BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645350|ref|NP_207524.1| hypothetical protein
[Helicobacter pylori 26695]
         (101 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207524.1|  (NC_000915) hypothetical protein [Helicoba...   199  5e-51
ref|NP_223385.1|  (NC_000921) putative [Helicobacter pylori ...   149  8e-36

>ref|NP_207524.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64611 hypothetical protein HP0730 - Helicobacter pylori (strain 26695)
 gb|AAD07789.1| (AE000586) H. pylori predicted coding region HP0730 [Helicobacter
           pylori 26695]
          Length = 101

 Score =  199 bits (506), Expect = 5e-51
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MFSKICSSLKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLI 60
           MFSKICSSLKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLI
Sbjct: 1   MFSKICSSLKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLI 60

Query: 61  VGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101
           VGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK
Sbjct: 61  VGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101



>ref|NP_223385.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71902 hypothetical protein jhp0667 - Helicobacter pylori (strain J99)
 gb|AAD06251.1| (AE001499) putative [Helicobacter pylori J99]
          Length = 101

 Score =  149 bits (375), Expect = 8e-36
 Identities = 74/101 (73%), Positives = 84/101 (82%)

Query: 1   MFSKICSSLKLLNALKGFLFKRISSPVQSARIANMVLDIKNALEGENDPSNKAGKTLDLI 60
           MFSKIC+S KL NA KGF+ KRISSP+QS RI  MVL IK+A   + DP N A + LDL+
Sbjct: 1   MFSKICASFKLANAFKGFICKRISSPMQSTRITKMVLGIKDAFNDDKDPLNNACEALDLV 60

Query: 61  VGFKKEYPQDFDELFEILKELIQEYEQNPDEIKQNLKEILK 101
           V FKKE+PQDF+ELFEILK+LIQEYEQNPDEIKQNLKEILK
Sbjct: 61  VKFKKEHPQDFNELFEILKDLIQEYEQNPDEIKQNLKEILK 101



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.137    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,375,350
Number of Sequences: 1026957
Number of extensions: 2209884
Number of successful extensions: 10142
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10137
Number of HSP's gapped (non-prelim): 2
length of query: 101
length of database: 324,149,939
effective HSP length: 77
effective length of query: 24
effective length of database: 245,074,250
effective search space: 5881782000
effective search space used: 5881782000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 90 (39.3 bits)