BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645352|ref|NP_207526.1| hypothetical protein
[Helicobacter pylori 26695]
         (118 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207526.1|  (NC_000915) hypothetical protein [Helicoba...   238  9e-63
pir||D64611  hypothetical protein HP0732 - Helicobacter pylo...   237  2e-62
ref|NP_223387.1|  (NC_000921) putative [Helicobacter pylori ...   144  2e-34
ref|NP_125753.1|  (NC_000868) hypothetical protein [Pyrococc...    40  0.006

>ref|NP_207526.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD07791.1| (AE000586) H. pylori predicted coding region HP0732 [Helicobacter
           pylori 26695]
          Length = 118

 Score =  238 bits (607), Expect = 9e-63
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL 60
           MESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL
Sbjct: 1   MESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL 60

Query: 61  ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118
           ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE
Sbjct: 61  ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118



>pir||D64611 hypothetical protein HP0732 - Helicobacter pylori (strain 26695)
          Length = 119

 Score =  237 bits (604), Expect = 2e-62
 Identities = 117/118 (99%), Positives = 118/118 (99%)

Query: 1   MESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL 60
           +ESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL
Sbjct: 2   LESYGLACSDRRIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRL 61

Query: 61  ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118
           ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE
Sbjct: 62  ESRKKDIWEKIEKLKANLRPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 119



>ref|NP_223387.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71902 hypothetical protein jhp0669 - Helicobacter pylori (strain J99)
 gb|AAD06253.1| (AE001499) putative [Helicobacter pylori J99]
          Length = 371

 Score =  144 bits (363), Expect = 2e-34
 Identities = 76/111 (68%), Positives = 88/111 (78%), Gaps = 5/111 (4%)

Query: 13  IIAG----LVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIW 68
           +IAG    LVG+  SIW FF S Y++SQQRKEVDKNLHQICEKIVQDVKSR+ES K    
Sbjct: 261 LIAGVGLALVGVGKSIWSFFDSDYKKSQQRKEVDKNLHQICEKIVQDVKSRIESYKNGAL 320

Query: 69  EKIEKLKANL-RPVDNYKRMKRQLKEAHERLRYISHSIHLIISKQGACNEE 118
             IE+L A   + VD+Y+RMKRQL+EAHE+L YIS+SIHL ISKQGACNEE
Sbjct: 321 GMIEELNAGFNKLVDHYERMKRQLEEAHEKLGYISNSIHLTISKQGACNEE 371



>ref|NP_125753.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
 pir||A75192 hypothetical protein PAB2305 - Pyrococcus abyssi (strain Orsay)
 emb|CAB48984.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
          Length = 404

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 12  RIIAGLVGIASSIWKFFSSRYQRSQQRKEVDKNLHQICEKIVQDVKSRLESRKKDIWEKI 71
           R +AG + IA+ +  +FS  Y   + +KE++  + +I EK  +  K + E R+K   EK 
Sbjct: 330 RALAGKLAIAARV-DYFSGEYIAEELKKELEARIREIKEKYPKPPKRKREERRKPWKEKK 388

Query: 72  EKLKANLRPVDNYKR 86
           +K K   R  +  KR
Sbjct: 389 KKKKKKKREKEKGKR 403



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,043,917
Number of Sequences: 1026957
Number of extensions: 2449278
Number of successful extensions: 13550
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13546
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 324,149,939
effective HSP length: 94
effective length of query: 24
effective length of database: 227,615,981
effective search space: 5462783544
effective search space used: 5462783544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)