRPV--RDGY-YIRPLIEIRRSSIEKYCEDEKLMPRIDATNLERDYNRNK 198
Query: 184 FRKNYANSLMQDYSKGIIQSFKFLDQ 209
R + +++++++ I+ + L +
Sbjct: 199 IRLDLIPYIVKNFNEDIVGALNRLGE 224
>ref|NP_285882.1| (NC_002655) cell cycle protein [Escherichia coli O157:H7 EDL933]
ref|NP_308217.1| (NC_002695) cell cycle protein MesJ [Escherichia coli O157:H7]
gb|AAG54490.1|AE005194_11 (AE005194) cell cycle protein [Escherichia coli O157:H7 EDL933]
dbj|BAB33613.1| (AP002550) cell cycle protein MesJ [Escherichia coli O157:H7]
Length = 431
Score = 56.6 bits (135), Expect = 4e-07
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 13/188 (6%)
Query: 17 LLGFSGGLDSTCLFFLLV-----GENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
L+ FSGGLDST L LV V + + H + + +
Sbjct: 16 LVAFSGGLDSTVLLHQLVQWRTENPGGALRAIHVHHGLSANADAWVTHCENVCQQWQVPL 75
Query: 72 YIHHAPKIAH--NFEMQARKIRYD-FFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGA 128
+ E QAR+ RY F TL+ + L+ A HL+D+ E FL+ L +G+
Sbjct: 76 VVERVQLAQEGLGIEAQARQARYQAFARTLLPG---EVLVTAQHLDDQCETFLLALKRGS 132
Query: 129 GLNTLLSFQAYEKRESYAIVRPLLYTPKDTLK--TLAKDLKFFEDDSNSSLKFKRNCFRK 186
G L + + ++RPLL + L LA L++ ED+SN + RN R
Sbjct: 133 GPAGLSAMAEVSEFAGTRLIRPLLARTRGELAQWALAHGLRWIEDESNQDDSYDRNFLRL 192
Query: 187 NYANSLMQ 194
L Q
Sbjct: 193 RVVPLLQQ 200
>ref|NP_045149.1| (NC_001840) unknown [Cyanidium caldarium]
gb|AAF12945.1|AF022186_68 (AF022186) unknown [Cyanidium caldarium]
Length = 314
Score = 56.2 bits (134), Expect = 5e-07
Identities = 75/273 (27%), Positives = 113/273 (40%), Gaps = 27/273 (9%)
Query: 8 LEPLKEGKNLLGFSGGLDSTCLFFLLVG-ENIVFDIALVDYNTQKQRLEIIQHAQKL--A 64
LE +K K +LG SGG DS L LL F + + Y + RLE I +AQ+L
Sbjct: 19 LELIKR-KFVLGLSGGQDSLALLKLLCDYRKTYFGLLKLVYCDHRWRLESIANAQRLYYL 77
Query: 65 KTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQL 124
+ + + A + E Q+R RY + Y +L+ AH L+D E + +L
Sbjct: 78 SEYSNISFYYFATSTFLSSETQSRTWRYKNLLKISLSFEYSYLLTAHTLSDISETTIYRL 137
Query: 125 SKG---AGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSLKF 179
+ + +N LL Y K+ + +I RPL ++ L L + D +N L
Sbjct: 138 VRNLRISEINNLLFTFLYIKK-TLSISRPLASVTRNDTYWLCSLSYLPLWSDYTNYWLFL 196
Query: 180 KRNCFR-------KNYANSLMQDYSKGIIQSFKFLDQEKERLYPLTIVSQMHGITFFKYS 232
RN R KNY N ++ Y G I S K L L I + F Y+
Sbjct: 197 SRNRIRQELFPYLKNYFNCSLERYLDGFIYS------NKINLITLNIKLKKILSKIFGYT 250
Query: 233 QNALFMVDKILKQKGYVLSFSQKEEIKRSFFSL 265
+ L+ + K +L F + + R F L
Sbjct: 251 NDGLYFNVSLFK----LLPFFYQHILIRDFHFL 279
>ref|NP_109910.1| (NC_000912) similar to PP-loop superfamily ATPase/cell cycle
protein MESJ homologues [Mycoplasma pneumoniae]
sp|P75549|Y084_MYCPN Hypothetical protein MG084 homolog (G07_orf289)
pir||S73935 hypothetical protein yacA homolog G07_orf289 - Mycoplasma
pneumoniae (strain ATCC 29342)
gb|AAB96257.1| (AE000058) similar to PP-loop superfamily ATPase/cell cycle protein
MESJ homologues [Mycoplasma pneumoniae]
Length = 289
Score = 56.2 bits (134), Expect = 5e-07
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 12/181 (6%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHHA 76
+ G SGG DS L L + + V+YN + L + ++ K +H
Sbjct: 7 IAGVSGGPDSMLLLKLY--HKKIACVVHVNYNKRTTALRDQKMVEEYCKQLKVPLIVHTV 64
Query: 77 PKIA---HNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTL 133
P+ NF+ QARKIR++ F+ + L+LAHH +D +E MQL
Sbjct: 65 PEDTVWKKNFQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAKMQLD---ARKRA 121
Query: 134 LSFQAYEKRESYA--IVRPLLYTPKDTLKTLAKDLK--FFEDDSNSSLKFKRNCFRKNYA 189
+ + + E Y + RP + K+ + L ++ K + D++N+ +KRN R+ A
Sbjct: 122 MYYGIKTRGELYGMKVYRPFIKYWKNEILALCEEHKVPYGIDETNAQPIYKRNQVRQEIA 181
Query: 190 N 190
N
Sbjct: 182 N 182
>ref|NP_602768.1| (NC_003454) Cell cycle protein MesJ [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94067.1| (AE010500) Cell cycle protein MesJ [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 448
Score = 55.5 bits (132), Expect = 9e-07
Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 72/348 (20%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFD--IALVDYNTQKQRLEIIQHAQ---KLAKTHHKKC 71
++GFSGG DS L +L F+ I LV N + + + AK ++ +
Sbjct: 24 VVGFSGGPDSVFLVEMLKKLQYFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKNNLEI 83
Query: 72 YIHHAP------KIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLS 125
+I P ++ E R+ RY FF + ++ + AH+ +D++E FL +L
Sbjct: 84 FIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFLFRLI 143
Query: 126 KGAGLNTLLSFQAYEKRESYAIVRPL--LYTPKDTLKTLAK-DLKFFEDDSNSSLKFKRN 182
+G L L K ++ I+RP+ +Y KD L+ L K ++++ D +N +F RN
Sbjct: 144 RGTSLQGLEGI----KIKNNNIIRPISEIY-KKDILEYLNKNEIQYKIDKTNFENEFTRN 198
Query: 183 CFR----------------------------KNYANSL-MQDYSKG----IIQSFKFL-D 208
R N NSL + +Y+ I++ KFL D
Sbjct: 199 SIRLNLIPFIEERYNIKFKDKIFSLIEEIRENNQNNSLNLSNYTDSENRIILEKIKFLSD 258
Query: 209 QEKERLYPLTIVSQMHGITFFKYSQNALFMVDKILKQKGYVLSFSQKEEIKRSFFSLEIA 268
+K+ L L + + + ++N + ++ ++K G ++K ++ +S+ ++
Sbjct: 259 FDKKNLLSLFLNQKN-----IEVNRNKIDEINSLIKSNG-----TKKIDLDKSYRIVKDY 308
Query: 269 QKFIIESDKEHVFIALKPPKTLSMPK-----DFK---DRARRLDIPKR 308
IE KE+ I + K L +P DFK + + LDIPK+
Sbjct: 309 THLYIEEKKENFTIVNRVVK-LKIPSEQIFDDFKISVNIVKNLDIPKK 355
>ref|NP_077907.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||A82937 conserved hypothetical UU077 [imported] - Ureaplasma urealyticum
gb|AAF30482.1|AE002107_6 (AE002107) conserved hypothetical [Ureaplasma urealyticum]
Length = 333
Score = 54.7 bits (130), Expect = 1e-06
Identities = 38/128 (29%), Positives = 73/128 (56%), Gaps = 10/128 (7%)
Query: 82 NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEK 141
NF+ +AR IRYDFF+ + K+++ ++L +AH+ +D LE MQ ++ + L + E
Sbjct: 91 NFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYMQRAR---QSKALFYGIKES 147
Query: 142 RESYAIV--RPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFRK---NYANSLMQ 194
I+ RP+L+ K TL+ + +K+ D++N ++RN RK +++ + +
Sbjct: 148 NVINGIIVKRPVLFVRKQTLQRYCDENKIKYGIDETNELDIYERNRVRKIISSWSLNEVY 207
Query: 195 DYSKGIIQ 202
D+ K +I+
Sbjct: 208 DFKKFVIK 215
>ref|NP_326611.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13953.1| (AL445565) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 286
Score = 54.7 bits (130), Expect = 1e-06
Identities = 51/181 (28%), Positives = 87/181 (47%), Gaps = 12/181 (6%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHHA 76
L+ SGG DS L + +IV +A V+YN + + + ++ K I +
Sbjct: 3 LIAVSGGPDSMLLLDVFKHHDIV--VAHVNYNKRNSSKRDQKIVEDYCFKNNIKLEILNL 60
Query: 77 P--KIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNTLL 134
++ NF ARK R+DFF+ + ++++ ++LAHH +D +E FL+Q ++ L
Sbjct: 61 TDYEVKGNFHDWARKKRFDFFKLVYEKYNCDEILLAHHKDDFVETFLIQKNQ---KRKPL 117
Query: 135 SFQAYEKRESYA--IVRPLL--YTPKDTLKTL-AKDLKFFEDDSNSSLKFKRNCFRKNYA 189
+ K ++ I RP + Y LK L K + F +D++N + RN R N
Sbjct: 118 YWSIKSKNFNFGMNINRPFIHKYWKNQILKILDNKQIFFGQDETNKENIYLRNKIRNNLL 177
Query: 190 N 190
N
Sbjct: 178 N 178
>emb|CAB51028.1| (AJ243808) YaeN protein [Bradyrhizobium japonicum]
Length = 361
Score = 54.3 bits (129), Expect = 2e-06
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
Query: 17 LLGFSGGLDSTCLFFLL------VGENIVFDIALVDYNTQ----KQRLEIIQHAQKLAKT 66
+L SGG DS L +L + + VD+ + ++ E+ + A +L
Sbjct: 28 VLAVSGGPDSIALMWLAARWQRSLARGPRLTVVTVDHGLRAEAAREAREVKRLATELGLP 87
Query: 67 HHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSK 126
H + PK AR+ RY + H++ AH +D+ E LM+L +
Sbjct: 88 HRTLRWRGAKPKTG--LPAAAREARYRLLMQAARSAGASHVLTAHTRDDQAETLLMRLVR 145
Query: 127 GAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLK--FFEDDSNSSLKFKR 181
G+GL L + +R+ + RPLL PK L K K F +D +N F R
Sbjct: 146 GSGLAGLSAMARLTERDGIVLARPLLDVPKAQLIATLKRAKIGFADDPTNRDTAFTR 202
>ref|NP_228389.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9WZ48|Y579_THEMA Hypothetical protein TM0579
pir||D72358 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35664.1|AE001733_1 (AE001733) conserved hypothetical protein [Thermotoga maritima]
Length = 414
Score = 54.3 bits (129), Expect = 2e-06
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 11 LKEGKNLL-GFSGGLDSTCLFFLLVGENIVFDIAL----VDYNTQKQRLEIIQHAQKLAK 65
L+EG+++L SGG+DS L ++L + + I + +D+ ++ + +++ +
Sbjct: 2 LEEGEHVLVAVSGGIDSMTLLYVLRKFSPLLKIKITAAHLDHRIRESSRRDREFVERICR 61
Query: 66 THHKKCYIHHA--PKI----AHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEW 119
+ P + E AR++RYDF + K+ + LAHH ND LE
Sbjct: 62 QWNIPVETSEVDVPSLWKDSGKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDLLET 121
Query: 120 FLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSL 177
+ +L +G G L KRE + +RP L + ++ A+ ++ + D++N ++
Sbjct: 122 VVHRLIRGTGPLGLACIS--PKREEF--IRPFLVFKRSEIEEYARKNNVPYVVDETNYNV 177
Query: 178 KFKRNCFR 185
K+ RN R
Sbjct: 178 KYTRNFIR 185
>dbj|BAB02008.1| (AB020746) gene_id:MOB24.14~unknown protein [Arabidopsis thaliana]
Length = 614
Score = 52.8 bits (125), Expect = 6e-06
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 37/212 (17%)
Query: 15 KNLLGFSGGLDSTCLFFLLVGEN-------------------IVFDIALVDYNTQKQRLE 55
K LG SGG DS L L IV D L + + L
Sbjct: 56 KRALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELV 115
Query: 56 IIQHAQKLAKTHHKKC-YIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLN 114
+ +Q + C ++ PK+ H + AR++RY+ + + L++AHH +
Sbjct: 116 CSRVSQMGIRCEIASCDWVDGRPKLGH-LQEAAREMRYEMISNVCFRQQIEVLLIAHHAD 174
Query: 115 DRLEWFLMQLSKGAGLNTL-------------LSFQA-YEKRESYAIVRPLLYTPKDTLK 160
D+ E F+++LS+ +G+ L L A + K +S +VRPLL K+ +
Sbjct: 175 DQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMY 234
Query: 161 TLAK--DLKFFEDDSNSSLKFKRNCFRKNYAN 190
+ + + ED +N S F RN R + N
Sbjct: 235 KICQWGRQDWVEDPTNRSQLFVRNRIRTSIGN 266
>ref|NP_660462.1| (NC_004061) putative cell cycle protein MesJ [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gb|AAM67673.1| (AE014085) putative cell cycle protein MesJ [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 445
Score = 52.8 bits (125), Expect = 6e-06
Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 28/236 (11%)
Query: 17 LLGFSGGLDSTCLFFLLV-----GENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
L+ +SGG+DST L + ++ I +++N + +H K+ C
Sbjct: 15 LIAYSGGIDSTVLLYKMLKIKEKNPQIKIRAIHINHNLHPSSKKWEEHCIKI-------C 67
Query: 72 YIHHAPKIAHNFEMQARKIRYDFFETL-IKEHS--YKHLI------LAHHLNDRLEWFLM 122
+ + P I ++ +K + ETL IK ++ Y +L+ HHLND+ E +
Sbjct: 68 HKYKIPIITKEIKILLKK---NIEETLRIKRYNTIYNYLLNDEILLTGHHLNDQCETLFL 124
Query: 123 QLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSLKFK 180
L +G+G L IVRP L K L+ A +L+ ED SN ++ +
Sbjct: 125 SLKRGSGPTGLSGMSIENFLGKKRIVRPFLTKTKKELQKWACENNLESIEDFSNFNIDYD 184
Query: 181 RNCFRKNYANSLMQDYSKGIIQSFK--FLDQEKERLYPLTIVSQMHGITFFKYSQN 234
RN R L Q + + F+ + +E+ +L + + ++ + F S N
Sbjct: 185 RNFIRHKLIPILEQRWPFFLKNCFRTTVICREETKLKNIFLKEKIQNLINFDESLN 240
>ref|NP_454844.1| (NC_003198) cell cycle protein MesJ [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08695.1| (AL627266) cell cycle protein MesJ [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 430
Score = 52.0 bits (123), Expect = 1e-05
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 17/226 (7%)
Query: 11 LKEGKNLLGFSGGLDSTCLFFLLV-----GENIVFDIALVDYNTQKQRLEIIQHAQKLAK 65
L + L FSGGLDST L LV ++ + + ++H + + +
Sbjct: 11 LSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCE 70
Query: 66 THHKKCYIHHAPKIAHN---FEMQARKIRYDFF-ETLIKEHSYKHLILAHHLNDRLEWFL 121
+ +A N E AR+ RY F +TL+ L A HL+D+ E FL
Sbjct: 71 RWQVPLVVERVT-LADNGLGIEAHAREARYRAFAQTLLPGEV---LATAQHLDDQCETFL 126
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSLKF 179
+ L +G+G L + ++RPLL + TL+ A L + ED+SN +
Sbjct: 127 LALKRGSGPAGLSAMGERSPFAGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186
Query: 180 KRNCFRKNYANSLMQ--DYSKGIIQSFKFLDQEKERLYPLTIVSQM 223
RN R L Q + + L E+ERL + S +
Sbjct: 187 DRNFLRLRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDL 232
>ref|NP_623930.1| (NC_003869) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
gb|AAM25534.1| (AE013181) predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Thermoanaerobacter tengcongensis]
Length = 467
Score = 52.0 bits (123), Expect = 1e-05
Identities = 49/189 (25%), Positives = 80/189 (41%), Gaps = 21/189 (11%)
Query: 12 KEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKC 71
K+ K ++G SGG DS C+ +L F++ L Y + + A+K A+ K C
Sbjct: 26 KDDKIVMGISGGPDSLCMLDVLFNLKGKFNLKL--YVVHVNHMIRGEDAKKDAEFVEKLC 83
Query: 72 -------------YIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLE 118
+ A K+ + E R +RY FE +K + +AH+ ND E
Sbjct: 84 KDLDLPFFLFEENIPYLAKKMGLSEEQAGRYVRYKAFEETLKRVGGNKIAVAHNKNDVAE 143
Query: 119 WFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKFFE--DDSNSS 176
L+ + +G GL L+ K + I+RPL+ + ++ KD D +N
Sbjct: 144 TVLLNILRGTGLRGLIGI----KPVNGNIIRPLIEIERREIEKYLKDKNLHPRIDHTNYE 199
Query: 177 LKFKRNCFR 185
+ RN R
Sbjct: 200 DLYTRNKIR 208
>ref|NP_459241.1| (NC_003197) cell cycle protein [Salmonella typhimurium LT2]
gb|AAL19200.1| (AE008705) cell cycle protein [Salmonella typhimurium LT2]
Length = 430
Score = 52.0 bits (123), Expect = 1e-05
Identities = 59/226 (26%), Positives = 92/226 (40%), Gaps = 17/226 (7%)
Query: 11 LKEGKNLLGFSGGLDSTCLFFLLV-----GENIVFDIALVDYNTQKQRLEIIQHAQKLAK 65
L + L FSGGLDST L LV ++ + + ++H + + +
Sbjct: 11 LSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCE 70
Query: 66 THHKKCYIHHAPKIAHN---FEMQARKIRYDFF-ETLIKEHSYKHLILAHHLNDRLEWFL 121
+ +A N E AR+ RY F +TL+ L A HL+D+ E FL
Sbjct: 71 RWQVPLVVERVT-LADNGLGIEAHAREARYRAFAQTLLPGEV---LATAQHLDDQCETFL 126
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFFEDDSNSSLKF 179
+ L +G+G L + ++RPLL + TL+ A L + ED+SN +
Sbjct: 127 LALKRGSGPAGLSAMGERSPFAGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186
Query: 180 KRNCFRKNYANSLMQ--DYSKGIIQSFKFLDQEKERLYPLTIVSQM 223
RN R L Q + + L E+ERL + S +
Sbjct: 187 DRNFLRLRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDL 232
>ref|NP_284094.1| (NC_003116) hypothetical protein NMA1350 [Neisseria meningitidis
Z2491]
pir||A81904 hypothetical protein NMA1350 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84597.1| (AL162755) hypothetical protein NMA1350 [Neisseria meningitidis
Z2491]
Length = 426
Score = 50.1 bits (118), Expect = 4e-05
Identities = 52/184 (28%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 15 KNLLGFSGGLDSTCLFFLLVGEN----IVFDIALVDYNTQKQRLEIIQHAQK------LA 64
K + SGGLDS L LLV + D + + + + Q +
Sbjct: 13 KTAVALSGGLDSVVLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72
Query: 65 KTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQL 124
K C K E AR+ RY F E + L LAHH +D++E F++ +
Sbjct: 73 LETVKVC----VEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIETFMLAV 124
Query: 125 SKGAGLNTLLSFQAYEK-RESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKR 181
++G GL L + A E I RPLL + + A+ L ED+SN+ + R
Sbjct: 125 ARGGGLRALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLR 184
Query: 182 NCFR 185
N FR
Sbjct: 185 NRFR 188
>ref|NP_441601.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P74192|YC78_SYNY3 Hypothetical protein slr1278
pir||S75822 hypothetical protein slr1278 - Synechocystis sp. (strain PCC 6803)
dbj|BAA18281.1| (D90913) ORF_ID:slr1278~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 330
Score = 49.7 bits (117), Expect = 5e-05
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 24/267 (8%)
Query: 2 QDFKTHLEPLKEGKNLLGFSGGLDSTCLFFLL--VGENIVFDIALVDYNTQ-KQRLEIIQ 58
Q+ + L+ + L+ SGG DS CL LL + + + +A+ + + I
Sbjct: 12 QNLQRRFPELQGTRILVAVSGGQDSLCLLHLLNDLTKQWQWHLAVAHCDHRWPTDAGIAD 71
Query: 59 HAQKLAKTHHKKCYIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLE 118
H Q LA+ + K Y + E AR RY + K ++ ++ H +DR E
Sbjct: 72 HVQGLAQGY-KLPYFQRDAQDLPQTEAAARHWRYHALTAIAKAENFPVVMTGHTQSDRAE 130
Query: 119 WFLMQLSKGAGLNTLLSF-------QAYEKRESYAIVRPLLYTPKDTLKTLA--KDLKFF 169
L L +G+G + L + ++ + ++RPLL + + L +
Sbjct: 131 TLLFNLVRGSGSDGLQAMNWVRNLEESGSDKSPIRLIRPLLEISRQETGDFCQQQQLSVW 190
Query: 170 EDDSNSSLKFKRNCFRKNYANSLMQDYSKGIIQSF-----------KFLDQEKERLYPLT 218
ED N L ++RN R L + ++ + +S +L+Q +Y
Sbjct: 191 EDVLNEKLTYRRNRIRGELIPYLKKHFNPQVEKSLAQTVELLTAEVAYLEQVSGEIYQTL 250
Query: 219 IVSQMHGITFFKYSQNALFMVDKILKQ 245
+ + SQ L + +I++Q
Sbjct: 251 SQTDQKSLNCRLLSQKPLALQRRIIRQ 277
>pir||F75424 probable cell cycle protein MesJ/cytosine deaminase-related protein
- Deinococcus radiodurans (strain R1)
gb|AAF10777.1|AE001969_6 (AE001969) cell cycle protein MesJ, putative/cytosine
deaminase-related protein [Deinococcus radiodurans]
Length = 600
Score = 49.7 bits (117), Expect = 5e-05
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Query: 8 LEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTH 67
LEP + L+G SGG DS L L+ + +A +D+ + + ++ L
Sbjct: 50 LEPFVGRQVLVGVSGGADSVGLLRALLAVGALPAVAHLDHALRPESVDDAAWVSDLCARL 109
Query: 68 HKKCYIHH------APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 121
C + A + N E AR++RYD K + ++ AH D+ E L
Sbjct: 110 GVPCEVTRIDVGAVAARRNWNLEXAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAETVL 169
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDL--KFFEDDSNSSLKF 179
M+L +G G + Q R RP L + ++T + L + ED SN+ +F
Sbjct: 170 MELLRGEGRIRGIPPQRGRVR------RPWLNVGRAEIETYLRGLGQDWREDASNADPRF 223
Query: 180 KRNCFRK 186
R R+
Sbjct: 224 TRAWLRR 230
>ref|NP_294931.1| (NC_001263) cell cycle protein MesJ, putative/cytosine
deaminase-related protein [Deinococcus radiodurans]
Length = 600
Score = 48.9 bits (115), Expect = 8e-05
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Query: 8 LEPLKEGKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTH 67
LEP + L+G SGG DS L L+ + +A +D+ + + ++ L
Sbjct: 50 LEPFVGRQVLVGVSGGADSVGLLRALLAVGALPAVAHLDHALRPESVDDAAWVSDLCARL 109
Query: 68 HKKCYIHH------APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 121
C + A + N E AR++RYD K + ++ AH D+ E L
Sbjct: 110 GVPCEVTRIDVGAVAARRNWNLEBAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAETVL 169
Query: 122 MQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDL--KFFEDDSNSSLKF 179
M+L +G G + Q R RP L + ++T + L + ED SN+ +F
Sbjct: 170 MELLRGEGRIRGIPPQRGRVR------RPWLNVGRAEIETYLRGLGQDWREDASNADPRF 223
Query: 180 KRNCFRK 186
R R+
Sbjct: 224 TRAWLRR 230
>ref|NP_053993.1| (NC_000925) ORF327 [Porphyra purpurea]
sp|P51383|YC62_PORPU HYPOTHETICAL 39.2 KD PROTEIN YCF62 (ORF327)
pir||S73304 hypothetical protein 327 - red alga (Porphyra purpurea) chloroplast
gb|AAC08269.1| (U38804) ORF327 [Porphyra purpurea]
Length = 327
Score = 48.5 bits (114), Expect = 1e-04
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 19/221 (8%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIVFD--IALVDYNTQKQRLEIIQHAQ--KLAKTHHKKCY 72
L+ FSGG DS L LL N + I L+ ++ + + ++ Q A+ ++ Y
Sbjct: 28 LVAFSGGQDSLTLVKLLYDLNPFYRWRITLIHFDHRWRWDSMLASKQVFSFARYYNFPLY 87
Query: 73 IHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLNT 132
P N E +RK RY L ++++ ++LAH D E L L +G L+
Sbjct: 88 YFECPDYL-NTEEASRKWRYTTLIDLAVKNNFTKILLAHTATDSSETLLSNLFRGTSLDG 146
Query: 133 LLSF-QAYEKRESYAIVRPLL--YTPKDTLKTLAKDLKFFEDDSNSSLKFKRNCFRKN-- 187
L S + + +S IVRPLL Y + + L + D SN RN R+
Sbjct: 147 LASIGWSCQLAQSVYIVRPLLNFYRFETSWFCRKYYLPIWVDRSNYDYIMFRNRLRQELV 206
Query: 188 -YANSLMQD------YSKGIIQSF--KFLDQEKERLYPLTI 219
Y S Q YS + + FL+QE R+Y + I
Sbjct: 207 PYIKSYFQPNLEERCYSLSSLVKYDTDFLEQEALRIYFILI 247
>gb|AAL80000.1| (AY077630) RASPBERRY3 [Arabidopsis thaliana]
Length = 662
Score = 48.1 bits (113), Expect = 1e-04
Identities = 36/135 (26%), Positives = 65/135 (47%), Gaps = 17/135 (12%)
Query: 72 YIHHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLN 131
++ PK+ H + AR++RY+ + + L++AHH +D+ E F+++LS+ +G+
Sbjct: 163 WVDGRPKLGH-LQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQAELFILRLSRSSGVL 221
Query: 132 TL-------------LSFQA-YEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNS 175
L L A + K +S +V PLL K+ + + + + ED +N
Sbjct: 222 GLAGTAFASEIFSRNLQLDAKHMKNQSIRLVGPLLDFWKEDMYKICQWGRQDWVEDPTNR 281
Query: 176 SLKFKRNCFRKNYAN 190
S F RN R + N
Sbjct: 282 SQLFVRNRIRTSIGN 296
>ref|NP_297949.1| (NC_002488) cell cycle protein [Xylella fastidiosa 9a5c]
pir||B82778 cell cycle protein XF0659 [imported] - Xylella fastidiosa (strain
9a5c)
gb|AAF83469.1|AE003910_5 (AE003910) cell cycle protein [Xylella fastidiosa 9a5c]
Length = 437
Score = 47.8 bits (112), Expect = 2e-04
Identities = 46/178 (25%), Positives = 75/178 (41%), Gaps = 12/178 (6%)
Query: 17 LLGFSGGLDSTCLFFLLVGENIV----FDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCY 72
L+ FSGGLDST L L + + + + + H H+ + +
Sbjct: 18 LVAFSGGLDSTVLLHCLASQPTQRIHGLEAIHIHHGLHEHADAWTAHCAAFCTQHYIRLH 77
Query: 73 I---HHAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAG 129
I H + E AR R F ++ Y L LAHH +D+ E +L++ +G+
Sbjct: 78 IARVHVSHNSGQGLEAAARTARRAAFAHTLQHGHY--LALAHHCDDQAETWLLRALRGS- 134
Query: 130 LNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFR 185
+ L + + + + RPLL + L A+ L + ED SN+ L+ RN R
Sbjct: 135 CDGLAAMRPLTPFAAGHLWRPLLTHSRAQLLDYAQQQHLDWIEDSSNADLRHDRNFLR 192
>ref|NP_240949.1| (NC_002570) cell-cycle protein [Bacillus halodurans]
dbj|BAB03802.1| (AP001507) cell-cycle protein [Bacillus halodurans]
Length = 462
Score = 46.2 bits (108), Expect = 5e-04
Identities = 43/187 (22%), Positives = 72/187 (37%), Gaps = 18/187 (9%)
Query: 14 GKNLLGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYI 73
G ++ SGG DS L L I ++ + Q + Q A + H+ C
Sbjct: 19 GLVIVAVSGGPDSMALLHFLFSHREQLGITVMAAHGNHQ---LRQEADEEETFVHQFCLS 75
Query: 74 H-------------HAPKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWF 120
H ++ AR++RY + E K+H + HH +D++E
Sbjct: 76 HGILFTSARLPVKERMEMSGEGVQVTARELRYKWLEAEAKKHGAAFIATGHHGDDQIETI 135
Query: 121 LMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDLKF--FEDDSNSSLK 178
LM+ +G + + IVRP L K ++ K++ D SN++
Sbjct: 136 LMKQVRGTFPLSRGGIPVRREVGDVLIVRPFLGITKGQIEHYCKEVNIEPKRDPSNNASS 195
Query: 179 FKRNCFR 185
+ RN FR
Sbjct: 196 YTRNRFR 202
>gb|AAK92521.1|AF401042_1 (AF401042) LaaH [Lactobacillus sakei]
Length = 348
Score = 45.4 bits (106), Expect = 0.001
Identities = 29/106 (27%), Positives = 50/106 (46%), Gaps = 2/106 (1%)
Query: 106 HLILAHHLNDRLEWFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLK--TLA 163
+L+ AHH +D+LE +M+ + L+ + Q+ ++RPLL K L+ LA
Sbjct: 8 YLVTAHHGDDQLETLMMKFIRSGELHEMRGIQSQRPFADGTLIRPLLPFAKQDLRDYALA 67
Query: 164 KDLKFFEDDSNSSLKFKRNCFRKNYANSLMQDYSKGIIQSFKFLDQ 209
++ FED +N RN R L Q+ + + + +F Q
Sbjct: 68 NNITSFEDQTNYETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQ 113
>ref|NP_218813.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83388|Y373_TREPA Hypothetical protein TP0373
pir||D71333 conserved hypothetical protein TP0373 - syphilis spirochete
gb|AAC65358.1| (AE001216) conserved hypothetical protein [Treponema pallidum]
Length = 477
Score = 44.7 bits (104), Expect = 0.002
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 73 IHHAPKI-AHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGAGLN 131
+H KI + AR +RY F+ + + ++ AH +D+ E LM+L +GA +
Sbjct: 103 VHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTRDDQYETLLMRLFQGAAAS 162
Query: 132 TLLSFQAYEKRESYAIVRPLLYTPKDTLKTL--AKDLKFFEDDSNSSLKFKRNCFRKNY- 188
L +A R VRPLL + ++ + +++ ED SN+ K+ RN R
Sbjct: 163 ALQGIRAARGR----YVRPLLKVSRTCVEDFLQTRGVRWREDASNTCRKYVRNRIRHELI 218
Query: 189 --ANSLMQDYSKGIIQSFKFLDQE 210
++++ + G+ ++F + E
Sbjct: 219 PALDAVLAGWRSGLDKTFAGISAE 242
>ref|NP_601894.1| (NC_003450) COG0037:Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control [Corynebacterium
glutamicum]
Length = 314
Score = 43.9 bits (102), Expect = 0.003
Identities = 48/183 (26%), Positives = 77/183 (41%), Gaps = 18/183 (9%)
Query: 18 LGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHHAP 77
+G SGG DS L ++ E +D+N Q E+ +A +A+ H I +
Sbjct: 34 IGLSGGPDSLALVAAVLAEKSQVTAICIDHNLQTGSAEVTHNAAAMAR-HMGAQAIVKSI 92
Query: 78 KIA--HNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG--AGLNTL 133
++A E AR+ RY F L E + +AH ++D+ E +L+ +G AG+
Sbjct: 93 EVAPGEGMEAAAREARYAAFAQLTDE-----IWVAHTMDDQAETYLLGGLRGNPAGMKDA 147
Query: 134 LSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFRKNYANS 191
+R +I+RPLL + + LK + D N F+R R
Sbjct: 148 ------SRRPELSIIRPLLGARRAHTHGACVELGLKPWHDPQNFDDAFRRVAIRNQVIPL 201
Query: 192 LMQ 194
L Q
Sbjct: 202 LAQ 204
>dbj|BAC00092.1| (AP005282) Predicted ATPase of the PP-loop superfamily implicated
in cell cycle control [Corynebacterium glutamicum ATCC
13032]
Length = 297
Score = 43.9 bits (102), Expect = 0.003
Identities = 48/183 (26%), Positives = 77/183 (41%), Gaps = 18/183 (9%)
Query: 18 LGFSGGLDSTCLFFLLVGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIHHAP 77
+G SGG DS L ++ E +D+N Q E+ +A +A+ H I +
Sbjct: 17 IGLSGGPDSLALVAAVLAEKSQVTAICIDHNLQTGSAEVTHNAAAMAR-HMGAQAIVKSI 75
Query: 78 KIA--HNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKG--AGLNTL 133
++A E AR+ RY F L E + +AH ++D+ E +L+ +G AG+
Sbjct: 76 EVAPGEGMEAAAREARYAAFAQLTDE-----IWVAHTMDDQAETYLLGGLRGNPAGMKDA 130
Query: 134 LSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD--LKFFEDDSNSSLKFKRNCFRKNYANS 191
+R +I+RPLL + + LK + D N F+R R
Sbjct: 131 ------SRRPELSIIRPLLGARRAHTHGACVELGLKPWHDPQNFDDAFRRVAIRNQVIPL 184
Query: 192 LMQ 194
L Q
Sbjct: 185 LAQ 187
>ref|NP_281329.1| (NC_002163) hypothetical protein Cj0118 [Campylobacter jejuni]
pir||F81428 hypothetical protein Cj0118 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72602.1| (AL139074) hypothetical protein Cj0118 [Campylobacter jejuni]
Length = 251
Score = 43.1 bits (100), Expect = 0.004
Identities = 40/162 (24%), Positives = 61/162 (36%), Gaps = 14/162 (8%)
Query: 11 LKEGKN-LLGFSGGLDSTCLFFLL------VGENIVFDIALVDYNTQKQRLEIIQHAQKL 63
+K+G LLG SGG DS L LL + + Y + + H ++
Sbjct: 22 IKDGDRVLLGLSGGKDSLALAHLLNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEH 81
Query: 64 AKTHH---KKCYIHHAPKIAHN--FEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLE 118
H Y I N F ++R T E + L +AHHL+D E
Sbjct: 82 GIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAE 141
Query: 119 WFLMQLSKGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLK 160
F M L TL Y+ + ++RPL++ + L+
Sbjct: 142 SFFMNFIHNGALRTLAPI--YQSKRGITVIRPLIFVRERQLR 181
>ref|NP_539259.1| (NC_003317) CELL CYCLE PROTEIN MESJ [Brucella melitensis]
gb|AAL51523.1| (AE009476) CELL CYCLE PROTEIN MESJ [Brucella melitensis]
Length = 429
Score = 42.7 bits (99), Expect = 0.006
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 23/179 (12%)
Query: 21 SGGLDSTCLFFLL------VGENIVFDIALVDYNTQKQRLEIIQHAQKLAKTHHKKCYIH 74
SGG DS L FLL + V VD+ K R E A+ + K +H
Sbjct: 6 SGGSDSLGLLFLLKDYLSTLESPPVLIAVTVDH---KLRAESALEAENVGLLCQKHGIMH 62
Query: 75 HA-----PKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLSKGA- 128
PK AH AR RY ++ ++ H ND++E FLM+ ++
Sbjct: 63 CVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFIVTGHTENDQIETFLMRKARSGH 122
Query: 129 ----GLNTLLSFQAYEKRESYAIVRPLLYTPKDTLK--TLAKDLKFFEDDSNSSLKFKR 181
GL + E S + RPLL + L+ + + + +D SN+++ ++R
Sbjct: 123 CEARGLAAMSPRSLLE--GSVELARPLLTVSRQALRDELTRRGIAWVDDPSNANIDYER 179
>ref|NP_594640.1| (NC_003424) hypothetical protein [Schizosaccharomyces pombe]
sp|Q10441|YDE8_SCHPO Hypothetical protein C12B10.08c in chromosome I
pir||T37575 bacterial cell cycle protein mesj homolog - fission yeast
(Schizosaccharomyces pombe)
emb|CAA94698.1| (Z70721) hypothetical protein [Schizosaccharomyces pombe]
Length = 456
Score = 42.4 bits (98), Expect = 0.008
Identities = 64/262 (24%), Positives = 108/262 (40%), Gaps = 33/262 (12%)
Query: 18 LGFSGGLDSTCLFFLLVGENIVFD------IALVDYNTQKQRLE-IIQHAQKLAKTHHKK 70
+ SGG+DS L + + I+F +VD+ +K E +Q L +
Sbjct: 27 IAVSGGVDSMLLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQTIWNLNRMLIPN 86
Query: 71 CY--IHHAPKIAH---NFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFLMQLS 125
Y I+ H N E AR+ RY H+ +H+ AHH ND+ E M+L
Sbjct: 87 VYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHANDQAETIFMRLL 146
Query: 126 K-----GAGLNTLLSFQAYEKRESYA------IVRPLLYTPKDTLKTLAKD--LKFFEDD 172
+ GL + + +S ++RPLL K+ + AK + + ED
Sbjct: 147 RRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNTAKQHGIAWEEDP 206
Query: 173 SNSSLKF-KRNCFRK--NYANSLMQDYSK--GIIQSFKF-LDQEKERLYPLTIVS--QMH 224
+N+ + RN R+ N +L + +K QS + +D + + + IVS Q
Sbjct: 207 TNADINLTPRNAIRRFLNQHAALTVEATKLATAFQSLQVNIDNKVDEILKDNIVSYHQPS 266
Query: 225 GITFFKYSQNALFMVDKILKQK 246
G +S+N L + K++
Sbjct: 267 GTLSLCFSKNELKKHSNLTKEE 288
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,267,448
Number of Sequences: 1026957
Number of extensions: 8198879
Number of successful extensions: 24661
Number of sequences better than 1.0e-02: 68
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 24566
Number of HSP's gapped (non-prelim): 74
length of query: 336
length of database: 324,149,939
effective HSP length: 121
effective length of query: 215
effective length of database: 199,888,142
effective search space: 42975950530
effective search space used: 42975950530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 97 (42.0 bits)