BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645349|ref|NP_207523.1| hypothetical protein
[Helicobacter pylori 26695]
(355 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207523.1| (NC_000915) hypothetical protein [Helicoba... 706 0.0
ref|NP_223384.1| (NC_000921) putative [Helicobacter pylori ... 660 0.0
ref|NP_281753.1| (NC_002163) putative ATP /GTP binding prot... 617 e-176
gb|AAC47841.2| (AF030694) CG7 [Plasmodium falciparum] 46 7e-04
>ref|NP_207523.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64611 hypothetical protein HP0729 - Helicobacter pylori (strain 26695)
gb|AAD07788.1| (AE000586) H. pylori predicted coding region HP0729 [Helicobacter
pylori 26695]
Length = 355
Score = 706 bits (1821), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MNHLLILYNPYYQQDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNF 60
MNHLLILYNPYYQQDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNF
Sbjct: 1 MNHLLILYNPYYQQDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNF 60
Query: 61 LQLFLTDYANLFAAKVIKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR 120
LQLFLTDYANLFAAKVIKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR
Sbjct: 61 LQLFLTDYANLFAAKVIKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR 120
Query: 121 DQFLANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENF 180
DQFLANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENF
Sbjct: 121 DQFLANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENF 180
Query: 181 MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK 240
MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK
Sbjct: 181 MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK 240
Query: 241 VLLKACKNDPSLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFI 300
VLLKACKNDPSLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFI
Sbjct: 241 VLLKACKNDPSLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFI 300
Query: 301 NYPFSKSISLIQEIRNEAVHQKAPGLNEVEKLRNEILGIEGASLLKGVLTHKETS 355
NYPFSKSISLIQEIRNEAVHQKAPGLNEVEKLRNEILGIEGASLLKGVLTHKETS
Sbjct: 301 NYPFSKSISLIQEIRNEAVHQKAPGLNEVEKLRNEILGIEGASLLKGVLTHKETS 355
>ref|NP_223384.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71901 hypothetical protein jhp0666 - Helicobacter pylori (strain J99)
gb|AAD06250.1| (AE001499) putative [Helicobacter pylori J99]
Length = 355
Score = 660 bits (1704), Expect = 0.0
Identities = 330/355 (92%), Positives = 343/355 (95%)
Query: 1 MNHLLILYNPYYQQDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNF 60
MNHLLILYNPYYQ+DVIQQHLSVLQEKSQVGFGKIRSKLNDQEK DSLEEIYKATNEKNF
Sbjct: 1 MNHLLILYNPYYQKDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHDSLEEIYKATNEKNF 60
Query: 61 LQLFLTDYANLFAAKVIKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR 120
LQLFLTDYANLFAAKVIKVSK+IDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR
Sbjct: 61 LQLFLTDYANLFAAKVIKVSKEIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR 120
Query: 121 DQFLANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENF 180
DQFLAN IAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKS EYLTMQENF
Sbjct: 121 DQFLANSIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSNEYLTMQENF 180
Query: 181 MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK 240
MRFVFGKRLFYLL+PDSINNIIHAELELLQSENDLLNDFTSIIVKY+KTLEYEIY FAK+
Sbjct: 181 MRFVFGKRLFYLLYPDSINNIIHAELELLQSENDLLNDFTSIIVKYTKTLEYEIYTFAKQ 240
Query: 241 VLLKACKNDPSLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFI 300
VLLKAC+ DP+LYDLAY+VQGKS+TLKDFF KKPNLGS+K LL+HEKVQ HLEENL RFI
Sbjct: 241 VLLKACEKDPNLYDLAYKVQGKSFTLKDFFAKKPNLGSIKLLLKHEKVQDHLEENLKRFI 300
Query: 301 NYPFSKSISLIQEIRNEAVHQKAPGLNEVEKLRNEILGIEGASLLKGVLTHKETS 355
NYPF KS+SLIQ IRN+AVHQKAP LNEVEKLRNEILGIEGASLLKGVLTHKETS
Sbjct: 301 NYPFQKSLSLIQNIRNKAVHQKAPSLNEVEKLRNEILGIEGASLLKGVLTHKETS 355
>ref|NP_281753.1| (NC_002163) putative ATP /GTP binding protein [Campylobacter
jejuni]
pir||A81404 probable ATP /GTP binding protein Cj0570 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB75206.1| (AL139075) putative ATP /GTP binding protein [Campylobacter jejuni]
Length = 355
Score = 617 bits (1592), Expect = e-176
Identities = 302/355 (85%), Positives = 333/355 (93%)
Query: 1 MNHLLILYNPYYQQDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNF 60
MNHLLILYNPYYQ+DVI+QHLS+LQEKSQV FGKI+SKLNDQEKQ+SLEEIY++TNE+NF
Sbjct: 1 MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEKQNSLEEIYQSTNEENF 60
Query: 61 LQLFLTDYANLFAAKVIKVSKDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLR 120
LQLFL+DYANLF AKV+K+SK++DESLIPSYYKEKNLEVEDFFIISDLRELVREDFS LR
Sbjct: 61 LQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSRLR 120
Query: 121 DQFLANFIAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENF 180
D+FLANFI PN+HTYAIYGN+Y YPLPVRLKEE SYFLGDEKHYLSVYKSKEYL MQENF
Sbjct: 121 DKFLANFITPNDHTYAIYGNHYTYPLPVRLKEECSYFLGDEKHYLSVYKSKEYLAMQENF 180
Query: 181 MRFVFGKRLFYLLHPDSINNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYLFAKK 240
+RFVFGKR+FYLLH DSI+NIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIY FAKK
Sbjct: 181 IRFVFGKRIFYLLHSDSISNIIHAELELLQSENDLLNDFTSIIVKYSKTLEYEIYAFAKK 240
Query: 241 VLLKACKNDPSLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFI 300
VLLKAC DPSLYDLAY VQGKS+ LKDFFT+KPNLGS+KFLLRHE +Q HL ++L +FI
Sbjct: 241 VLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNLGSIKFLLRHENIQCHLGKSLTQFI 300
Query: 301 NYPFSKSISLIQEIRNEAVHQKAPGLNEVEKLRNEILGIEGASLLKGVLTHKETS 355
NYPFSKS+++IQEIRNEAVH KAP LNEV+KLRNEILGIEG SLLK +LTHKE S
Sbjct: 301 NYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRNEILGIEGVSLLKRILTHKEIS 355
>gb|AAC47841.2| (AF030694) CG7 [Plasmodium falciparum]
Length = 1281
Score = 45.8 bits (107), Expect = 7e-04
Identities = 68/300 (22%), Positives = 137/300 (45%), Gaps = 36/300 (12%)
Query: 21 LSVLQEKSQVGFGKIRSKLNDQEKQDSLEEIYKATNEKNFLQLFLTDYANLFAAKVIKVS 80
+ + +E+ + K KL D+E EEIY EK ++ +L+ K
Sbjct: 904 IKMKEEQINIINNKNMLKLKDKELN---EEIYSL--EKKLKKIKYVYEKSLYTFKERLKK 958
Query: 81 KDIDESLIPSYYKEKNLEVEDFFIISDLRELVREDFSLLRDQ-FLANFIAPNNHTYAIYG 139
+++ES+I ++N E+ D + ++L++E+ LL+++ + N + NH +
Sbjct: 959 NELNESVI-----KENDELRDNY-----KKLIKENRILLKEKDHMKNMLNKYNHKENVII 1008
Query: 140 NNYVYPLPVRLKEERSYFLGDEKHYLSVYKSKEYLTMQENFMRFVFGKRLFYLLH----- 194
+ + ++ +E YF + K+ L + +K+Y +++++ ++ R L H
Sbjct: 1009 SKTYFQ---QINQELKYFKENNKNNLLLLDTKKYNENVQSYIKMIYKNRKKSLQHISNFI 1065
Query: 195 --PDSINNIIHAELELLQSENDL--LNDFTSII---VKYSKTLEYEIYLFAKKVLLKACK 247
++I ++I+ E+ Q N L +ND I+ +K K L + + L +KA K
Sbjct: 1066 IQLENIYDLINNEIVEQQFHNILKSINDIKYILNEEIKEEKNLMHILSLSQSPKHIKA-K 1124
Query: 248 NDP---SLYDLAYEVQGKSYTLKDFFTKKPNLGSVKFLLRHEKVQYHLEENLNRFINYPF 304
ND S +D+ E Q + KD + ++ + +K + H ++ N IN PF
Sbjct: 1125 NDDNYMSSWDMLEEKQNDNLLQKDTYMEQHIYIHNHPEQKQQKEEKHPKQQHNN-INKPF 1183
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 219,661,510
Number of Sequences: 1026957
Number of extensions: 9238298
Number of successful extensions: 26309
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26305
Number of HSP's gapped (non-prelim): 5
length of query: 355
length of database: 324,149,939
effective HSP length: 122
effective length of query: 233
effective length of database: 198,861,185
effective search space: 46334656105
effective search space used: 46334656105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 98 (42.4 bits)