BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645354|ref|NP_207528.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(439 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207528.1| (NC_000915) conserved hypothetical protein... 862 0.0
ref|NP_223389.1| (NC_000921) putative [Helicobacter pylori ... 842 0.0
emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella ... 501 e-141
ref|NP_282594.1| (NC_002163) hypothetical protein Cj1454c [... 444 e-124
ref|NP_348438.1| (NC_003030) Predicted Fe-S oxidoreductase ... 281 1e-74
ref|NP_562591.1| (NC_003366) conserved hypothetical protein... 276 5e-73
ref|NP_622995.1| (NC_003869) 2-methylthioadenine synthetase... 276 5e-73
ref|NP_213577.1| (NC_000918) hypothetical protein [Aquifex ... 270 2e-71
ref|NP_229658.1| (NC_000853) conserved hypothetical protein... 265 8e-70
ref|NP_224460.1| (NC_000922) conserved hypothetical protein... 259 4e-68
ref|NP_445054.1| (NC_002179) conserved hypothetical protein... 259 4e-68
ref|NP_300310.1| (NC_002491) conserved hypothetical protein... 259 4e-68
ref|NP_662284.1| (NC_002932) conserved hypothetical protein... 232 7e-60
ref|NP_485265.1| (NC_003272) hypothetical protein [Nostoc s... 224 2e-57
ref|NP_442485.1| (NC_000911) hypothetical protein [Synechoc... 223 3e-57
gb|AAL03926.1|U30252_14 (U30252) unknown [Synechococcus sp.... 219 5e-56
gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [... 213 5e-54
ref|NP_629877.1| (NC_003888) conserved hypothetical protein... 202 5e-51
ref|NP_232248.1| (NC_002505) conserved hypothetical protein... 192 7e-48
ref|NP_246510.1| (NC_002663) unknown [Pasteurella multocida... 192 9e-48
ref|NP_286601.1| (NC_002655) orf, hypothetical protein [Esc... 189 4e-47
ref|NP_455386.1| (NC_003198) conserved hypothetical protein... 189 6e-47
ref|NP_459829.1| (NC_003197) putative Fe-S oxidoreductases ... 189 7e-47
gb|EAA02284.1| (AAAB01003427) ebiP1722 [Anopheles gambiae s... 187 2e-46
ref|NP_643044.1| (NC_003919) conserved hypothetical protein... 186 6e-46
ref|NP_637912.1| (NC_003902) conserved hypothetical protein... 184 2e-45
ref|NP_249607.1| (NC_002516) conserved hypothetical protein... 181 1e-44
ref|NP_541681.1| (NC_003318) Fe-S OXIDOREDUCTASE [Brucella ... 177 2e-43
gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha] 175 1e-42
ref|NP_519757.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 175 1e-42
dbj|BAB96555.1| (AB085816) putative fructokinase-like prote... 172 5e-42
ref|NP_622614.1| (NC_003869) 2-methylthioadenine synthetase... 172 5e-42
ref|NP_102288.1| (NC_002678) hypothetical protein [Mesorhiz... 172 9e-42
ref|NP_228462.1| (NC_000853) conserved hypothetical protein... 162 1e-38
ref|NP_348462.1| (NC_003030) Predicted Fe-S oxidoreductase,... 161 2e-38
ref|NP_629911.1| (NC_003888) conserved hypothetical protein... 160 2e-38
ref|NP_219191.1| (NC_000919) conserved hypothetical protein... 160 3e-38
ref|NP_604111.1| (NC_003454) Fe-S oxidoreductase [Fusobacte... 159 5e-38
ref|NP_285512.1| (NC_001264) conserved hypothetical protein... 155 1e-36
ref|NP_601156.1| (NC_003450) COG0621:2-methylthioadenine sy... 154 2e-36
dbj|BAB99342.1| (AP005280) 2-methylthioadenine synthetase [... 154 2e-36
ref|NP_622974.1| (NC_003869) 2-methylthioadenine synthetase... 153 3e-36
ref|NP_440473.1| (NC_000911) hypothetical protein [Synechoc... 150 2e-35
ref|NP_207067.1| (NC_000915) conserved hypothetical ATP-bin... 150 4e-35
ref|NP_222975.1| (NC_000921) putative [Helicobacter pylori ... 149 6e-35
ref|NP_283403.1| (NC_003116) hypothetical protein NMA0590 [... 147 2e-34
ref|NP_562009.1| (NC_003366) conserved hypothetical protein... 146 4e-34
ref|NP_282156.1| (NC_002163) hypothetical proteinCj1006c [C... 146 5e-34
ref|NP_222991.1| (NC_000921) putative [Helicobacter pylori ... 146 5e-34
ref|NP_274862.1| (NC_003112) conserved hypothetical protein... 145 9e-34
ref|NP_207083.1| (NC_000915) conserved hypothetical protein... 145 9e-34
gb|AAG43441.1|AF186181_1 (AF186181) slr0082 [Synechococcus ... 144 3e-33
ref|NP_603372.1| (NC_003454) MIAB protein [Fusobacterium nu... 142 6e-33
ref|NP_390421.1| (NC_000964) similar to hypothetical protei... 142 8e-33
ref|NP_485355.1| (NC_003272) hypothetical protein [Nostoc s... 141 1e-32
ref|NP_242217.1| (NC_002570) BH1351~unknown conserved prote... 141 2e-32
ref|NP_213332.1| (NC_000918) hypothetical protein [Aquifex ... 140 2e-32
ref|NP_213198.1| (NC_000918) hypothetical protein [Aquifex ... 140 3e-32
ref|NP_281645.1| (NC_002163) hypothetical protein Cj0458c [... 139 9e-32
ref|NP_389583.1| (NC_000964) similar to hypothetical protei... 139 9e-32
ref|NP_658342.1| (NC_003995) UPF0004, Uncharacterized prote... 138 1e-31
ref|NP_230609.1| (NC_002505) conserved hypothetical protein... 137 3e-31
ref|NP_371816.1| (NC_002758) conserved hypothetical protein... 137 3e-31
ref|NP_646345.1| (NC_003923) conserved hypothetical protein... 136 6e-31
ref|NP_372100.1| (NC_002758) conserved hypothetical protein... 135 7e-31
ref|NP_657738.1| (NC_003995) UPF0004, Uncharacterized prote... 135 1e-30
ref|NP_353388.1| (NC_003062) AGR_C_623p [Agrobacterium tume... 135 1e-30
ref|NP_531062.1| (NC_003304) miaB protein [Agrobacterium tu... 135 1e-30
ref|NP_106183.1| (NC_002678) hypothetical protein [Mesorhiz... 135 1e-30
ref|NP_642776.1| (NC_003919) conserved hypothetical protein... 133 5e-30
ref|NP_562941.1| (NC_003366) conserved hypothetical protein... 133 5e-30
ref|NP_243238.1| (NC_002570) BH2372~unknown conserved prote... 132 6e-30
ref|NP_252669.1| (NC_002516) conserved hypothetical protein... 132 6e-30
ref|NP_217249.1| (NC_000962) hypothetical protein Rv2733c [... 131 2e-29
ref|NP_406146.1| (NC_003143) putative tRNA-thiotransferase ... 131 2e-29
pir||S57900 conserved hypothetical protein 2 (hemL 3' regio... 131 2e-29
ref|NP_070075.1| (NC_000917) conserved hypothetical protein... 130 2e-29
ref|NP_337308.1| (NC_002755) conserved hypothetical protein... 130 2e-29
ref|NP_245938.1| (NC_002663) unknown [Pasteurella multocida... 130 2e-29
sp|Q49573|Y16R_MYCIO Hypothetical 51.3 kDa protein in 16S R... 130 3e-29
ref|NP_660758.1| (NC_004061) hypothetical 53.7 kD protein i... 129 5e-29
ref|NP_298196.1| (NC_002488) conserved hypothetical protein... 129 7e-29
ref|NP_384511.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 129 7e-29
ref|NP_221158.1| (NC_000963) unknown [Rickettsia prowazekii... 129 9e-29
ref|NP_286386.1| (NC_002655) orf, hypothetical protein [Esc... 128 1e-28
ref|NP_308726.1| (NC_002695) hypothetical protein [Escheric... 128 2e-28
ref|NP_455239.1| (NC_003198) MiaB protein (putative tRNA-th... 127 2e-28
ref|NP_301734.1| (NC_002677) conserved hypothetical protein... 127 2e-28
pir||S72937 hypothetical protein B2235_C2_195 - Mycobacteri... 127 2e-28
ref|NP_459662.1| (NC_003197) methylthiolation of isopenteny... 127 2e-28
ref|NP_637682.1| (NC_003902) conserved hypothetical protein... 126 6e-28
ref|NP_228639.1| (NC_000853) conserved hypothetical protein... 124 2e-27
ref|NP_224673.1| (NC_000922) Hypothetical Protein [Chlamydo... 124 2e-27
ref|NP_220797.1| (NC_000963) unknown [Rickettsia prowazekii... 124 2e-27
ref|NP_360883.1| (NC_003103) unknown [Rickettsia conorii] >... 124 2e-27
ref|NP_300532.1| (NC_002491) hypothetical protein [Chlamydo... 124 2e-27
ref|NP_240253.1| (NC_002528) hypothetical protein [Buchnera... 124 3e-27
ref|NP_347917.1| (NC_003030) Fe-S oxidoreductases [Clostrid... 123 4e-27
gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum] 123 4e-27
ref|NP_294874.1| (NC_001263) conserved hypothetical protein... 122 6e-27
ref|NP_438192.1| (NC_000907) conserved hypothetical protein... 122 8e-27
ref|NP_518652.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 122 8e-27
ref|NP_650002.1| (NM_141745) CG6345 gene product [Drosophil... 122 1e-26
ref|NP_360217.1| (NC_003103) unknown [Rickettsia conorii] >... 121 2e-26
ref|NP_105219.1| (NC_002678) hypothetical protein [Mesorhiz... 120 2e-26
ref|NP_540893.1| (NC_003317) MIAB PROTEIN [Brucella meliten... 119 7e-26
ref|NP_195357.1| (NM_119802) putative protein [Arabidopsis ... 118 2e-25
ref|NP_422478.1| (NC_002696) conserved hypothetical protein... 116 6e-25
ref|NP_616094.1| (NC_003552) 2-methylthioadenine synthase [... 115 1e-24
ref|NP_343738.1| (NC_002754) Conserved hypothetical protein... 114 3e-24
ref|NP_376401.1| (NC_003106) 418aa long conserved hypotheti... 114 3e-24
ref|NP_662869.1| (NC_002932) conserved hypothetical protein... 113 5e-24
ref|NP_498290.1| (NM_065889) F25B5.5.p [Caenorhabditis eleg... 112 9e-24
ref|NP_565035.1| (NM_105867) expressed protein [Arabidopsis... 112 1e-23
emb|CAC15883.2| (AL355392) dJ1187J4.4 (CGI-05 protein (LOC5... 112 1e-23
ref|XP_015893.2| (XM_015893) similar to hypothetical protei... 112 1e-23
ref|NP_634206.1| (NC_003901) hypothetical protein [Methanos... 111 1e-23
ref|NP_275963.1| (NC_000916) conserved protein [Methanother... 111 1e-23
dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sa... 111 1e-23
ref|NP_533359.1| (NC_003304) conserved hypothetical protein... 110 3e-23
ref|NP_355629.1| (NC_003062) AGR_C_4885p [Agrobacterium tum... 110 3e-23
gb|EAA00300.1| (AAAB01008986) agCP9825 [Anopheles gambiae s... 110 4e-23
ref|NP_060244.1| (NM_017774) hypothetical protein FLJ20342 ... 110 4e-23
ref|NP_387344.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 110 4e-23
ref|XP_165724.1| (XM_165724) hypothetical protein XP_165724... 108 1e-22
dbj|BAB55120.1| (AK027449) unnamed protein product [Homo sa... 107 3e-22
ref|NP_080152.1| (NM_025876) RIKEN cDNA 2310066P17 [Mus mus... 106 5e-22
gb|EAA09381.1| (AAAB01008900) agCP15149 [Anopheles gambiae ... 106 5e-22
ref|XP_110019.1| (XM_110019) RIKEN cDNA 6620401C13 [Mus mus... 105 1e-21
gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding ... 104 2e-21
ref|NP_143704.1| (NC_000961) hypothetical protein [Pyrococc... 104 2e-21
sp|O59545|YI75_PYRHO Hypothetical protein PH1875 104 2e-21
ref|NP_579641.1| (NC_003413) hypothetical protein [Pyrococc... 104 2e-21
ref|NP_218710.1| (NC_000919) conserved hypothetical protein... 103 4e-21
ref|NP_111857.1| (NC_002689) 2-methylthioadenine synthetase... 102 7e-21
ref|NP_539050.1| (NC_003317) Fe-S OXIDOREDUCTASE [Brucella ... 102 1e-20
ref|NP_148004.1| (NC_000854) hypothetical protein [Aeropyru... 102 1e-20
ref|NP_247862.1| (NC_000909) conserved hypothetical protein... 101 2e-20
ref|NP_057166.1| (NM_016082) CGI-05 protein; hypothetical p... 100 6e-20
ref|NP_127405.1| (NC_000868) hypothetical protein [Pyrococc... 98 2e-19
ref|NP_560369.1| (NC_003364) conserved hypothetical protein... 98 2e-19
ref|NP_393736.1| (NC_002578) hypothetical protein [Thermopl... 96 8e-19
gb|AAH01215.1|AAH01215 (BC001215) Similar to CGI-05 protein... 92 1e-17
ref|NP_611207.1| (NM_137363) CG6550 gene product [Drosophil... 91 2e-17
ref|NP_614364.1| (NC_003551) 2-methylthioadenine synthetase... 91 2e-17
dbj|BAB26688.1| (AK010081) data source:SPTR, source key:Q9J... 86 9e-16
pir||T10440 conserved hypothetical protein - Mycoplasma iow... 81 3e-14
ref|NP_057492.1| (NM_016408) hypothetical protein HSPC167; ... 80 5e-14
ref|NP_280583.1| (NC_002607) Vng1861c [Halobacterium sp. NR... 79 8e-14
ref|NP_247860.1| (NC_000909) conserved hypothetical protein... 63 6e-09
ref|NP_276299.1| (NC_000916) phosphonoacetaldehyde methylas... 59 9e-08
pir||T10441 conserved hypothetical protein - Mycoplasma iow... 58 2e-07
ref|NP_633546.1| (NC_003901) Fe-S oxidoreductase [Methanosa... 48 3e-04
ref|NP_614081.1| (NC_003551) Predicted Fe-S oxidoreductase ... 48 3e-04
ref|NP_248630.1| (NC_000909) conserved hypothetical protein... 47 3e-04
ref|NP_248493.1| (NC_000909) conserved hypothetical protein... 46 8e-04
ref|NP_348629.1| (NC_003030) Predicted Fe-S oxidoreductase ... 46 0.001
ref|NP_229401.1| (NC_000853) conserved hypothetical protein... 46 0.001
ref|NP_227997.1| (NC_000853) conserved hypothetical protein... 45 0.002
emb|CAA72027.1| (Y11140) homology to M. leprae B2235_C2_195... 44 0.003
ref|NP_615215.1| (NC_003552) conserved hypothetical protein... 44 0.003
ref|NP_562952.1| (NC_003366) probable coproporphyrinogen II... 44 0.005
>ref|NP_207528.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64611 conserved hypothetical protein HP0734 - Helicobacter pylori
(strain 26695)
gb|AAD07780.1| (AE000586) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 439
Score = 862 bits (2226), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQES 60
MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQES
Sbjct: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQES 60
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ
Sbjct: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
Query: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE
Sbjct: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL 240
NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL
Sbjct: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL 240
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVG 300
IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVG
Sbjct: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVG 300
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL 360
HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL
Sbjct: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL 360
Query: 361 KHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT 420
KHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT
Sbjct: 361 KHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT 420
Query: 421 IAPSEFKDNILLAKVLSPF 439
IAPSEFKDNILLAKVLSPF
Sbjct: 421 IAPSEFKDNILLAKVLSPF 439
>ref|NP_223389.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71902 hypothetical protein jhp0671 - Helicobacter pylori (strain J99)
gb|AAD06255.1| (AE001499) putative [Helicobacter pylori J99]
Length = 439
Score = 842 bits (2174), Expect = 0.0
Identities = 428/439 (97%), Positives = 433/439 (98%)
Query: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQES 60
MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAK ADVILINTCGFIESAKQES
Sbjct: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKKADVILINTCGFIESAKQES 60
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDI+IAKKQNQ
Sbjct: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQNQ 120
Query: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE
Sbjct: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL 240
+LALKGY DMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL
Sbjct: 181 DLALKGYKDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL 240
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVG 300
IGAIE SPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLL+AMKQVKESFIRSTIIVG
Sbjct: 241 IGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVKESFIRSTIIVG 300
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL 360
HPEENESEFEELSAFLDEF+FDRLNIFAFSAEENTHAYSLEKVPKK INARIKALNKIAL
Sbjct: 301 HPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSLEKVPKKIINARIKALNKIAL 360
Query: 361 KHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT 420
KHQNHSFKALLNKPIKALVE+KEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT
Sbjct: 361 KHQNHSFKALLNKPIKALVEHKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYT 420
Query: 421 IAPSEFKDNILLAKVLSPF 439
I PS FKDNILLAKVLSPF
Sbjct: 421 IVPSAFKDNILLAKVLSPF 439
>emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella succinogenes]
Length = 439
Score = 501 bits (1289), Expect = e-141
Identities = 250/431 (58%), Positives = 331/431 (76%), Gaps = 4/431 (0%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
+K+L LISLGC+KNLVDSEVMLG+L +Y +T + ADVI++NTCGFIE+AKQES+ +
Sbjct: 2 SKKLHLISLGCTKNLVDSEVMLGRLKSYEITPLIEKADVIIVNTCGFIEAAKQESLSVLF 61
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV 125
A + +K+GAIL+ASGCLSERY +E+ IPE+DI TGVGDYDKID M+ ++Q S +V
Sbjct: 62 EALERRKKGAILVASGCLSERYHEELLREIPEIDIITGVGDYDKIDQMVRERQGFHSGEV 121
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
FL+ R+ITGSSVHAYVK+SEGCNQ CSFCAIP FKGKL SR L+S LKEV+NL K
Sbjct: 122 FLASEEQERVITGSSVHAYVKLSEGCNQTCSFCAIPQFKGKLHSRTLESTLKEVKNLIAK 181
Query: 186 GYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIE 245
G+TD +FIAQD+SS+L D+G+K+GLIQLI A+D + +KSARILYLYPS+ + +LI AI+
Sbjct: 182 GFTDFSFIAQDTSSYLRDRGEKEGLIQLIGALDSLEGIKSARILYLYPSTASAKLIQAIQ 241
Query: 246 SSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEEN 305
S + QNYFDMP+QHI++SMLK+M+R ++Q H +LL+ M+QV SF+R+T+I+GHP E+
Sbjct: 242 KSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLERMRQVPHSFVRTTLILGHPGES 301
Query: 306 ESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIALKHQN 364
E EFEEL FL+EF+FDR+N+FA+S EE T A+ +E K+ K+ INAR+K L+KI K
Sbjct: 302 EEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGKLDKRVINARLKRLDKIIQKQHR 361
Query: 365 HSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYTIA 422
K ++ + I ++E + E E+FY ARD RWAPE+DGEILIN++ L P PGHY
Sbjct: 362 ALLKEMVGQEIPVILEGGSSEHEFFYSARDARWAPEIDGEILINETLLPQP-APGHYWAK 420
Query: 423 PSEFKDNILLA 433
++ LLA
Sbjct: 421 ITQVAGKQLLA 431
>ref|NP_282594.1| (NC_002163) hypothetical protein Cj1454c [Campylobacter jejuni]
pir||E81291 hypothetical protein Cj1454c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73877.1| (AL139078) hypothetical protein Cj1454c [Campylobacter jejuni]
Length = 439
Score = 444 bits (1143), Expect = e-124
Identities = 224/433 (51%), Positives = 316/433 (72%), Gaps = 6/433 (1%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNA 67
+L L+SLGC+KNLVDSE+MLG L Y L ++ ADV+++NTCGFI+SAK+ESI IL+
Sbjct: 3 KLYLMSLGCNKNLVDSEIMLGHLSAYELCDEPSKADVLIVNTCGFIDSAKKESINAILDL 62
Query: 68 AKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL 127
+ +K+ ++L+ +GCL +RY++E+ + +PEVD+FTGVGDY++ID MI KK N FS +L
Sbjct: 63 HEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKTNLFSNSTYL 122
Query: 128 SEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGY 187
+ RIITGS+ HA++KI+EGCNQKCSFCAIPSFKGKL+SRE+ SI+ E+++L +GY
Sbjct: 123 QSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKGKLKSREISSIIAELKDLVARGY 182
Query: 188 TDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESS 247
D +FIAQD+SS+L+DKG+KDGLI+LI ++K + +++ARILYLYP+S + LI I +S
Sbjct: 183 KDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGIRAARILYLYPTSASEALIKRIIAS 242
Query: 248 PIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENES 307
IF NYFDMP+QHISD+MLK M+R ++ ++L+ MK SF+R+ IVGHP E+E+
Sbjct: 243 EIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSAPNSFLRTGFIVGHPGESEA 302
Query: 308 EFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNHSF 367
+FEEL F+ +F FDR+++FA+S EE+T A+ +E+VP K IN R+K + KI + SF
Sbjct: 303 DFEELCEFVKDFGFDRISVFAYSKEEDTAAFDMEQVPFKVINKRLKIIEKIVDEVIEKSF 362
Query: 368 KALLNKPIKALV----ENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYTIAP 423
+ + + K LV ++ EGE+F A+DLRW E+DGEILIN+SE Y
Sbjct: 363 EKEVGQ--KRLVVCTGKSSEGEFFIAAKDLRWDREIDGEILINESECGNLEMGQIYECEI 420
Query: 424 SEFKDNILLAKVL 436
+ D LLAK L
Sbjct: 421 LQNLDKKLLAKAL 433
>ref|NP_348438.1| (NC_003030) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
gb|AAK79778.1|AE007690_5 (AE007690) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
Length = 445
Score = 281 bits (719), Expect = 1e-74
Identities = 162/403 (40%), Positives = 239/403 (59%), Gaps = 11/403 (2%)
Query: 11 LISLGCSKNLVDSEVMLGKLY-NYTLTNDAKSADVILINTCGFIESAKQESIQTIL--NA 67
L+SLGC KN VDSE++LG + +Y + ND + ADVIL+NTCGFIESAKQESI TIL N
Sbjct: 8 LVSLGCDKNRVDSEIILGSMNRDYEIVNDPREADVILVNTCGFIESAKQESINTILEMNK 67
Query: 68 AKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL 127
K+K +LIA+GCL++RY E+KEL+PE+D GV DY +D I N + ++
Sbjct: 68 YKEKYNCKMLIATGCLTQRYGKELKELVPEIDAILGVNDYKSLDDAIEDFFNLGKKDIYC 127
Query: 128 -----SEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
S + RIIT +YV+ISEGCN CS+C IP +GK +SR+ ++I+ EV L
Sbjct: 128 NYSDQSINEGKRIITTGEYSSYVRISEGCNNSCSYCIIPKIRGKYRSRQFENIIDEVREL 187
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
+ G ++ IAQD++ + D + L +L++ + Q ++ RI+Y YP T ELI
Sbjct: 188 SENGTKEVILIAQDTTRYGVDLYGRKRLHELLKEMSLIQGIEWIRIMYCYPEEITEELIE 247
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHL-KLLDAMKQVKESFIRSTIIVGH 301
I S+ NY DMPIQHISD++LK M R + ++ L K+ K+V IR+++IVG
Sbjct: 248 EIASNEKVCNYIDMPIQHISDNILKNMFRKTRKSEILDKVEKIRKKVPNIAIRTSLIVGF 307
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALK 361
P E E +F EL F+ + + L +F +S EE T A + T+ + + + +
Sbjct: 308 PGETEGDFNELCDFVKDANINNLGVFRYSREEGTKAALMPMQIADTVKEKREEDIMLIQQ 367
Query: 362 HQNHSFKA-LLNKPIKALVENKEGEYFYKARDLRWAPEVDGEI 403
+ + A + K K +VE G+Y+Y R+ APE+DG++
Sbjct: 368 QVSKNLNAKKIGKVYKVIVEGFNGDYWY-GRNFEMAPEIDGKV 409
>ref|NP_562591.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81381.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 445
Score = 276 bits (705), Expect = 5e-73
Identities = 158/406 (38%), Positives = 246/406 (59%), Gaps = 12/406 (2%)
Query: 11 LISLGCSKNLVDSEVMLGKLYN-YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK 69
++SLGC KN VDSE+MLG + N Y LTN+ K AD+I++NTCGFIE AKQESI TIL+ AK
Sbjct: 8 MVSLGCDKNRVDSEIMLGMVQNEYELTNNPKEADIIIVNTCGFIEKAKQESINTILDMAK 67
Query: 70 DKKEG--AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL 127
K +LIA+GCL++RY DE+ EL+PE+DI GV DY KI+ I N +E+V
Sbjct: 68 YKTSHNCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMNFINGNNEKVKA 127
Query: 128 SEHYNA------RIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+ + + R+IT AY++I+EGC+ C++C IP +GK +SR L+SI++E +
Sbjct: 128 TNYSDVSINEGLRLITTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRALESIVEEAKK 187
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
LA G ++ IAQD++++ D + L ++R + K + ++ R+LY YP + ELI
Sbjct: 188 LAENGVKELILIAQDTTNYGIDIYGEKKLHLVLRELAKIEGIEWIRVLYCYPEAIYDELI 247
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHL-KLLDAMKQVKESFIRSTIIVG 300
I + NY D+PIQHIS+++LK+M R +++ + K+ D K V +R+++IVG
Sbjct: 248 KEISVNDKVCNYLDLPIQHISNNVLKRMGRKTTKEEIIGKINDLRKNVPNIVLRTSLIVG 307
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIA 359
P E+ +F EL F+ + D++ +F +S EE T A +E ++ ++ AR + + +
Sbjct: 308 FPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEVKKAREEEIMLLQ 367
Query: 360 LKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILI 405
+ K + + L+E GEY Y R AP++DG I +
Sbjct: 368 KEVSEEINKNKVGREYDVLIEKFNGEY-YIGRSYEMAPDIDGCIYV 412
>ref|NP_622995.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24599.1| (AE013097) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 436
Score = 276 bits (705), Expect = 5e-73
Identities = 156/412 (37%), Positives = 246/412 (58%), Gaps = 10/412 (2%)
Query: 11 LISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
+ISLGC KN VDSE ML L Y + ND K ADVI+INTC FIE AK+ESI+ I+
Sbjct: 6 IISLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEYIIQMG 65
Query: 69 KDKKEGA-ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-----DIMIAKKQNQFS 122
+ KK+ LIA+GCLSERY E+ + +PE+D G GD+ +I ++ KK ++
Sbjct: 66 ELKKKRLKYLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKKVLKYG 125
Query: 123 EQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
L++ RI+T +AY+KI+EGC+ CSFC IP +GK +SR++++I++E + L
Sbjct: 126 HPDLLNDEGIPRILTTPPYYAYLKIAEGCSNACSFCIIPKLRGKYKSRKMENIIEEAQEL 185
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
A KG ++ IAQD++ + D +K L QL+R + K + LK R+LY YP S T ELI
Sbjct: 186 ARKGVKELIIIAQDTTKYGIDLYKKLMLPQLLRELSKIEELKWIRLLYAYPDSVTDELIE 245
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHP 302
I+++ Y D+P+QH S+S+LK+M R +++ +++ ++ + +R+T +VG P
Sbjct: 246 EIKNNQKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSIPGMVMRTTFMVGFP 305
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIALK 361
E E EFE+L F+ E +F+R+ +F +S EE T +Y ++ ++ KK R + L +I +
Sbjct: 306 GETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKVKLKRQEELMEIQKQ 365
Query: 362 HQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTP 413
+ + ++ L+E E +Y R APE+DG + + + P
Sbjct: 366 ISYEFNMSKIGTKLEVLIEGFEDGVYY-GRSYMDAPEIDGLVYVRSDKKLFP 416
>ref|NP_213577.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67016|Y849_AQUAE Hypothetical protein AQ_849
pir||E70373 conserved hypothetical protein aq_849 - Aquifex aeolicus
gb|AAC06982.1| (AE000710) hypothetical protein [Aquifex aeolicus]
Length = 432
Score = 270 bits (691), Expect = 2e-71
Identities = 154/404 (38%), Positives = 246/404 (60%), Gaps = 19/404 (4%)
Query: 11 LISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
++SLGC+KNLVDSE++LGKL LT + + ADVI++NTCGFIE AK ESI+TIL A
Sbjct: 5 VVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETILEFA 64
Query: 69 KDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
+ KE +I GCL ERYK+E+++ IPEV + G +++I + K+ + +
Sbjct: 65 ESGKE---VIVMGCLVERYKEELEKEIPEVKAYFGTESWNEILNYLGLKEKKEIK----- 116
Query: 129 EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYT 188
RI++ +AY+KI+EGCN+ CSFCAIP +G+ +SR+++ I+ E + LA +G
Sbjct: 117 -----RILSTPRSYAYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLADQGVK 171
Query: 189 DMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSP 248
++ ++QD++ + D ++ L++L+ ++K + +K R+LYLYP+ +LI + +S
Sbjct: 172 EICVVSQDTTYYGKDLYKEYKLVELLEGLEKVEGIKWIRLLYLYPTEVHEDLIDYVANSE 231
Query: 249 IFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM-KQVKESFIRSTIIVGHPEENES 307
YFD+P+QH+SD +LK MRR L++ + K+++ + R+T IVG P E+E
Sbjct: 232 KVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKKIENAVFRTTFIVGFPTESEE 291
Query: 308 EFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQNHS 366
+F+EL F++E F L +F +S EE THAY L + +P++ R + L I
Sbjct: 292 DFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPREVKEERREELMAIQRGITRKK 351
Query: 367 FKALLNKPIKALVENKEGEYFY--KARDLRWAPEVDGEILINDS 408
+ L K I+ L++ E E+ + K R APEVDG + + S
Sbjct: 352 NEEFLGKEIEVLIDGYEEEFSFVPKGRAYFQAPEVDGVVYVESS 395
>ref|NP_229658.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||G72201 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36924.1|AE001823_6 (AE001823) conserved hypothetical protein [Thermotoga maritima]
Length = 430
Score = 265 bits (677), Expect = 8e-70
Identities = 155/397 (39%), Positives = 231/397 (58%), Gaps = 6/397 (1%)
Query: 14 LGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
LGC KN D EV+ G L + + D K ADV++++TC FIE AK+ESI I + K
Sbjct: 8 LGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAK 67
Query: 72 KE-GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ G L+ GCL +RY +E+K+ IPEVD + GV D ++I I + +Q
Sbjct: 68 DQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIENGTDLVPDQPETVYR 127
Query: 131 YNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDM 190
Y RI +AYVKIS+GC++ C+FC+IPSFKG L+SR ++ I +EVE+L +G ++
Sbjct: 128 YRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEI 187
Query: 191 TFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIF 250
+AQD++S+ D +K L L+R ++ R++YL+P T E+I A+
Sbjct: 188 ILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKV 247
Query: 251 QNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEF 309
YFD+P+QH SD +LK M R S K+L ++++ ++ +R++IIVG P E E +F
Sbjct: 248 VKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDF 307
Query: 310 EELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQNHSFK 368
EEL F++E QFD+L F +S EE T A++L EKV + R + L + + N
Sbjct: 308 EELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLD 367
Query: 369 ALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILI 405
+ K +K LVE KEG+ F R APEVDG + +
Sbjct: 368 RFVGKKLKFLVEGKEGK-FLVGRTWTEAPEVDGVVFV 403
>ref|NP_224460.1| (NC_000922) conserved hypothetical protein [Chlamydophila
pneumoniae CWL029]
pir||G72101 conserved hypothetical protein - Chlamydophila pneumoniae (strain
CWL029)
gb|AAD18404.1| (AE001610) conserved hypothetical protein [Chlamydophila pneumoniae
CWL029]
Length = 500
Score = 259 bits (662), Expect = 4e-68
Identities = 152/420 (36%), Positives = 251/420 (59%), Gaps = 11/420 (2%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQES 60
+ +NK + ISLGCS+NLVDSEVMLG L Y TN+ + AD +++NTC F++SA+ E+
Sbjct: 45 ISKNK-IHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEA 103
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN- 119
+ + KKE A +I +GC++ +KDE+K + + G GD + I I +++
Sbjct: 104 KDYLDHLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESG 163
Query: 120 -QFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ S + ++ R ++ +AY+K++EGC ++C+FC IPS KGKL+S+ LD ILKE
Sbjct: 164 EKISAKSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 223
Query: 179 VENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
L K ++ IAQD + D + L L+ + K+ R+LYLYP
Sbjct: 224 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 283
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
+ +I ++S+P Y D+P+QHI+D +LK+MRR +S+ L L+ ++ +V + +IRS
Sbjct: 284 SDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYIRS 343
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
++IVG P E + EF+EL+ F+ E D L IF +S E NT A L +++P+K +R+K
Sbjct: 344 SVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRLKI 403
Query: 355 LNKIALKHQNHSFKALLNKPIKALVEN--KEGEYFYKARDLRWAPEVDGEILINDSELTT 412
L++I ++ + + L+ + I+A+++N E AR APEVD I++N+++L +
Sbjct: 404 LSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCIIVNEAKLVS 463
>ref|NP_445054.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||A81571 conserved hypothetical protein CP0510 [imported] - Chlamydophila
pneumoniae (strain AR39)
gb|AAF38338.1| (AE002211) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
Length = 503
Score = 259 bits (662), Expect = 4e-68
Identities = 152/420 (36%), Positives = 251/420 (59%), Gaps = 11/420 (2%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQES 60
+ +NK + ISLGCS+NLVDSEVMLG L Y TN+ + AD +++NTC F++SA+ E+
Sbjct: 48 ISKNK-IHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEA 106
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN- 119
+ + KKE A +I +GC++ +KDE+K + + G GD + I I +++
Sbjct: 107 KDYLDHLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESG 166
Query: 120 -QFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ S + ++ R ++ +AY+K++EGC ++C+FC IPS KGKL+S+ LD ILKE
Sbjct: 167 EKISAKSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 226
Query: 179 VENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
L K ++ IAQD + D + L L+ + K+ R+LYLYP
Sbjct: 227 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 286
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
+ +I ++S+P Y D+P+QHI+D +LK+MRR +S+ L L+ ++ +V + +IRS
Sbjct: 287 SDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYIRS 346
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
++IVG P E + EF+EL+ F+ E D L IF +S E NT A L +++P+K +R+K
Sbjct: 347 SVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRLKI 406
Query: 355 LNKIALKHQNHSFKALLNKPIKALVEN--KEGEYFYKARDLRWAPEVDGEILINDSELTT 412
L++I ++ + + L+ + I+A+++N E AR APEVD I++N+++L +
Sbjct: 407 LSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCIIVNEAKLVS 466
>ref|NP_300310.1| (NC_002491) conserved hypothetical protein [Chlamydophila
pneumoniae J138]
dbj|BAA98461.1| (AP002545) conserved hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 500
Score = 259 bits (662), Expect = 4e-68
Identities = 152/420 (36%), Positives = 251/420 (59%), Gaps = 11/420 (2%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQES 60
+ +NK + ISLGCS+NLVDSEVMLG L Y TN+ + AD +++NTC F++SA+ E+
Sbjct: 45 ISKNK-IHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEA 103
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN- 119
+ + KKE A +I +GC++ +KDE+K + + G GD + I I +++
Sbjct: 104 KDYLDHLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESG 163
Query: 120 -QFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ S + ++ R ++ +AY+K++EGC ++C+FC IPS KGKL+S+ LD ILKE
Sbjct: 164 EKISAKSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 223
Query: 179 VENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
L K ++ IAQD + D + L L+ + K+ R+LYLYP
Sbjct: 224 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 283
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
+ +I ++S+P Y D+P+QHI+D +LK+MRR +S+ L L+ ++ +V + +IRS
Sbjct: 284 SDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYIRS 343
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
++IVG P E + EF+EL+ F+ E D L IF +S E NT A L +++P+K +R+K
Sbjct: 344 SVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRLKI 403
Query: 355 LNKIALKHQNHSFKALLNKPIKALVEN--KEGEYFYKARDLRWAPEVDGEILINDSELTT 412
L++I ++ + + L+ + I+A+++N E AR APEVD I++N+++L +
Sbjct: 404 LSQIQKRNVDKHNQKLIGEKIEAVIDNYHPETNLLLTARFYGQAPEVDPCIIVNEAKLVS 463
>ref|NP_662284.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72626.1| (AE012897) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 434
Score = 232 bits (591), Expect = 7e-60
Identities = 146/405 (36%), Positives = 218/405 (53%), Gaps = 24/405 (5%)
Query: 11 LISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
L+SLGCSKN VDSE + + T T++ AD+ILINTCGFI+ AKQESI L A
Sbjct: 13 LLSLGCSKNTVDSERLTAQAVASGLTFTDNVDEADIILINTCGFIKDAKQESIDETLAAI 72
Query: 69 KDKKEGAI--LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
K+EG + + GCL E Y+ E+ E +PE+D G + ++ I K +
Sbjct: 73 GKKEEGVVREVYVMGCLVELYRKELAEEMPEIDGLFGTRELPEVLAAIGAKYRE------ 126
Query: 127 LSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKG 186
E ++ R + +A++KI+EGCN++CSFC+IP +G S+ ++ +L+E L +G
Sbjct: 127 --ELFDRRELLTPPHYAFLKIAEGCNRRCSFCSIPKIRGPYVSQPIEQLLREAALLQQQG 184
Query: 187 YTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIES 246
++ IAQD S + YD K L L + R+LY YP + LE+I +
Sbjct: 185 VKELNLIAQDISVYGYDLYGKSALNDLTLRL-SDMGFNWIRLLYAYPLNFPLEVISTMRE 243
Query: 247 SPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTIIVGHPEEN 305
P NY DMP+QHI+D +LK M+R + +L+D ++Q +R+T+I G+P E
Sbjct: 244 RPNVCNYIDMPLQHINDRILKSMQRGIGRKATEQLIDDIRQKNPDIRLRTTMIAGYPGET 303
Query: 306 ESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNH 365
+EFEEL F+ + +FDRL F + EE+ AY+LE T++ K L
Sbjct: 304 RAEFEELLDFIRQTRFDRLGCFPYRHEEHASAYALE----DTVSDEEKEKRVGELMELQE 359
Query: 366 SFKALLNK-----PIKALVENKEGEYFYKARDLRWAPEVDGEILI 405
A LN+ +K L++ E Y AR APEVD +++I
Sbjct: 360 GISASLNRKLEGQTLKVLIDRIEESVAY-ARTEYDAPEVDNDVII 403
>ref|NP_485265.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73179.1| (AP003585) ORF_ID:alr1222~hypothetical protein [Nostoc sp. PCC
7120]
Length = 440
Score = 224 bits (571), Expect = 2e-57
Identities = 127/413 (30%), Positives = 234/413 (55%), Gaps = 15/413 (3%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQ 62
E + + LGC KN +D+E MLG L Y + + + AD +++NTC FIESA++ES++
Sbjct: 3 EKPTIAISHLGCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVR 62
Query: 63 TILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ-- 120
T++ A+ K+ ++ +GC+++ ++ ++ E +PE G GDY KI +I + +
Sbjct: 63 TLVELAEANKK---IVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQGER 119
Query: 121 ----FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
+E ++++ R T + AY++++EGC+ +C+FC IP +G +SR ++SI+
Sbjct: 120 VTLVSAEPTYIADETTPRYRTTTEGVAYLRVAEGCDYRCAFCIIPHLRGNQRSRTIESIV 179
Query: 177 KEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
E E L +G ++ I+Q ++++ D K L +L+RA+ K + R+ Y YP+
Sbjct: 180 AEAEQLVAQGVQEIILISQITTNYGLDIYGKPKLAELLRALGKIN-VPWIRMHYAYPTGL 238
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
T ++I AI+ +P Y D+P+QH +L+ M R + ++++ +K + + +R+
Sbjct: 239 TPDVIAAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLKIAIPGAVLRT 298
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
T IVG P E E++FE L F+ +FD + +F FSAEE T AY L ++P++ ++ R
Sbjct: 299 TFIVGFPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLPNQLPQEVMDERRDR 358
Query: 355 LNKIALKHQNHSFKALLNKPIKALVENKEGEY-FYKARDLRWAPEVDGEILIN 406
L + + + K ++ L+E + E R R++PEVDG++ ++
Sbjct: 359 LMALQQPISWRKNQQEVGKTVEVLIEQENPESGKLIGRSGRFSPEVDGQVYVD 411
>ref|NP_442485.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|Q55803|Y082_SYNY3 Hypothetical protein slr0082
pir||S76611 hypothetical protein slr0082 - Synechocystis sp. (strain PCC 6803)
dbj|BAA10555.1| (D64004) ORF_ID:slr0082~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 443
Score = 223 bits (569), Expect = 3e-57
Identities = 136/416 (32%), Positives = 229/416 (54%), Gaps = 19/416 (4%)
Query: 14 LGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
LGC KN +DSE MLG L Y + + + AD +++NTC FI+ A+QES++T++ A+ K
Sbjct: 12 LGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVELAEAK 71
Query: 72 KEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-DIMIAKKQNQFSEQV----- 125
K+ ++ SGCL++ +++++ E IPE G GDY I DI+ +Q Q + +
Sbjct: 72 KK---IVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQGQRVKAISPNPS 128
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
F+++ R T + AY++++EGC+ +C+FC IP +GK +SR ++SI+ E E LA +
Sbjct: 129 FIADENLPRYRTTNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQLASQ 188
Query: 186 GYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIE 245
G ++ I+Q ++++ D + L +L++A+ K + RI Y YP+ T ++I AI
Sbjct: 189 GVKELILISQITTNYGLDLYGEPKLAELLQALGKVD-IPWIRIHYAYPTGLTPKVIEAIR 247
Query: 246 SSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHPEE 304
+P Y D+P+QH +L+ M R + ++ +K + ++ +R+T IVG P E
Sbjct: 248 DTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLKTALPDAVLRTTFIVGFPGE 307
Query: 305 NESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQ 363
E F L F+ QFD + +F FS EE T A+ L VP++ + R L +
Sbjct: 308 TEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVPEEVMGDRRDRLMALQQPIS 367
Query: 364 NHSFKALLNKPIKALVENKE---GEYFYKARDLRWAPEVDGEILINDSELTTPLKP 416
A L + + L+E + GE+ R R+APEVDG + + + + P
Sbjct: 368 AQKNAACLGQTLDVLIEQENPSTGEFI--GRSTRFAPEVDGLVYVKGNANLNEIVP 421
>gb|AAL03926.1|U30252_14 (U30252) unknown [Synechococcus sp. PCC 7942]
Length = 452
Score = 219 bits (558), Expect = 5e-56
Identities = 129/403 (32%), Positives = 225/403 (55%), Gaps = 15/403 (3%)
Query: 14 LGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
LGC KN +D+E M+G L Y + + ADV+++NTC FI++A++ES++T++ A+
Sbjct: 12 LGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVRTLVELAESG 71
Query: 72 KEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ-----NQFSEQV- 125
K+ ++ +GCL++ ++D++ +PE G GDY +I ++ + + N S++
Sbjct: 72 KK---IVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERVNAISQEPS 128
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
F+++ R T +S AY++++EGC+ +C+FC IP +GK +SR ++SI+ E + LA +
Sbjct: 129 FIADENLPRYRTTTSAVAYLRVAEGCDYRCAFCIIPHLRGKQRSRSIESIVAEAKQLAAE 188
Query: 186 GYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIE 245
G ++ I+Q ++++ D+ K L +L+R + Q + RI Y YP+ T E+I AI
Sbjct: 189 GVQELVLISQITTNYGLDRYGKPMLAELLRQLG-QVDVPWIRIHYAYPTGLTPEVIAAIR 247
Query: 246 SSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEE 304
+ Y D+P+QH +LK M R + ++++ +K+ + ++ +R+T I G P E
Sbjct: 248 ETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALPDAVLRTTFIAGFPGE 307
Query: 305 NESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQ 363
E F L F+ +FD + +FAFS EE T A L VP AR AL
Sbjct: 308 TEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVKEARRDALMATQQPIA 367
Query: 364 NHSFKALLNKPIKALVENKEGEYFYK-ARDLRWAPEVDGEILI 405
+A + + + L+E + K R R+APEVDG + +
Sbjct: 368 ERRNRAQIGRLVDVLIEQEHPSTGLKIGRSARFAPEVDGVVYV 410
>gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [Zymomonas mobilis]
Length = 443
Score = 213 bits (541), Expect = 5e-54
Identities = 144/417 (34%), Positives = 221/417 (52%), Gaps = 30/417 (7%)
Query: 11 LISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
++SLGC K LVDSE +L KL + Y L++ ADV+L+NTCGFI+SAK+ES+ I A
Sbjct: 13 MVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIGEAM 72
Query: 69 KDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN-QFSEQVFL 127
E +I +GCL + I+E P++ TG Y+++ + + S V L
Sbjct: 73 A---ENGRVIVTGCLGNE-ANRIRERFPDILAITGAQQYEEVVSAVHDAAPIEASPYVDL 128
Query: 128 SEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGY 187
++ ++Y+KISEGCN +CSFC IPS +G L SR D+IL+E E L G
Sbjct: 129 VPEQGLKLTPRH--YSYLKISEGCNHRCSFCIIPSLRGDLVSRRADAILREAEKLVAAGT 186
Query: 188 TDMTFIAQDSSSF----------LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTT 237
++ I QDSS++ D+ K L L R + + A R+ Y+YP
Sbjct: 187 KELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLTDLARGLGELGAW--VRLHYVYPYPHV 244
Query: 238 LELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ----VKESFI 293
LI + I Y D+P QH S S+LK+M+R A+ +K+LD + + V + +
Sbjct: 245 DNLIPLMAEGLILP-YLDIPFQHASPSVLKRMKR---PANEVKILDRLTKWREIVPDIAL 300
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARI 352
RS+ +VG P E E +F+ L +LDE Q DR+ F F A E A + + VP++ N R
Sbjct: 301 RSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFDGAVPEEVKNERY 360
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSE 409
+ L + A + +A + + I +++ +GE R APE+DGE+ + D++
Sbjct: 361 QRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEGGASGRSYADAPEIDGEVHLRDAD 417
>ref|NP_629877.1| (NC_003888) conserved hypothetical protein SC7C7.07 [Streptomyces
coelicolor A3(2)]
pir||T35685 hypothetical protein SC7C7.07 SC7C7.07 - Streptomyces coelicolor
emb|CAA19853.1| (AL031031) conserved hypothetical protein SC7C7.07 [Streptomyces
coelicolor A3(2)]
Length = 493
Score = 202 bits (515), Expect = 5e-51
Identities = 134/452 (29%), Positives = 235/452 (51%), Gaps = 53/452 (11%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQ 62
E++ + L++LGC++N VDSE + G+L + L +DA+ ADV ++NTCGF+E+AK++S+
Sbjct: 3 ESRTVALVTLGCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVD 62
Query: 63 TILNAAKDKKEGAI--LIASGCLSERYKDEIKELIPEVDIFTGVGDY----DKIDIMI-- 114
+L A K G ++A GC++ERY E+ + +PE D G DY D++ ++
Sbjct: 63 ALLEANDLKGHGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNG 122
Query: 115 ------------------AKKQNQFSEQVFLSEHYNA-----------------RIITGS 139
++ + V L H R + GS
Sbjct: 123 GIHAAHTPRDRRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGS 182
Query: 140 SVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSS 199
V A VK++ GC+++CSFCAIPSF+G SR +L E LA +G ++ ++++++S
Sbjct: 183 PV-ASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSENNTS 241
Query: 200 FLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQ 259
+ D G L L+ + + ++ R+ YL P+ LI + S+ YFD+ Q
Sbjct: 242 YGKDLGDIRLLESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQ 301
Query: 260 HISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHPEENESEFEELSAFLDE 318
H + ++L+ MRR L+LLD ++ + E+ +RS IVG P E+E++ EL FL+
Sbjct: 302 HSAPNVLRAMRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNH 361
Query: 319 FQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIALKHQNHSFKALLNKPIKA 377
+ D + +F +S EE T A + +K+ + + R+ ++++A + + + ++
Sbjct: 362 ARLDAIGVFGYSDEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRV 421
Query: 378 LVEN----KEGEYFYKARDLRWAPEVDGEILI 405
LVE+ EG+ + R APE DG++L+
Sbjct: 422 LVESVDPAGEGD-GVRGRAEHQAPETDGQVLL 452
>ref|NP_232248.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||H82054 conserved hypothetical protein VC2620 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95761.1| (AE004328) conserved hypothetical protein [Vibrio cholerae]
Length = 470
Score = 192 bits (488), Expect = 7e-48
Identities = 138/429 (32%), Positives = 213/429 (49%), Gaps = 21/429 (4%)
Query: 12 ISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK 69
+SLGC KNLVDSE +L +L Y + N +DV+++NTCGFI+SA QES+ TI A K
Sbjct: 38 VSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALK 97
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSE 129
E +I +GCL R +DEI+++ P V TG Y + + + + + F S
Sbjct: 98 ---ENGKVIVTGCLGAR-EDEIRQVHPNVLGITGPHAYQNVLEHVHQYAPKPAHNPFTSL 153
Query: 130 HYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTD 189
+ + +AY+KISEGCN +C+FC IPS +G L SR + I+ E E L G +
Sbjct: 154 VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERLKNAGVKE 213
Query: 190 MTFIAQDSSSFLYDKGQKDGLI------QLIRAIDKQQALKS--ARILYLYPSSTTLELI 241
+ I+QD+S++ D G I+A+ ++ R+ Y+YP E+I
Sbjct: 214 LLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMGIWVRLHYVYPYPHVDEII 273
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFIRSTIIVG 300
+ + Y D+P QH S +LK M+R L+ + +++ E IRST IVG
Sbjct: 274 PLMAEGKVLP-YLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPELVIRSTFIVG 332
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIA 359
P E E +F+ L +L E Q DR+ F +S E A +E ++P+ R + +
Sbjct: 333 FPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQDRFERFMLVQ 392
Query: 360 LKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHY 419
+ + + ++ L++ + E R APE+DG + +N T LKPG
Sbjct: 393 QEISAAKLQKRIGSTMQVLIDEVDEEGAI-GRTYADAPEIDGLVYLNGE---TNLKPGEL 448
Query: 420 TIAPSEFKD 428
E D
Sbjct: 449 VNVVIEHAD 457
>ref|NP_246510.1| (NC_002663) unknown [Pasteurella multocida]
sp|Q9CKN9|YF71_PASMU Hypothetical protein PM1571
gb|AAK03655.1| (AE006194) unknown [Pasteurella multocida]
Length = 446
Score = 192 bits (487), Expect = 9e-48
Identities = 134/426 (31%), Positives = 221/426 (51%), Gaps = 27/426 (6%)
Query: 12 ISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK 69
ISLGC KNLVDSE +L +L + Y + ++AD++++NTCGFI+SA QES++ I A +
Sbjct: 11 ISLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFIDSAVQESLEAIGEALE 70
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSE 129
E +I +GCL + +D I+E+ P+V TG Y+ + + K + + +++
Sbjct: 71 ---ENGKVIVTGCLGAK-EDRIREVHPKVLEVTGPHSYEAVMQQVHKYVPKPAYNPYVNL 126
Query: 130 HYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTD 189
+ +AY+KISEGC+ +C+FC IPS +G L SR + +L E + L G +
Sbjct: 127 VPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDEAKRLVEAGVKE 186
Query: 190 MTFIAQDSSSFLYDKGQ--------------KDGLIQLIRAIDKQQALKSARILYLYPSS 235
+ ++QD+S++ D+ + K+ LI L + K R+ Y+YP
Sbjct: 187 ILVVSQDTSAYALDRSKEEQNKTVFWNGMPIKNNLISLCEQLGKLGVW--VRLHYVYPYP 244
Query: 236 TTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFIR 294
+LI + I Y D+P+QH S +LK M+R S L+ + +++ + +R
Sbjct: 245 HVDQLIPLMAEGKILP-YLDIPLQHASPKILKAMKRPGSIERTLERIKKWREICPDLTLR 303
Query: 295 STIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIK 353
ST IVG P E+E +F+ L FL E DR+ F FS E A + ++VP++ AR
Sbjct: 304 STFIVGFPGESEEDFQLLLDFLKEALLDRVGCFKFSPVEGAIATEMPDQVPEEVKEARFH 363
Query: 354 ALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTP 413
++ + + + K LV+ + E AR + APE+DG + I D+
Sbjct: 364 RFMQLQQEISAARLQQKVGKVFTVLVDEVDEEGII-ARSIADAPEIDGVVYI-DNPNRVA 421
Query: 414 LKPGHY 419
+K G +
Sbjct: 422 VKAGQF 427
>ref|NP_286601.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308942.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415356.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P75802|YLIG_ECOLI Hypothetical protein yliG
pir||C64821 conserved hypothetical protein b0835 - Escherichia coli
gb|AAC73922.1| (AE000185) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35530.1| (D90721) Hypothetical 51.7 kd protein in dnaJ-rpsU interegenic
region. [Escherichia coli]
dbj|BAA35538.1| (D90722) Hypothetical 51.7 kd protein in dnaJ-rpsU interegenic
region. [Escherichia coli]
gb|AAG55211.1|AE005265_1 (AE005265) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34338.1| (AP002553) hypothetical protein [Escherichia coli O157:H7]
Length = 441
Score = 189 bits (481), Expect = 4e-47
Identities = 133/430 (30%), Positives = 218/430 (49%), Gaps = 25/430 (5%)
Query: 2 QVKENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQE 59
+V ++ +SLGC KNLVDSE +L +L Y + AD++++NTCGFI+SA QE
Sbjct: 3 KVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQE 62
Query: 60 SIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN 119
S++ I A E +I +GCL + +D+I+E+ P+V TG Y+++ +
Sbjct: 63 SLEAIGEALN---ENGKVIVTGCLGAK-EDQIREVHPKVLEITGPHSYEQVLEHVHHYVP 118
Query: 120 QFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+ FLS + +AY+KISEGCN +C+FC IPS +G L SR + +L E
Sbjct: 119 KPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEA 178
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDG----------LIQLIRAIDKQQALKSARIL 229
+ L G ++ I+QD+S++ D + G ++ L + K R+
Sbjct: 179 KRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIW--TRLH 236
Query: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV- 288
Y+YP ++I + I Y D+P+QH S +LK M+R S L + +++
Sbjct: 237 YVYPYPHVDDVIPLMAEGKILP-YLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREIC 295
Query: 289 KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKT 347
E +RST IVG P E E +F+ L FL E + DR+ F +S E A +L ++VP++
Sbjct: 296 PELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEV 355
Query: 348 INARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILIND 407
R ++ + + + + I +++ + E R + APE+DG + +N
Sbjct: 356 KEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAI-GRSMADAPEIDGAVYLNG 414
Query: 408 SELTTPLKPG 417
T +KPG
Sbjct: 415 E---TNVKPG 421
>ref|NP_455386.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05298.1| (AL627268) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 441
Score = 189 bits (480), Expect = 6e-47
Identities = 134/429 (31%), Positives = 216/429 (50%), Gaps = 25/429 (5%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQES 60
V ++ +SLGC KNLVDSE +L +L Y + AD++++NTCGFI+SA QES
Sbjct: 4 VTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFIDSAVQES 63
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
++ I A E +I +GCL + +D+I+E+ P+V TG Y+++ + +
Sbjct: 64 LEAIGEALN---ENGKVIVTGCLGAK-EDQIREVHPKVLEITGPHSYEQVLQHVHHYVPK 119
Query: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
FLS + +AY+KISEGCN +C+FC IPS +G L SR + +L E +
Sbjct: 120 PKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAK 179
Query: 181 NLALKGYTDMTFIAQDSSSFLYD----------KGQKDGLIQLIRAIDKQQALKSARILY 230
L G ++ I+QD+S++ D + K ++ L + K R+ Y
Sbjct: 180 RLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVW--TRLHY 237
Query: 231 LYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-K 289
+YP ++I + I Y D+P+QH S +LK M+R S L + +++
Sbjct: 238 VYPYPHVDDVIPLMAEGKILP-YLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICP 296
Query: 290 ESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTI 348
E +RST IVG P E E +F+ L FL E + DR+ F +S E A L ++VP++
Sbjct: 297 ELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVK 356
Query: 349 NARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDS 408
R ++ + + + + I +V+ + E R + APE+DG + +N
Sbjct: 357 EERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAI-GRSMADAPEIDGAVYLNGE 415
Query: 409 ELTTPLKPG 417
T +KPG
Sbjct: 416 ---TNVKPG 421
>ref|NP_459829.1| (NC_003197) putative Fe-S oxidoreductases family 1 [Salmonella
typhimurium LT2]
gb|AAL19788.1| (AE008735) putative Fe-S oxidoreductases family 1 [Salmonella
typhimurium LT2]
Length = 441
Score = 189 bits (479), Expect = 7e-47
Identities = 134/429 (31%), Positives = 216/429 (50%), Gaps = 25/429 (5%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQES 60
V ++ +SLGC KNLVDSE +L +L Y + AD++++NTCGFI+SA QES
Sbjct: 4 VTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFIDSAVQES 63
Query: 61 IQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
++ I A E +I +GCL + +D+I+E+ P+V TG Y+++ + +
Sbjct: 64 LEAIGEALN---ENGKVIVTGCLGAK-EDQIREVHPKVLEITGPHSYEQVLQHVHHYVPK 119
Query: 121 FSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
FLS + +AY+KISEGCN +C+FC IPS +G L SR + +L E +
Sbjct: 120 PKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAK 179
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDG----------LIQLIRAIDKQQALKSARILY 230
L G ++ I+QD+S++ D + G ++ L + K R+ Y
Sbjct: 180 RLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGVW--TRLHY 237
Query: 231 LYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-K 289
+YP ++I + I Y D+P+QH S +LK M+R S L + +++
Sbjct: 238 VYPYPHVDDVIPLMAEGKILP-YLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICP 296
Query: 290 ESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTI 348
E +RST IVG P E E +F+ L FL E + DR+ F +S E A L ++VP++
Sbjct: 297 ELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVPEEVK 356
Query: 349 NARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDS 408
R ++ + + + + I +V+ + E R + APE+DG + +N
Sbjct: 357 EERWNRFMQLQQQISAERLQEKVGREILVIVDEVDEEGAI-GRSMADAPEIDGAVYLNGE 415
Query: 409 ELTTPLKPG 417
T +KPG
Sbjct: 416 ---TNVKPG 421
>gb|EAA02284.1| (AAAB01003427) ebiP1722 [Anopheles gambiae str. PEST]
Length = 433
Score = 187 bits (476), Expect = 2e-46
Identities = 133/428 (31%), Positives = 218/428 (50%), Gaps = 25/428 (5%)
Query: 4 KENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESI 61
K+ ++ +SLGC KNLVDSE +L +L Y + A+V+++NTCGF +SA QES+
Sbjct: 5 KQAPKVGFVSLGCPKNLVDSERILTQLRTEGYDVVPSYDDAEVVVVNTCGFFDSAVQESL 64
Query: 62 QTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ I A E +I +GCL + +++I+E+ P+V TG Y+++ + K +
Sbjct: 65 EAIGEALA---ENGKVIVTGCLGAK-ENQIREIHPKVLEITGPHAYEEVLGHVHKYVEKP 120
Query: 122 SEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+ F S + +AY+KISEGCN +C+FC IPS +G L SR + +L E +
Sbjct: 121 THNPFTSLVPAQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLAEAKR 180
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKS--------ARILYLYP 233
L G ++ I+QD+S++ D + G + AL R+ Y+YP
Sbjct: 181 LKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLGMWVRLHYVYP 240
Query: 234 SSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESF 292
++I + + Y D+P+QH S +LK M+R + L+ + +++ E
Sbjct: 241 YPHVDDVIPLMRDGKVLP-YLDIPLQHASPRILKLMKRPGTVERTLERIQKWREICPEIT 299
Query: 293 IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINAR 351
+RST IVG P E E EF+ L F+D+ + DR+ F +S E A L + VP++ R
Sbjct: 300 LRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAKANELPDPVPEEVQEER 359
Query: 352 IKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVDGEILINDSE 409
+ ++ + + K + L++ ++EG A D APE+DG + +N
Sbjct: 360 FQRFMELQQQVSIRKLARKVGKEMLVLIDEVDEEGATGRSAAD---APEIDGLVYLNGE- 415
Query: 410 LTTPLKPG 417
T LKPG
Sbjct: 416 --TGLKPG 421
>ref|NP_643044.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37580.1| (AE011913) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 457
Score = 186 bits (471), Expect = 6e-46
Identities = 138/419 (32%), Positives = 221/419 (51%), Gaps = 22/419 (5%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
N ++ +SLGC K LVDSE +L +L Y + +ADV+++NTCGFI+SA ES+
Sbjct: 5 NPKVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64
Query: 64 ILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-DIMIAKKQNQFS 122
I A + +I +GCL +R ++I+E P+V +G DY + + + A +
Sbjct: 65 IGEAMNANGK---VIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALPPRHD 120
Query: 123 EQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
V L Y ++ +AY+KISEGCN +CSFC IPS +G L SR +D +L+E E L
Sbjct: 121 PFVDLVPDYGIKLTPRH--YAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDEVLREAERL 178
Query: 183 ALKGYTDMTFIAQDSSSFLYD-----KGQKDGLIQL-IRAIDK--QQALKSARILYLYPS 234
G ++ ++QD+S++ D + +D L Q ++A+ + + R+ Y+YP
Sbjct: 179 VRGGVKELLVVSQDTSAYGVDLKYAERPWRDRLYQTRMKALCEGLSELGVWTRLHYVYPY 238
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFI 293
++IG + + Y D+P QH S +LK M+R + L+ + K + E +
Sbjct: 239 PHVDDVIGLMAEGKLLP-YLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITV 297
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARI 352
RST IVG P E ++EFE L FLD+ Q DR+ FA+S + A +L ++VP++ R+
Sbjct: 298 RSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASANALPDQVPEEVKQERL 357
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILI-NDSEL 410
+ ++ + + LV+ E + AR APE+DG + I N EL
Sbjct: 358 ARFMAKQAQISALRLESKIGSVQQCLVDVIEDD-IAVARSRADAPEIDGLVHIQNGGEL 415
>ref|NP_637912.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41836.1| (AE012368) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 457
Score = 184 bits (466), Expect = 2e-45
Identities = 138/419 (32%), Positives = 219/419 (51%), Gaps = 22/419 (5%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
N ++ +SLGC K LVDSE +L +L Y + +ADV+++NTCGFI+SA ES+
Sbjct: 5 NPKVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDA 64
Query: 64 ILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-DIMIAKKQNQFS 122
I A + +I +GCL +R ++I+E P+V +G DY + + + A +
Sbjct: 65 IGEAMNANGK---VIVTGCLGKR-PEQIREAYPQVLAVSGPQDYQSVMEAVHAALPPRHD 120
Query: 123 EQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
V L Y ++ +AY+KISEGCN +CSFC IPS +G L SR +D +L+E E L
Sbjct: 121 PFVDLVPDYGIKLTPRH--YAYLKISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAERL 178
Query: 183 ALKGYTDMTFIAQDSSSFLYD-----KGQKDGLIQL-IRAIDK--QQALKSARILYLYPS 234
G ++ ++QD+S++ D + +D + Q ++A+ + + R+ Y+YP
Sbjct: 179 VRGGVKELLVVSQDTSAYGVDLKYAERPWRDRMYQTRMKALCEGLSELGVWTRLHYVYPY 238
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFI 293
++I + + Y D+P QH S +LK M+R + L+ + K + E +
Sbjct: 239 PHVDDVIPLMAEGKLLP-YLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEITV 297
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARI 352
RST IVG P E ++EFE L FLD+ Q DR+ FA+S E A +L + VP++ R+
Sbjct: 298 RSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGASANALPDPVPEELKQERL 357
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILI-NDSEL 410
+ +A + + LV+ E + AR APE+DG + I N EL
Sbjct: 358 ARFMARQAEISAARLEAKIGSVQQCLVDLIEDD-IAVARSRADAPEIDGLVHIQNGGEL 415
>ref|NP_249607.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||G83532 conserved hypothetical protein PA0916 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04305.1|AE004525_13 (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 440
Score = 181 bits (460), Expect = 1e-44
Identities = 141/424 (33%), Positives = 214/424 (50%), Gaps = 32/424 (7%)
Query: 12 ISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK 69
+SLGC K LVDSE +L +L Y + + ADV+++NTCGFI+SAK ES++ I A
Sbjct: 11 VSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIA 70
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSE 129
E +I +GC+ + I+++ P V TG Y+++ + + +E L +
Sbjct: 71 ---ENGKVIVTGCMGVE-EHAIRDVHPSVLAVTGPQQYEQVVTAVHEVVPPKTEHNPLVD 126
Query: 130 HYNARIITGSSVH-AYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYT 188
+ + + H AY+KISEGCN CSFC IPS +GKL SR + +L E E L G
Sbjct: 127 LVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVK 186
Query: 189 DMTFIAQDSSSFLYDKGQK----DGLIQLIRAIDKQQALKS----ARILYLYPSSTTLEL 240
++ I+QD+S++ D K +G R + +AL S R+ Y+YP ++
Sbjct: 187 ELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYPNVDDV 246
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFIRSTIIV 299
I + + + Y D+P QH S +LK M+R + + L + +++ E IRST IV
Sbjct: 247 IPLMAAGKLLP-YLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPELTIRSTFIV 305
Query: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHA--YSLEKVPKKTINARIKALNK 357
G P E E +F+ L +L E Q DR+ F +S E A LE VP + R +
Sbjct: 306 GFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRWERF-- 363
Query: 358 IALKHQNHSFKALL----NKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTP 413
+ HQ A L K I+ L++ + E R APE+DG + ++ E
Sbjct: 364 --MAHQQAISAARLQLKVGKEIEVLIDEVD-EQGAVGRSWADAPEIDGNVFVDSDE---- 416
Query: 414 LKPG 417
LKPG
Sbjct: 417 LKPG 420
>ref|NP_541681.1| (NC_003318) Fe-S OXIDOREDUCTASE [Brucella melitensis]
gb|AAL53945.1| (AE009705) Fe-S OXIDOREDUCTASE [Brucella melitensis]
Length = 437
Score = 177 bits (450), Expect = 2e-43
Identities = 132/440 (30%), Positives = 215/440 (48%), Gaps = 35/440 (7%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ +SLGC K LVDSE ++ L + Y ++ AD++++NTCGF++SA+ ES++ I
Sbjct: 5 RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV 125
A E +I +GCL D I+E P V TG Y+ + N E
Sbjct: 65 LALN---ENGKVIVTGCLGAE-PDVIRERHPNVLAITGPQAYESV-------MNAVHEVA 113
Query: 126 FLSEHYNARIITGSSV------HAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+ ++ V +AY+KISEGC+ +CSFC IP+ +G L SR ++ +L+E
Sbjct: 114 PPAHDPFVDLVPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSRPINEVLREA 173
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQ----LIRAIDKQQALKS----ARILYL 231
E L G ++ I+QD+S++ D ++ + Q + +D + L R+ Y+
Sbjct: 174 EKLVQAGVKEILVISQDTSAYGLDIKYQEAMWQDRTVRTKFLDLSRELGEMGVWVRMHYV 233
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KE 290
YP E+I + I Y D+P QH S ++LK MRR + Q + + A ++ +
Sbjct: 234 YPYPHVDEVIPLMAEGKILP-YLDIPFQHASPAVLKNMRRPAHQEKTSRRIQAWRETCPD 292
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHA--YSLEKVPKKTI 348
+RST IVG+P E E +F+ L +LDE + +R F + A + A LE+VP++
Sbjct: 293 LAVRSTFIVGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKANDLGLEQVPEEVK 352
Query: 349 NARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDS 408
AR + + K + K + +++ G K R APE+DG + I+
Sbjct: 353 EARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGT-IGKGRTRYDAPEIDGSVHISSR 411
Query: 409 ELTTPLKPGHYTIAPSEFKD 428
PL+ G E D
Sbjct: 412 R---PLRVGDIVTVKIEASD 428
>gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha]
Length = 505
Score = 175 bits (443), Expect = 1e-42
Identities = 132/434 (30%), Positives = 218/434 (49%), Gaps = 38/434 (8%)
Query: 2 QVKENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQE 59
Q + ++ +SLGC K LVDSE ++ +L Y ++ AD++++NTCGFI+ A QE
Sbjct: 56 QKDHSPRVGFVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQE 115
Query: 60 SIQTILNAAKDKKEGAILIASGCLSERYK----DEIKELIPEVDIFTG---VGDY-DKID 111
S+ I A E +I +GCL + D + + P+V TG +G+ +
Sbjct: 116 SLDAIGEALT---ENGKVIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHALGEVMQAVH 172
Query: 112 IMIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171
+ K + F++ V A I +AY+KISEGCN +CSFC IPS +G L SR
Sbjct: 173 THLPKPHDPFTDLVPA-----AGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 227
Query: 172 LDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDG----------LIQLIRAIDKQQ 221
+ ++ E ENL G ++ I+QD+S++ D + G + +L+ A+ +
Sbjct: 228 VAEVMLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELA 287
Query: 222 ALKSA--RILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHL 279
A A R+ Y+YP E+I + + Y D+P+QH +LK+M+R ++ +
Sbjct: 288 AQYGAWVRLHYVYPYPHVDEIIPLMSQGHVLP-YLDVPLQHAHPDVLKRMKRPANAEKTM 346
Query: 280 KLLDAMKQV-KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAY 338
+ A +++ E IRST I G P E E+EF+ L F+ E + DR+ FA+S E A
Sbjct: 347 DRIRAWREICPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCFAYSPVEGATAN 406
Query: 339 SLE-KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRW 395
L +P + R ++A + + + + ++ LV+ N++G + D
Sbjct: 407 DLPGALPDEVREERRARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDGGIGRSSAD--- 463
Query: 396 APEVDGEILINDSE 409
APE+DG + I E
Sbjct: 464 APEIDGLVYIAPPE 477
>ref|NP_519757.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD15338.1| (AL646065) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 453
Score = 175 bits (443), Expect = 1e-42
Identities = 133/433 (30%), Positives = 218/433 (49%), Gaps = 50/433 (11%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQ 62
++ ++ +SLGC K LVDSE ++ +L Y ++ AD++++NTCGFI+ A QES+
Sbjct: 7 QSPKVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLD 66
Query: 63 TILNAAKDKKEGAILIASGCLSERY----KDEIKELIPEVDIFTG---VGDY-DKIDIMI 114
I A E +I +GCL + +D I + P+V TG +G+ + + +
Sbjct: 67 AIGEALA---ENGKVIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHALGEVMEAVHTHL 123
Query: 115 AKKQNQFSEQV------FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQ 168
K + F + V +HY AY+KISEGCN +CSFC IPS +G L
Sbjct: 124 PKPHDPFIDLVPPQGIKLTPKHY-----------AYLKISEGCNHRCSFCIIPSMRGDLV 172
Query: 169 SRELDSILKEVENLALKGYTDMTFIAQDSSSFLYD----------KGQKDGLIQLIRAID 218
SR + ++ E ENL G ++ I+QD+S++ D + K + +L+ A+
Sbjct: 173 SRPVAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPLKTRMTELVGALG 232
Query: 219 KQQALKSA--RILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQA 276
+ A A R+ Y+YP + E++ + + Y D+P+QH +LK+M+R ++
Sbjct: 233 ELAAQYGAWVRLHYVYPYPSVDEVMPLMAEGKVLP-YLDVPLQHAHPEVLKRMKRPANAE 291
Query: 277 HHLKLLDAMKQV-KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENT 335
L + A ++V E IRST I G P E E EF+ L F+ E + DR+ FA+S E
Sbjct: 292 KTLDRIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELDRVGCFAYSPVEGA 351
Query: 336 HAYSLE-KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARD 392
A L +P + R ++A + + + K ++ LV+ N++G + D
Sbjct: 352 TANDLPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDEVNQDGGIGRSSAD 411
Query: 393 LRWAPEVDGEILI 405
APE+DG + I
Sbjct: 412 ---APEIDGLVYI 421
>dbj|BAB96555.1| (AB085816) putative fructokinase-like protein [Pseudomonas putida]
Length = 536
Score = 172 bits (437), Expect = 5e-42
Identities = 136/425 (32%), Positives = 211/425 (49%), Gaps = 44/425 (10%)
Query: 12 ISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK 69
+SLGC K LVDSE ++ +L Y ++ AD++++NTCGFI+ A QES+ I A
Sbjct: 93 VSLGCPKALVDSEQIITQLRAEGYEISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALN 152
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVD--IFTGVGDYDKIDIMIA------KKQNQF 121
E +I +GCL + LI EV + G + ++M A K + F
Sbjct: 153 ---ENGKVIVTGCLGAKKSASGTGLIEEVHPKVLAVTGPHATNEVMNAVHAHLPKPHDPF 209
Query: 122 SEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
++ V A I +AY+KISEGCN +C+FC IPS +G L SR + ++ E EN
Sbjct: 210 TDLVPA-----AGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVADVMLEAEN 264
Query: 182 LALKGYTDMTFIAQDSSSFLYD----------KGQKDGLIQLIRAIDKQQALKSA--RIL 229
L G ++ I+QD+S++ D K K + L+ A+ + A A R+
Sbjct: 265 LFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPVKTRMTDLVGALGELAAQYGAWVRLH 324
Query: 230 YLYPSSTTLELI-----GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDA 284
Y+YP + E+I GA++ + Y D+P QH +LK+M+R ++ L+ + A
Sbjct: 325 YVYPYPSVDEVIPMMAEGALKGHVL--PYLDVPFQHAHPEVLKRMKRPANAEKVLERVQA 382
Query: 285 MKQV-KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-K 342
+++ + IRST I G P E E +FE L F+ DR+ FA+S E A L+
Sbjct: 383 WRKICPDLTIRSTFIAGFPGETEEQFETLLDFIRVADLDRVGCFAYSPVEGASANELDGA 442
Query: 343 VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE--NKEGEYFYKARDLRWAPEVD 400
+P + R ++A + K + K +K LV+ N +G A D APE+D
Sbjct: 443 LPDEVREERRARFMELAEELSAARMKRKIGKTLKVLVDEVNADGGIGRTAAD---APEID 499
Query: 401 GEILI 405
G + I
Sbjct: 500 GVVYI 504
>ref|NP_622614.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24218.1| (AE013061) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 437
Score = 172 bits (437), Expect = 5e-42
Identities = 112/386 (29%), Positives = 204/386 (52%), Gaps = 14/386 (3%)
Query: 8 QLCLISLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ +LGC N ++EVM L + Y + + + ADV +INTC + +S Q I
Sbjct: 3 KVAFYTLGCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQMI- 61
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-----DIMIAKKQNQ 120
++K AI++A GC + DE+ + PEVDI G D DKI D KK+ +
Sbjct: 62 RKTRNKNPDAIVVAVGCYVQVSPDEVFSM-PEVDIVIGTKDKDKIVDLVKDFENEKKKTK 120
Query: 121 FSEQVFLSEHYNARIITGSS--VHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
E + Y ITG + AY+KI +GCNQ C++C IP +G ++SR+ ++I+KE
Sbjct: 121 LIENIMKQRDYEEFGITGYTERTRAYIKIEDGCNQYCTYCIIPYARGPVRSRKPENIIKE 180
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
V+ A GY ++ +S+ D + GL+ +I+ + + + ++ RI + P+ T
Sbjct: 181 VKKYAEHGYKEIVLTGIHIASYGRDL-KNIGLLDVIKMVHEVEGIERIRISSIEPTFLTE 239
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
+++ + + P ++ + +Q D LK+M R + + + ++++ +++ + + I + I
Sbjct: 240 DVVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIPDVAITTDI 299
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALN 356
+VG P E E EFE+ F +E F ++++F +S + T AY+ +VP K R K L
Sbjct: 300 MVGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVKEERSKKLL 359
Query: 357 KIALKHQNHSFKALLNKPIKALVENK 382
+++ + + LN+ ++ L E K
Sbjct: 360 QLSKVCERKFKERFLNRTVEVLFEQK 385
>ref|NP_102288.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48074.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 437
Score = 172 bits (435), Expect = 9e-42
Identities = 131/434 (30%), Positives = 207/434 (47%), Gaps = 23/434 (5%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ +SLGC K LVDSE ++ +L Y + AD++++NTCGF++SA+ ES+ I
Sbjct: 5 RVSFVSLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLNAIG 64
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV 125
+A E +I +GCL D I+E P V TG Y+ + + + S
Sbjct: 65 SALS---ENGRVIVTGCLGAE-PDVIREKHPNVLAITGPQAYESVMAAVHEAAPP-SHDP 119
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
++ + +AY+KISEGCN +C+FC IP+ +G L SR +L+E E LA
Sbjct: 120 YIDLLPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPALRGDLVSRPAADVLREAEKLAKA 179
Query: 186 GYTDMTFIAQDSSSFLYDKGQKDGLI--QLIRA--IDKQQALKS----ARILYLYPSSTT 237
G ++ I+QD+S++ D + + + +RA +D + L R+ Y+YP
Sbjct: 180 GVKELLVISQDTSAYGIDIKYQTSMFGDREVRAKFLDLSEELGKLGIWVRMHYVYPYPHV 239
Query: 238 LELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFIRST 296
++I + I Y D+P QH S +LK MRR + L+ + + V + IRST
Sbjct: 240 ADVIPLMAEGKILP-YLDIPFQHASPQVLKNMRRPAHGEKTLERIRGWRDVCPDLAIRST 298
Query: 297 IIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHA--YSLEKVPKKTINARIKA 354
IVG P E + +FE L +LDE + DR F + + + LE+VP+ AR
Sbjct: 299 FIVGFPGETDEDFEMLLDWLDEAKIDRAGCFKYEPVKGARSNDLGLEQVPQDVKEARWHR 358
Query: 355 LNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPL 414
+ K + K + L++ G K R APE+DG + I P+
Sbjct: 359 FMQRQQKISATQLAKKVGKRLPVLIDEAHGT-SAKGRTKYDAPEIDGSVHIQSRR---PM 414
Query: 415 KPGHYTIAPSEFKD 428
+ G E D
Sbjct: 415 RAGDIVTVKIERAD 428
>ref|NP_228462.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||D72352 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35737.1|AE001738_17 (AE001738) conserved hypothetical protein [Thermotoga maritima]
Length = 443
Score = 162 bits (409), Expect = 1e-38
Identities = 117/395 (29%), Positives = 201/395 (50%), Gaps = 18/395 (4%)
Query: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+ GC N DSE M G L +T + + ADV++INTC +++++ + K
Sbjct: 7 TFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQVLKL 66
Query: 71 KKEGAILIA-SGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK-----KQNQFSEQ 124
KK+ I++ +GC++E+ +++ E D G ++ + K K F +
Sbjct: 67 KKKKKIVVGVAGCVAEKEREKFLE--KGADFVLGTRAVPRVTEAVKKALEGEKVALFEDH 124
Query: 125 VFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLAL 184
+ H RI T S HA+V I GC++ C++C +P +G+ +SR + IL+EV+ LA
Sbjct: 125 LDEYTHELPRIRT-SRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKLAE 183
Query: 185 KGYTDMTFIAQDSSSFLYDKGQKDG--LIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
+GY ++TF+ Q+ + Y K KDG L +L+ K + ++ L YP+ + ELI
Sbjct: 184 QGYREVTFLGQNVDA--YGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIE 241
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGH 301
I +P +P+Q S+ +LK M R ++ +L LL+ ++ +V E I S IIVG
Sbjct: 242 VIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSDIIVGF 301
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHA--YSLEKVPKKTINARIKALNKIA 359
P E E +F E +++ QF+RLN+ +S E T A Y + VP + R++ L +
Sbjct: 302 PTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQFLMNLQ 361
Query: 360 LKHQNHSFKALLNKPIKALVENKEGEYFYKARDLR 394
+ + K ++ +VE + + RD+R
Sbjct: 362 KRINRKLNERYRGKTVRIIVEAQAKNGLFYGRDIR 396
>ref|NP_348462.1| (NC_003030) Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
[Clostridium acetobutylicum]
gb|AAK79802.1|AE007692_10 (AE007692) Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
[Clostridium acetobutylicum]
Length = 441
Score = 161 bits (407), Expect = 2e-38
Identities = 112/396 (28%), Positives = 196/396 (49%), Gaps = 23/396 (5%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
+NK + + GC N DSE + G L Y T++ + AD+I+ NTC E+A+ +
Sbjct: 3 KNKLFFIETWGCQMNAEDSEKLAGMLKEMKYEATDNREDADLIIFNTCCVRENAELKVYG 62
Query: 63 TI--LNAAKDKKEGAILIASGCLSER--YKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
+ L KDKK I+ GC+ ++ + IK+ P VDI G + + K +
Sbjct: 63 NLGTLKKLKDKKPNLIITVCGCMMQQRDMAEHIKKRFPFVDIVMGTHNTQMFPQYLKKVE 122
Query: 119 NQFSEQVFLSEHYNARIITGSSVH------AYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
N+ + V + + I+ G ++ A+V I GCN C++C +P +G+ +SR+
Sbjct: 123 NERTSVVEIWDKEEG-IVEGMPIYRSYDMKAFVTIMYGCNNFCTYCIVPYVRGRERSRKP 181
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
+ I E++ L KGY ++T + Q+ +S+ ++ L+R ++ + L R + +
Sbjct: 182 EDIENEIKELVKKGYKEITLLGQNVNSYGKSLDEEMNFALLLRRLNNIEGLLRIRFMTSH 241
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKES 291
P T ++I AI + +P+Q S ++L KM RN ++ ++ L++ +K +K
Sbjct: 242 PKDLTDDVIAAIADCDKVCEHIHLPVQSGSTTILNKMNRNYTREDYINLVNKIKSGIKNV 301
Query: 292 FIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-----KVPKK 346
I + IIVG P E E +FE+ + + E ++D F +S E T A E +V K
Sbjct: 302 AITTDIIVGFPGETEEDFEDTLSLVKEVEYDSAFTFLYSIREGTPAAKYENQIPDEVKHK 361
Query: 347 TINARIKALNKIALKHQNHSFKALLNKPIKALVENK 382
N ++A+N I+ K K K ++ LVE K
Sbjct: 362 RFNKLLEAVNLISEKKN----KEYEGKIVEILVEGK 393
>ref|NP_629911.1| (NC_003888) conserved hypothetical protein SC4H2.08 [Streptomyces
coelicolor A3(2)]
pir||T35107 hypothetical protein SC4H2.08 SC4H2.08 - Streptomyces coelicolor
emb|CAA18324.1| (AL022268) conserved hypothetical protein SC4H2.08 [Streptomyces
coelicolor A3(2)]
Length = 505
Score = 160 bits (406), Expect = 2e-38
Identities = 108/383 (28%), Positives = 191/383 (49%), Gaps = 13/383 (3%)
Query: 15 GCSKNLVDSEVMLGKLYNYTLTNDAKSAD----VILINTCGFIESAKQESIQTILNAAKD 70
GC N+ DSE + G L + + AD V++ NTC E+A + + + A
Sbjct: 22 GCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNLGHLAPK 81
Query: 71 K--KEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
K + G + GCL+++ +D I + P VD+ G + K+ +++ + + Q QV ++
Sbjct: 82 KASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQVEIA 141
Query: 129 EHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
E A T S+ A+V IS GCN C+FC +P+ +GK + R IL EVE L
Sbjct: 142 ESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEVEALV 201
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGA 243
+G +++T + Q+ +++ D G ++ +L+RA L+ R +P T ++I A
Sbjct: 202 AEGVSEITLLGQNVNAYGSDIGDREAFSKLLRACGNIDGLERVRFTSPHPRDFTDDVIAA 261
Query: 244 IESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHP 302
+ +P MP+Q SD +LK MRR+ Q +L +++ ++ + + I + IIVG P
Sbjct: 262 MAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDIIVGFP 321
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIALK 361
E E +FE+ + E +F + F +S T A +E ++PK + R + L + +
Sbjct: 322 GETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERYERLVALQEE 381
Query: 362 HQNHSFKALLNKPIKALVENKEG 384
K + + ++ +V EG
Sbjct: 382 ISWDENKKQVGRTLELMVAEGEG 404
>ref|NP_219191.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83735|Y754_TREPA Hypothetical protein TP0754
pir||E71284 conserved hypothetical protein TP0754 - syphilis spirochete
gb|AAC65721.1| (AE001247) conserved hypothetical protein [Treponema pallidum]
Length = 456
Score = 160 bits (405), Expect = 3e-38
Identities = 103/397 (25%), Positives = 203/397 (50%), Gaps = 33/397 (8%)
Query: 15 GCSKNLVDS----EVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTI-LNAAK 69
GC N+ +S +++L + +T DA++ DV++INTC +A+ + L ++
Sbjct: 9 GCQMNVAESASVEQLLLAR--GWTKAVDAQTCDVLIINTCSVRITAETRVFGRLGLFSSL 66
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQ----V 125
KK +I GC+++R D+I++ P +D G + + + + + + + +++
Sbjct: 67 KKKRAFFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIEQKLTQKDYRFE 126
Query: 126 FLSEHYNARIITG----------SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSI 175
F+SE Y ++G S +++ I GCN CSFC +P +G+ SR+LD+I
Sbjct: 127 FISERYREHPVSGYRFFASSYSEGSFQSFIPIMNGCNNFCSFCIVPYVRGREISRDLDAI 186
Query: 176 LKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDG--------LIQLIRAIDKQQALKSAR 227
L+EV+ L+ KG ++T + Q+ +S Y ++G L L+R + + +K R
Sbjct: 187 LQEVDVLSEKGVREITLLGQNVNS--YRGRDREGNIVTFPQLLRHLVRRCEVKDQIKWIR 244
Query: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK- 286
+ +P + +LI I +P+QH ++ +LK+MRR+ ++ +L L+ +K
Sbjct: 245 FVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRSYTREQYLSLVGKLKA 304
Query: 287 QVKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPK 345
V + + I++G P E E +FE+ + E +FD ++ ++ E T AY +++P
Sbjct: 305 SVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPD 364
Query: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALVENK 382
T AR++ + + + +A + K + LVE++
Sbjct: 365 ATRIARLQRVIALQMSTTLKKMRARVGKTLPVLVESR 401
>ref|NP_604111.1| (NC_003454) Fe-S oxidoreductase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95410.1| (AE010627) Fe-S oxidoreductase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 435
Score = 159 bits (403), Expect = 5e-38
Identities = 135/424 (31%), Positives = 204/424 (47%), Gaps = 34/424 (8%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQT 63
+K++ +LGC N ++E + +L Y +D+ +IN+C + S +
Sbjct: 4 SKKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCT-VTSIADRKTRN 62
Query: 64 ILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVD----------IFTGVGDYDKIDIM 113
+L AK A +I +GC ++ EI E I +VD I VG + I
Sbjct: 63 MLRRAKKINPKAKVIVTGCYAQTNSREILE-IEDVDFVIDNKNKSNIVNFVGAIEDISFE 121
Query: 114 IAKKQNQFSEQVFLS-EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
K N F E+ + E R +T AYVKI +GCN CS+C IP +GK +SR+
Sbjct: 122 REKNGNIFQEKEYQEYEFATLREMT----RAYVKIQDGCNHFCSYCKIPFARGKSRSRKK 177
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
++ILKE+E L G+ ++ I D S++ D +KD L+ I + + LK RI +Y
Sbjct: 178 ENILKEIEKLVEDGFKEIILIGIDLSAYGEDFEEKDNFESLLEDILRIKDLKRVRIGSVY 237
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHIS-----DSMLKKMRRN-SSQAHHLKLLDAMK 286
P T I +F+N MP HIS D++LK MRRN S LL
Sbjct: 238 PDKITDRFI------ELFKNKKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKSLLKLKS 291
Query: 287 QVKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPK 345
+VK+ + +IVG P+E+E F+ + E +F L+IF +S E T A +++ K+
Sbjct: 292 KVKDMEFTADVIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKIDV 351
Query: 346 KTINARIKALNKIALKHQNHSFKALLNKPIKALV-ENKEGEYF-YKARDLRWAPEVDGEI 403
KT R L+ + + S K L K ++ LV E K GEYF Y LR D +
Sbjct: 352 KTKKQRADRLDSLKQEMIVDSRKKYLEKSLEVLVEEEKNGEYFGYSQNYLRVKFRSDKKD 411
Query: 404 LIND 407
L+N+
Sbjct: 412 LVNN 415
>ref|NP_285512.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75615 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12186.1|AE001862_12 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
Length = 504
Score = 155 bits (391), Expect = 1e-36
Identities = 132/467 (28%), Positives = 215/467 (45%), Gaps = 53/467 (11%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
+K++ ISLGC K LVDSE +L +L Y + + AD +++NTCGFI A +ES+
Sbjct: 20 SKRVGFISLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSA 79
Query: 64 ILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKID------------ 111
I A + +I +GCL ER ++I E P+V TG D +
Sbjct: 80 IGEALDATGK---VIVTGCLGER-PEKIMERHPKVAAITGSEAVDDVMGHVRELLPIDQG 135
Query: 112 -----IMIAKKQNQFSEQVFLSEHYNARIITGSSV------HAYVKISEGCNQKCSFCAI 160
+ +A + + E+ + SV +AYVK++EGCN C+FC I
Sbjct: 136 AFTGLLPVAAPGMRAGVETPQRENTRHGDVFAPSVKLTPRHYAYVKVAEGCNHTCAFCII 195
Query: 161 PSFKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQ--LIRAID 218
P +G SR+ ++L E L G ++ IAQD+S++ D ++ Q +RA
Sbjct: 196 PKLRGLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLRYRESEFQGEQVRAHL 255
Query: 219 KQQALKS------ARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRN 272
A+K R+ Y+YP ++ + + Y D+P+QH S +LK MRR
Sbjct: 256 TDLAVKLGEMGAWVRMHYVYPYPHVDRVVELMAQGKVLP-YLDIPLQHASPKILKLMRRP 314
Query: 273 SSQAHHLKLLDAMKQVK----ESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
+ K LD +++ + E IRST IVG P E E +F+EL FL++ + DR+ F
Sbjct: 315 GAG----KQLDTIRRWREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFP 370
Query: 329 FSAEENTHAYSLE-KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALV------EN 381
+S E A +L VP++ R+ ++A + + + + ++ E+
Sbjct: 371 YSDIEEADANALPGAVPEEVKQERLARFMEVAQRISTEKLSEKVGRVMDVIIDEFNDDED 430
Query: 382 KEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPGHYTIAPSEFKD 428
+ R AP +DG++ + + +K G A E D
Sbjct: 431 DQPGTRLIGRTKGDAPGIDGQVYLYAGDFAGLVKIGDIVRARIEDSD 477
>ref|NP_601156.1| (NC_003450) COG0621:2-methylthioadenine synthetase [Corynebacterium
glutamicum]
Length = 526
Score = 154 bits (390), Expect = 2e-36
Identities = 118/449 (26%), Positives = 214/449 (47%), Gaps = 41/449 (9%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAKD 70
GC N+ DSE + G L Y + + D+++ NTC E+A T+ L + K+
Sbjct: 36 GCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTLGNLRSVKE 95
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
K G + GCL+++ KD + + P VD+ G + + ++ + ++ +V + +
Sbjct: 96 KNPGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAEHNAQAEVEIVDS 155
Query: 131 YNA--RIITGSSVHAY---VKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+++ AY V +S GCN C+FC +PS +GK Q R IL EV+ L +
Sbjct: 156 LEQFPSVLSAKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQ 215
Query: 186 GYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLE 239
G T++T + Q+ +++ + + + +L+RA + + L+ R +P+ T +
Sbjct: 216 GVTEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSD 275
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTII 298
+I A+ +P MP+Q SD +LK+MRR+ L +LD ++ ++ + I + II
Sbjct: 276 VIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSILDEVRAKIPHASITTDII 335
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNK 357
VG P E E +F+ + + +F F +S T A E ++PK+ + R + L
Sbjct: 336 VGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYENQLPKEVVQERYERLMV 395
Query: 358 IALKHQNHSFKALLNKPIKALVENKEG-------EYFYKARD---LRWAPE--VDGEILI 405
+ + + L+ ++ LV+ G +ARD + +APE +DGEI
Sbjct: 396 VQEQVCEEENQKLIGTTVELLVQAGGGRKNDATKRMSGRARDGRLVHFAPEGDIDGEI-- 453
Query: 406 NDSELTTPLKPGHY-TIAPSEFKDNILLA 433
+PG + T+ +E K L+A
Sbjct: 454 ---------RPGDFVTVTVTEAKPFFLIA 473
>dbj|BAB99342.1| (AP005280) 2-methylthioadenine synthetase [Corynebacterium
glutamicum ATCC 13032]
Length = 522
Score = 154 bits (390), Expect = 2e-36
Identities = 118/449 (26%), Positives = 214/449 (47%), Gaps = 41/449 (9%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAKD 70
GC N+ DSE + G L Y + + D+++ NTC E+A T+ L + K+
Sbjct: 32 GCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTLGNLRSVKE 91
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
K G + GCL+++ KD + + P VD+ G + + ++ + ++ +V + +
Sbjct: 92 KNPGMQIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAEHNAQAEVEIVDS 151
Query: 131 YNA--RIITGSSVHAY---VKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+++ AY V +S GCN C+FC +PS +GK Q R IL EV+ L +
Sbjct: 152 LEQFPSVLSAKRESAYAGWVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDILAEVQALVDQ 211
Query: 186 GYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLE 239
G T++T + Q+ +++ + + + +L+RA + + L+ R +P+ T +
Sbjct: 212 GVTEVTLLGQNVNAYGVNFVDPELERDRSAFSKLLRACGEIEGLERVRFTSPHPAEFTSD 271
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTII 298
+I A+ +P MP+Q SD +LK+MRR+ L +LD ++ ++ + I + II
Sbjct: 272 VIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSILDEVRAKIPHASITTDII 331
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNK 357
VG P E E +F+ + + +F F +S T A E ++PK+ + R + L
Sbjct: 332 VGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYENQLPKEVVQERYERLMV 391
Query: 358 IALKHQNHSFKALLNKPIKALVENKEG-------EYFYKARD---LRWAPE--VDGEILI 405
+ + + L+ ++ LV+ G +ARD + +APE +DGEI
Sbjct: 392 VQEQVCEEENQKLIGTTVELLVQAGGGRKNDATKRMSGRARDGRLVHFAPEGDIDGEI-- 449
Query: 406 NDSELTTPLKPGHY-TIAPSEFKDNILLA 433
+PG + T+ +E K L+A
Sbjct: 450 ---------RPGDFVTVTVTEAKPFFLIA 469
>ref|NP_622974.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24578.1| (AE013095) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 471
Score = 153 bits (387), Expect = 3e-36
Identities = 107/384 (27%), Positives = 193/384 (49%), Gaps = 23/384 (5%)
Query: 15 GCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAKD 70
GC N+ DSE + G L Y T D + ADV+L NTC E A+ + + + K+
Sbjct: 39 GCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLGRVSQIKELKN 98
Query: 71 KKEGAILIASGCLSERYK--DEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
+ I+ SGC+ + + I+E P VDI G + K ++ + N + + +
Sbjct: 99 RNPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQALNSRVQVIDVI 158
Query: 129 EHYNARIITG------SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
E+ +I G S++ A+V I GCN C++C +P +G+ +SR + I+ EV+ L
Sbjct: 159 EN-TQNVIEGLPIRRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREKSRRPEDIIAEVKEL 217
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
A KGY ++T + Q+ +S+ D G +L+ ++ + ++ R + +P + ELI
Sbjct: 218 AEKGYKEITLLGQNVNSYGKDLGGDINFAKLLYMLNDIKGIERIRFMTSHPKDISDELIY 277
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGH 301
A+ + +P+Q S+ +LK+M R ++ H+L+++D ++ + + I + IIVG
Sbjct: 278 AMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVRANIPDIAITTDIIVGF 337
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-----EKVPKKTINARIKALN 356
P E E +F + ++ +FD F +S T A S+ ++V K + I+ N
Sbjct: 338 PGETEEDFFQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVDDEVKKDRLIRLIELQN 397
Query: 357 KIALKHQNHSFKALLNKPIKALVE 380
KI+L+ L K ++ L+E
Sbjct: 398 KISLEKS----AELKGKVVEVLIE 417
>ref|NP_440473.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P73127|Y996_SYNY3 Hypothetical protein sll0996
pir||S75239 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA17153.1| (D90904) ORF_ID:sll0996~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 451
Score = 150 bits (380), Expect = 2e-35
Identities = 105/389 (26%), Positives = 200/389 (50%), Gaps = 18/389 (4%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNY--TLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
+I+ GC N DSE M G L N T T+D AD++L NTC ++A+Q+ + A
Sbjct: 10 IITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQA 69
Query: 69 KDKK--EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI----AKKQNQFS 122
K K+ L+ +GC++++ +++ +PE+D+ G +++D ++ A Q +
Sbjct: 70 KRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVAT 129
Query: 123 EQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
E + + E + S+V A+V I GCN++CS+C +P+ +G QSR ++I E+E L
Sbjct: 130 ESLHIMEDIT-KPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVL 188
Query: 183 ALKGYTDMTFIAQDSSSFLYD------KGQK-DGLIQLIRAIDKQQALKSARILYLYPSS 235
A +G+ ++T + Q+ ++ D G+ L L+ + + + R +P
Sbjct: 189 AQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPRY 248
Query: 236 TTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIR 294
T LI A + P +F +P Q + +LK M+R ++ +L++++ +++ + ++ I
Sbjct: 249 FTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDAAIS 308
Query: 295 STIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENT-HAYSLEKVPKKTINARIK 353
+ +IVG P E E++FE ++E FD LN A+S T A+ ++ ++ R++
Sbjct: 309 ADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEVKGDRLQ 368
Query: 354 ALNKIALKHQNHSFKALLNKPIKALVENK 382
LN + + L + + LVE +
Sbjct: 369 RLNHLVSTQAMERSQRYLGRVEEVLVEGE 397
>ref|NP_207067.1| (NC_000915) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
sp|P56131|Y269_HELPY Hypothetical protein HP0269
pir||E64553 conserved hypothetical ATP-binding protein HP0269 - Helicobacter
pylori (strain 26695)
gb|AAD07337.1| (AE000546) conserved hypothetical ATP-binding protein [Helicobacter
pylori 26695]
Length = 437
Score = 150 bits (378), Expect = 4e-35
Identities = 109/382 (28%), Positives = 185/382 (47%), Gaps = 16/382 (4%)
Query: 13 SLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
++GC+ N DSE +L +L +Y TND K+AD+ILINTC E +++ I AK
Sbjct: 7 TMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIGQFAKI 66
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN-----QFSEQV 125
KK A + GC + +I + P V G + KI +I K++ + E
Sbjct: 67 KKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDESA 126
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+ E + + + + + + IS GC++KC++C +P +GK S +D ILKE E LA
Sbjct: 127 YAFEFFEKK----AQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANN 182
Query: 186 GYTDMTFIAQDSSSF---LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
G ++ + Q+ +++ + K L+ + + Q ++ R +P +
Sbjct: 183 GTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMNDGFLE 242
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGH 301
+P MP+Q S ++LK MRR S+ L ++ +K V E I + IIVG
Sbjct: 243 RFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTDIIVGF 302
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKTINARIKALNKIAL 360
P E++ +FE+ L++ +FD L F +S T A + E+VP + ++R++ L
Sbjct: 303 PNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSSRLERLQNRHK 362
Query: 361 KHQNHSFKALLNKPIKALVENK 382
+ K + K LVEN+
Sbjct: 363 EILEEKAKLEVGKTHVVLVENR 384
>ref|NP_222975.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMG6|Y269_HELPJ Hypothetical protein JHP0254
pir||E71953 hypothetical protein jhp0254 - Helicobacter pylori (strain J99)
gb|AAD05846.1| (AE001463) putative [Helicobacter pylori J99]
Length = 437
Score = 149 bits (376), Expect = 6e-35
Identities = 109/382 (28%), Positives = 184/382 (47%), Gaps = 16/382 (4%)
Query: 13 SLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
++GC+ N DSE +L +L +Y T+D K AD+ILINTC E +++ I AK
Sbjct: 7 TMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIGQFAKI 66
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN-----QFSEQV 125
KK A + GC + +I + P V G + KI +I K++ + E
Sbjct: 67 KKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAIDYDESA 126
Query: 126 FLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+ E + + + + + + IS GC++KC++C +P +GK S +D ILKE E LA
Sbjct: 127 YAFEFFEKK----AQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAEKLANN 182
Query: 186 GYTDMTFIAQDSSSF---LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
G ++ + Q+ +++ + K G L+ + + Q ++ R +P +
Sbjct: 183 GTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHMNDAFLE 242
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGH 301
+P MP+Q S ++LK MRR S+ L ++ +K V E I + IIVG
Sbjct: 243 RFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEVGISTDIIVGF 302
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKTINARIKALNKIAL 360
P E++ +FE+ L++ +FD L F +S T A + E+VP + + R++ L
Sbjct: 303 PNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEISSLRLERLQNRHK 362
Query: 361 KHQNHSFKALLNKPIKALVENK 382
+ K + K LVEN+
Sbjct: 363 EILEEKAKLEVGKTHVVLVENR 384
>ref|NP_283403.1| (NC_003116) hypothetical protein NMA0590 [Neisseria meningitidis
Z2491]
pir||C81978 hypothetical protein NMA0590 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83881.1| (AL162753) hypothetical protein NMA0590 [Neisseria meningitidis
Z2491]
Length = 442
Score = 147 bits (372), Expect = 2e-34
Identities = 103/391 (26%), Positives = 185/391 (46%), Gaps = 19/391 (4%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN----YTLTNDAKSADVILINTCGFIESAKQESIQ 62
K++ + + GC N DS+ ML L A AD+IL NTC E A+++
Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61
Query: 63 TI--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
+ + K+KK G I+ +GC++ + + I + P VD+ G ++ MI K+
Sbjct: 62 DLGRVRPLKEKKPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETS 121
Query: 121 FSEQVFLS-------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
QV +S +H + G + A+V I EGC++ CSFC +P +G+ SR L+
Sbjct: 122 GLSQVDISFPEIEKFDHLPPARVEGGA--AFVSIMEGCSKYCSFCVVPYTRGEEFSRPLN 179
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFL--YDKGQKDGLIQLIRAIDKQQALKSARILYL 231
+L E+ NLA +G ++ + Q+ +++ D G+ L+R + + ++ R
Sbjct: 180 DVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T +I P ++ +PIQ SD +L M+R + + ++ ++ ++
Sbjct: 240 HPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
+ S IVG P E E EFE+ + + FD +F +S T A +L + P +
Sbjct: 300 LCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDTPHEEKV 359
Query: 350 ARIKALNKIALKHQNHSFKALLNKPIKALVE 380
R++ALN++ + ++ + LVE
Sbjct: 360 RRLEALNEVIEAETARINQTMIGTVQRCLVE 390
>ref|NP_562009.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80799.1| (AP003189) conserved hypothetical protein [Clostridium perfringens]
Length = 447
Score = 146 bits (369), Expect = 4e-34
Identities = 105/399 (26%), Positives = 198/399 (49%), Gaps = 33/399 (8%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQ 62
+ K C+ + GC N DSE + G L + Y T + + A +I+ NTC E+A+ +
Sbjct: 8 DKKLFCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFG 67
Query: 63 TI--LNAAKDKKEGAILIASGCLSERY--KDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
+ L K K ++ GC+ ++ D++ + P VDI G + K + +
Sbjct: 68 NLGQLKQLKKKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRV- 126
Query: 119 NQFSEQVFLSEHYNAR--IITG------SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170
E V + E N I+ G S V A+V I GCN C++C +P +G+ +SR
Sbjct: 127 --LQEGVQVKEILNKEEGIVEGLPIDRKSDVKAFVTIMYGCNNFCTYCIVPYVRGRERSR 184
Query: 171 ELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGL--IQLIRAIDKQQALKSARI 228
+ + I+KE+E L +GY ++T + Q+ +S Y KG ++ + L+R +++ + L+ R
Sbjct: 185 KSEDIIKEIEELVSQGYKEITLLGQNVNS--YGKGLEEDIDFAGLLRKVNEVKGLERVRF 242
Query: 229 LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-Q 287
+ +P + ++I AI+ +P+Q S +LK+M R+ + ++L L+ +K +
Sbjct: 243 MTSHPKDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIKSE 302
Query: 288 VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEK----- 342
+ + + + II+G P E E +F + + +E +D F +S +T A +E
Sbjct: 303 IPDVTLTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIPDD 362
Query: 343 VPKKTINARIKALN-KIALKHQNHSFKALLNKPIKALVE 380
+ N ++A+N K+ +K++ + K ++ LVE
Sbjct: 363 IKHDRFNRLVEAINKKVVIKNKEYE-----GKVVEVLVE 396
>ref|NP_282156.1| (NC_002163) hypothetical proteinCj1006c [Campylobacter jejuni]
pir||C81376 hypothetical protein Cj1006c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73262.1| (AL139076) hypothetical proteinCj1006c [Campylobacter jejuni]
Length = 416
Score = 146 bits (368), Expect = 5e-34
Identities = 106/387 (27%), Positives = 193/387 (49%), Gaps = 32/387 (8%)
Query: 13 SLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
+ GC N+ D+E++ + +Y + ND A +I++N+C A I++ +N + K
Sbjct: 9 TFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVNSCTVTNGA-DSGIKSYVNTMQKKG 67
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIF--TGVGDYDKIDIMIAKKQN-------QFSE 123
IL G +S+ KEL+ + +F G + DKI+ + K + F +
Sbjct: 68 IKVILTGCGAVSKG-----KELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLNFID 122
Query: 124 QVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+ + E+ N A+VKI EGC+ CS+C IPS +GK +S + ++LK+VE L
Sbjct: 123 KDIVCEYEN-------HTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILG 175
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKDG--LIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
GY+++ + S+ G K+G L +L++ + + +K R+ L P+ +
Sbjct: 176 ANGYSEIVLTGTNIGSY----GLKNGTTLGKLLQKMGQILGIKRIRLGSLEPAQLDESFL 231
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGH 301
++ + + + + + +QH S+ ML+ MRR S + LKL + + K + + IV H
Sbjct: 232 EILDEAWL-ERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS-KGYALGTDFIVAH 289
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTI-NARIKALNKIAL 360
P E+E ++E EF ++ F FS NTH+ +++ V T+ R+ L I
Sbjct: 290 PGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVE 349
Query: 361 KHQNHSFKALLNKPIKALVENKEGEYF 387
K+ N+ F+ ++ LVEN++ +F
Sbjct: 350 KN-NYEFRKKNQVSLEVLVENQKDGFF 375
>ref|NP_222991.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMF0|Y285_HELPJ Hypothetical protein JHP0270
pir||G71952 hypothetical protein jhp0270 - Helicobacter pylori (strain J99)
gb|AAD05851.1| (AE001464) putative [Helicobacter pylori J99]
Length = 418
Score = 146 bits (368), Expect = 5e-34
Identities = 115/401 (28%), Positives = 203/401 (49%), Gaps = 24/401 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILN 66
K++ + GC NL D++VM L +++ T + + AD+I+IN+C
Sbjct: 2 KKVYFKTFGCRTNLFDTQVMGENLKDFSATLEEQEADIIIINSCTVTNGTDSAVRSYARK 61
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYD---KIDIMIAKKQNQFSE 123
A+ KE ++ +GC K + KEL E + GV +D KI+ ++ +K+ F +
Sbjct: 62 MARLDKE---VLFTGC---GVKTQGKELF-EKGLLKGVFGHDNKEKINALLQEKKRFFID 114
Query: 124 QVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
++H + +++ A++KI EGC+ C++C IPS +G+ +S E IL++V
Sbjct: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
L KG ++ + S+ D+G + +LI+ + + LK RI L P+ E +
Sbjct: 175 LCSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQITGLKRIRIGSLEPNQINDEFL 232
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGH 301
+E + + + +QH D ML++M R + +LL+ + K I + IVGH
Sbjct: 233 ELLEED-FLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIAS-KNFAIGTDFIVGH 290
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIAL 360
P E+ES FE+ L+ ++ F +S ++T + + + V + R+ A+ K +
Sbjct: 291 PGESESVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSLEDSKKRLNAI-KDLI 349
Query: 361 KHQNHSFKAL---LNKPIKALVE-NKEGEYFYKARDLRWAP 397
H+N +F+ L LN P+KALVE K+GE +KA D + P
Sbjct: 350 FHKNKAFRQLQLKLNTPLKALVEAQKDGE--FKALDQFFNP 388
>ref|NP_274862.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81034 conserved hypothetical protein NMB1866 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42200.1| (AE002536) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 442
Score = 145 bits (366), Expect = 9e-34
Identities = 99/369 (26%), Positives = 177/369 (47%), Gaps = 19/369 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN----YTLTNDAKSADVILINTCGFIESAKQESIQ 62
K++ + + GC N DS+ ML L A AD+IL NTC E A+++
Sbjct: 2 KKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVFS 61
Query: 63 TI--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
+ + K+K G I+ +GC++ + + I + P VD+ G ++ MI K+
Sbjct: 62 DLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKETS 121
Query: 121 FSEQVFLS-------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
QV +S +H + G + A+V I EGC++ CSFC +P +G+ SR L+
Sbjct: 122 GLSQVDISFPEIEKFDHLPPARVEGGA--AFVSIMEGCSKYCSFCVVPYTRGEEFSRPLN 179
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFL--YDKGQKDGLIQLIRAIDKQQALKSARILYL 231
+L E+ NLA +G ++ + Q+ +++ D G+ L+R + + ++ R
Sbjct: 180 DVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T +I P ++ +PIQ SD +L M+R + + ++ ++ ++
Sbjct: 240 HPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAIRPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
+ S IVG P E E EFE+ + + FD +F +S T A +L + P +
Sbjct: 300 LCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHEEKV 359
Query: 350 ARIKALNKI 358
R++ALN++
Sbjct: 360 RRLEALNEV 368
>ref|NP_207083.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P56130|Y285_HELPY Hypothetical protein HP0285
pir||E64555 conserved hypothetical protein HP0285 - Helicobacter pylori
(strain 26695)
gb|AAD07353.1| (AE000547) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 418
Score = 145 bits (366), Expect = 9e-34
Identities = 115/401 (28%), Positives = 201/401 (49%), Gaps = 24/401 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILN 66
K++ + GC NL D++VM L +++ T + + AD+I+IN+C A
Sbjct: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYD---KIDIMIAKKQNQFSE 123
A+ KE ++ +GC K + KEL E GV +D KI+ ++ +K+ F +
Sbjct: 62 MARLDKE---VLFTGC---GVKTQGKELF-EKGFLKGVFGHDNKEKINALLQEKKRFFID 114
Query: 124 QVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
++H + +++ A++KI EGC+ C++C IPS +G+ +S E IL++V
Sbjct: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
L KG ++ + S+ D+G + +LI+ + + LK RI L P+ E +
Sbjct: 175 LCSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGH 301
+E + + + +QH D ML++M R + +LL+ + K I + IVGH
Sbjct: 233 ELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDFIVGH 290
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENT-HAYSLEKVPKKTINARIKALNKIAL 360
P E+ S FE+ L+ ++ F +S ++T + + V + R+ A+ K +
Sbjct: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI-KDLI 349
Query: 361 KHQNHSFKAL---LNKPIKALVE-NKEGEYFYKARDLRWAP 397
H+N +F+ L LN P+KALVE K+GE +KA D + P
Sbjct: 350 FHKNKAFRQLQLKLNTPLKALVEVQKDGE--FKALDQFFNP 388
>gb|AAG43441.1|AF186181_1 (AF186181) slr0082 [Synechococcus sp. PCC 7002]
Length = 317
Score = 144 bits (362), Expect = 3e-33
Identities = 91/305 (29%), Positives = 159/305 (51%), Gaps = 8/305 (2%)
Query: 123 EQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
E ++++ R T + AY++++EGC+ +C+FC IP +G +SR ++SI+ E + L
Sbjct: 4 EITYIADETVPRYRTTNEAVAYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQL 63
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
A +G ++ I+Q ++++ D K L +L+RA+ + RI Y YP+ T E+I
Sbjct: 64 AEQGVQEIILISQITTNYGKDIYGKPKLAELLRALGGVD-VPWIRIHYAYPTGLTPEVIA 122
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRN-SSQAHHLKLLDAMKQVKESFIRSTIIVGH 301
A+ +P Y D+P+QH +L+ M R + + + D K + ++ +R+T IVG
Sbjct: 123 AMRDTPNVIPYLDLPLQHSHPDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGF 182
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNKIAL 360
P E E F+ L F+ +FD + +F FSAEE T A L ++P+ ++R AL +I
Sbjct: 183 PGETEEHFQHLVDFVKRHEFDHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEIQQ 242
Query: 361 KHQNHSFKALLNKPIKALVENKE---GEYFYKARDLRWAPEVDGEILINDSELTTPLKPG 417
+ + + + L+E + GE R R+AP+VDG + + + P
Sbjct: 243 PIAARRNELCVGQTVDVLIEQENPATGELI--GRSPRFAPDVDGLVYVTGEASLGSIVPV 300
Query: 418 HYTIA 422
T A
Sbjct: 301 QITAA 305
>ref|NP_603372.1| (NC_003454) MIAB protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gb|AAL94671.1| (AE010559) MIAB protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 435
Score = 142 bits (359), Expect = 6e-33
Identities = 108/399 (27%), Positives = 194/399 (48%), Gaps = 29/399 (7%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN---YTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+ +I+ GC N V+ + K++ Y +T + +AD + +NTC E A +
Sbjct: 2 KKASIITYGCQMN-VNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGK 60
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK-KQNQ 120
+ L A K+K+ G I+ +GC ++ +E+ + P +DI G + +I I K + N+
Sbjct: 61 LGELKALKEKR-GTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNE 119
Query: 121 FSEQVF------LSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
+ +V+ L +A GS A + I+ GCN C+FC +P +G+ +S L+
Sbjct: 120 STHEVYTDNEDELPPRLDAEF--GSDQTASISITYGCNNFCTFCIVPYVRGRERSVPLEE 177
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
I+K+VE KG ++ + Q+ +S+ D D +L+ I K + R + +P
Sbjct: 178 IVKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGDNFAKLLDEICKVEGDYIVRFVSPHPR 237
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFI 293
T ++I I + +P+Q S +LKKMRR ++ +L L+D +K ++ +
Sbjct: 238 DFTDDVIEVIAKNKKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVAL 297
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-----EKVPKKTI 348
+ IIVG P E E +F + + + FD +F +S + T A ++ E V K+ +
Sbjct: 298 TADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKERL 357
Query: 349 NARIKALNKIAL----KHQNHSFKALLNKPIKALVENKE 383
++ NK + K++ K L+ P K +NKE
Sbjct: 358 QRLMEVQNKCSFYESSKYKGRIVKVLVEGPSK---KNKE 393
>ref|NP_390421.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P54462|YQEV_BACSU Hypothetical protein yqeV
pir||E69952 conserved hypothetical protein yqeV - Bacillus subtilis
dbj|BAA12468.1| (D84432) YqeV [Bacillus subtilis]
dbj|BAA12080.1| (D83717) YqeV [Bacillus subtilis]
emb|CAB14485.1| (Z99117) similar to hypothetical proteins [Bacillus subtilis]
Length = 451
Score = 142 bits (358), Expect = 8e-33
Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 19/364 (5%)
Query: 13 SLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N ++E + L K Y + ++ADV +INTC + ++S Q I A +
Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIRRAIRQ 67
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+G I + +GC ++ EI IP VDI G D +K+ I + + + +S
Sbjct: 68 NPDGVICV-TGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIDQYREERQPINGVSNI 125
Query: 131 YNARIITGSSVHAY-------VKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
AR+ V A+ +KI EGCN C+FC IP +G L+SR+ + ++K+ + L
Sbjct: 126 MKARVYEELDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQAQQLV 185
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKD-GLIQLIRAID-KQQALKSARILYLYPSSTTLELI 241
GY ++ + Y + KD +L+ +D + + +K RI + S T E+I
Sbjct: 186 DAGYKEIVLTGIHTGG--YGEDMKDYNFAKLLSELDTRVEGVKRIRISSIEASQITDEVI 243
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTIIVG 300
++ S N+ +PIQ S+++LK+MRR + L+ +K+ + S +IVG
Sbjct: 244 EVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDVIVG 303
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIA 359
P E E EF E F+ E +F L++F +S T A +E +V + N R+ L IA
Sbjct: 304 FPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRL--IA 361
Query: 360 LKHQ 363
L Q
Sbjct: 362 LSDQ 365
>ref|NP_485355.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73269.1| (AP003585) ORF_ID:alr1312~hypothetical protein [Nostoc sp. PCC
7120]
Length = 454
Score = 141 bits (356), Expect = 1e-32
Identities = 99/370 (26%), Positives = 186/370 (49%), Gaps = 18/370 (4%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQT 63
N++ + + GC N DSE M G L + + + D +AD+IL NTC ++A+Q+
Sbjct: 5 NRRYHITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSY 64
Query: 64 ILNAAKDKKE--GAILIASGCLSERYKDEIKELIPEVDIFTGVGDY----DKIDIMIAKK 117
+ AK K E L+ +GC++++ + + +PE+D+ G D ++ + A
Sbjct: 65 LGRQAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGN 124
Query: 118 QNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILK 177
Q +E V + E + S+V A+V + GCN++C++C +P+ +G QSR ++
Sbjct: 125 QVVATEAVHIMEDIT-QARRDSTVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRA 183
Query: 178 EVENLALKGYTDMTFIAQDSSSFLYD------KGQK-DGLIQLIRAIDKQQALKSARILY 230
E+E L +GY ++T + Q+ ++ D +G+ L+ + ++ R
Sbjct: 184 EMEELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVPGVERIRFAT 243
Query: 231 LYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VK 289
+P T LI A P +F +P Q + +LK M R +Q + +++D +++ +
Sbjct: 244 SHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRYMP 303
Query: 290 ESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTI 348
++ I + IVG P E E +FE +D+ FD+LN A+S T A E ++ ++
Sbjct: 304 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEEVK 363
Query: 349 NARIKALNKI 358
+ R++ LN +
Sbjct: 364 SDRLQRLNHL 373
>ref|NP_242217.1| (NC_002570) BH1351~unknown conserved protein [Bacillus halodurans]
dbj|BAB05070.1| (AP001511) BH1351~unknown conserved protein [Bacillus halodurans]
Length = 448
Score = 141 bits (355), Expect = 2e-32
Identities = 103/359 (28%), Positives = 178/359 (48%), Gaps = 16/359 (4%)
Query: 13 SLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N ++E + L K Y + + ADV +INTC + ++S Q I A +
Sbjct: 8 TLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIRRAIR- 66
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
K A++ +GC ++ E+ IP VDI G D K+ I + + + +
Sbjct: 67 KNPDAVICVTGCYAQTSPAEVMA-IPGVDIVVGTQDRKKMLEYIEQYKKERQPINGVGNI 125
Query: 131 YNARIITGSSVHAY-------VKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+R+ V A+ +KI EGCN C+FC IP +G ++SR+ ++K+ E L
Sbjct: 126 MKSRVYEELDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIKQAEQLV 185
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKD-GLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
GY ++ + Y + KD L +L+ +++ LK RI + S T E+I
Sbjct: 186 QAGYKEIVLTGIHTGG--YGEDLKDYSLARLLEDLEQVNGLKRIRISSIEASQLTDEVIE 243
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTIIVGH 301
I+ S + +P+Q SD++LK+MRR + A + L+ +++ + S +IVG
Sbjct: 244 VIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVTSDVIVGF 303
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIA 359
P E E+EF+E F+ + +F L++F +S T A +E +V + N R+ L +++
Sbjct: 304 PGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVHRLIQLS 362
>ref|NP_213332.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66772|Y474_AQUAE Hypothetical protein AQ_474
pir||H70342 conserved hypothetical protein aq_474 - Aquifex aeolicus
gb|AAC06733.1| (AE000691) hypothetical protein [Aquifex aeolicus]
Length = 410
Score = 140 bits (354), Expect = 2e-32
Identities = 98/378 (25%), Positives = 193/378 (50%), Gaps = 15/378 (3%)
Query: 13 SLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N D++++ K Y + + ADV +INTC + S Q I A K
Sbjct: 7 TLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIYQA-KR 65
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ AI++A+GC ++ E+ +L EVD+ G ++ ++ + + ++V + E
Sbjct: 66 RNPKAIVVATGCYAQVNPQELAKL-KEVDLVVGNTHKSELLKILEEYLERREKKVVVGEI 124
Query: 131 YNAR-------IITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+ + ++ V ++K+ EGCN+ C+FC IP +GK++S +L+ I+ +V+ LA
Sbjct: 125 FREKEVRNFDTVLYFEGVRPFLKVQEGCNKFCTFCVIPYARGKVRSVDLEKIVHQVKLLA 184
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGA 243
KG+ ++ S + +DKG L L+ + K + ++ R+ ++ EL+
Sbjct: 185 QKGFKEVVLTGTQLSQYGWDKGY--NLYTLLTELIKIEGIELIRLSSMHIKEMDKELLKL 242
Query: 244 IESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKE-SFIRSTIIVGHP 302
I S +F + +Q S+ +L+ M R ++ + ++++ + + + S I + +IVG P
Sbjct: 243 IVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIVENRPISSIGTDVIVGFP 302
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIALK 361
E+E +F+E FL ++IF +S T A L+ K+P++ R++ L ++ K
Sbjct: 303 TESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLPERIKKERVRILKELDQK 362
Query: 362 HQNHSFKALLNKPIKALV 379
+ ++ K ++ALV
Sbjct: 363 KRQEFYEKNKGKELRALV 380
>ref|NP_213198.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66638|Y284_AQUAE Hypothetical protein AQ_284
pir||B70326 conserved hypothetical protein aq_284 - Aquifex aeolicus
gb|AAC06605.1| (AE000682) hypothetical protein [Aquifex aeolicus]
Length = 440
Score = 140 bits (353), Expect = 3e-32
Identities = 104/405 (25%), Positives = 194/405 (47%), Gaps = 14/405 (3%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
+K+ + + GC N DSE + G K Y T++ + AD+I++NTC E Q+ +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+K A++ +GCL++R E+ + P +DI + ++ +I + Q +
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 122 SEQVFLSEH-------YNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
L E + + + AYV I +GC++ C++C +P +GK +SR L S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
IL EV+ L G ++ + Q+ +++ D + +L+ + K ++ R +P
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDFEKPIPFSELLYQVSKIDGVERIRFTTGHPR 241
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFI 293
T ++I A+ P N +P Q S+ +L M R ++ +L+ ++ +K+ VK+ +
Sbjct: 242 DLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKVKDIAM 301
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARI 352
+ +IVG P E E +FE L + +F+++ F FS T A +E ++P R+
Sbjct: 302 STDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDVKTERM 361
Query: 353 KALNKIALKHQNHSFKALLNKPIKALV-ENKEGEYFYKARDLRWA 396
+ L ++ + K + LV E K GE + +WA
Sbjct: 362 RRLLELQKSILSEIAKKYEGTVQEVLVEEEKNGELIGRTTTNKWA 406
>ref|NP_281645.1| (NC_002163) hypothetical protein Cj0458c [Campylobacter jejuni]
pir||E81390 hypothetical protein Cj0458c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75096.1| (AL139075) hypothetical protein Cj0458c [Campylobacter jejuni]
Length = 433
Score = 139 bits (349), Expect = 9e-32
Identities = 102/383 (26%), Positives = 181/383 (46%), Gaps = 16/383 (4%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLY---NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + +LGC+ N+ DSE M+ +L NY LT D K AD+ILINTC E +
Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63
Query: 64 ILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSE 123
+ K KKEGA + GC + +EI + P VD G + KI I + +
Sbjct: 64 VGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTPKFMGVD 123
Query: 124 QVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+ + S +Y+ IS GC++ C++C +P +G S + I KE +
Sbjct: 124 IDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKAI 183
Query: 184 LKGYTDMTFIAQDSSSF---LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLEL 240
KG ++ + Q+ +++ ++ +K L+ + + L+ R +P +
Sbjct: 184 EKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPLHMDDKF 243
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIV 299
+ ++P MP+Q S +LK M+R ++ +L ++++ + ST IIV
Sbjct: 244 LEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSISTDIIV 303
Query: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-----EKVPKKTI----NA 350
P E+E +FEE L++ +F+++ F +S T A ++ E++ + + N
Sbjct: 304 AFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEEIASRRLSTLQNR 363
Query: 351 RIKALNKIALKHQNHSFKALLNK 373
+ L+KI K +N +FK L +
Sbjct: 364 HSEILDKIVKKQENKTFKVLFEE 386
>ref|NP_389583.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O31778|YMCB_BACSU Hypothetical protein ymcB
pir||D69884 conserved hypothetical protein ymcB - Bacillus subtilis
emb|CAB13574.1| (Z99112) similar to hypothetical proteins [Bacillus subtilis]
Length = 509
Score = 139 bits (349), Expect = 9e-32
Identities = 103/393 (26%), Positives = 188/393 (47%), Gaps = 17/393 (4%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
+ ++ + + GC N D+EVM G Y TN A+VIL+NTC E+A+ +
Sbjct: 64 DGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFG 123
Query: 63 TI--LNAAKDKKEGAILIASGCLS--ERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK- 117
+ L A K IL GC+S E + I + P VD+ G + ++ ++++
Sbjct: 124 ELGHLKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAY 183
Query: 118 -QNQFSEQVFLSEH---YNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
+ +V+ E N + + +V I GC++ C++C +P +GK +SR +
Sbjct: 184 LSKEMVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPE 243
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYL-- 231
I++EV LA +GY ++T + Q+ ++ Y K +D L +D+ + + RI +
Sbjct: 244 DIIQEVRRLASEGYKEITLLGQNVNA--YGKDFEDMTYGLGDLMDELRKIDIPRIRFTTS 301
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKE 290
+P LI + ++ +P+Q S +LK M R + +++L+ +K+ +
Sbjct: 302 HPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPN 361
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
+ + + IIVG P E + +FEE + E +FD F +S E T A + + VP +
Sbjct: 362 ASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKK 421
Query: 350 ARIKALNKIALKHQNHSFKALLNKPIKALVENK 382
R++ LN + + K K ++ LVE +
Sbjct: 422 ERLQRLNALVNEISAKKMKEYEGKVVEVLVEGE 454
>ref|NP_658342.1| (NC_003995) UPF0004, Uncharacterized protein family UPF0004
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 450
Score = 138 bits (348), Expect = 1e-31
Identities = 106/360 (29%), Positives = 176/360 (48%), Gaps = 17/360 (4%)
Query: 13 SLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N ++E + L K Y T K ADV +INTC + ++S Q I A +
Sbjct: 8 TLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRAVRQ 67
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ A++ +GC ++ EI IP VDI G D +K+ I + + + +
Sbjct: 68 NPD-AVICVTGCYAQTSPAEIMA-IPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNI 125
Query: 131 YNARIITGSSV-------HAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
R+ V A +KI EGCN C+FC IP +G ++SR+ ++K+ + L
Sbjct: 126 MKTRVYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLV 185
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKD-GLIQLIRAIDKQ-QALKSARILYLYPSSTTLELI 241
GY ++ + Y + KD L L+R ++ + LK RI + S + E+I
Sbjct: 186 DAGYKEIVLTGIHTGG--YGEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEASQISDEVI 243
Query: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTIIVG 300
++ S + + +P+Q S+++LK+MRR + + LD +K+ I S +IVG
Sbjct: 244 EVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVG 303
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIA 359
P E E EF E F+ E +F L++F +S T A +E +VP+ N R+ L +++
Sbjct: 304 FPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELS 363
>ref|NP_230609.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82261 conserved hypothetical protein VC0962 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94124.1| (AE004177) conserved hypothetical protein [Vibrio cholerae]
Length = 474
Score = 137 bits (345), Expect = 3e-31
Identities = 102/397 (25%), Positives = 184/397 (45%), Gaps = 30/397 (7%)
Query: 6 NKQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
+K+L + + GC N DS M L Y LT + ADV+L+NTC E A+++
Sbjct: 2 SKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 63 TI--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
+ KDKK G ++ GC++ + D I++ P VD+ G ++ MI KQ+Q
Sbjct: 62 QLGRWKTLKDKKPGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMI--KQSQ 119
Query: 121 FSEQVFLSEHY-------NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
S+ + + A+V I EGC++ C++C +P +G+ SR +D
Sbjct: 120 TSDAPVMDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMD 179
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLI----QLIRAIDKQQALKSARIL 229
+L E+ LA +G ++ + Q+ ++ Y DG I +L+R + + R
Sbjct: 180 DVLFEIAQLAEQGVREVNLLGQNVNA--YRGATHDGGICSFAELLRLVATIDGIDRIRFT 237
Query: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK 289
+P T ++I E +P ++ +P+Q SD +L M+R + + ++ +++ +
Sbjct: 238 TSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKAR 297
Query: 290 ESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-----EKV 343
I S IVG P E + +F++ + + FD F FS T A E+V
Sbjct: 298 PDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEV 357
Query: 344 PKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE 380
K+ + + +N A+++ + +L + LVE
Sbjct: 358 KKERLYELQQQINSQAMRYS----RLMLGTEQRILVE 390
>ref|NP_371816.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374408.1| (NC_002745) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645992.1| (NC_003923) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42387.1| (AP003133) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57454.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95040.1| (AP004826) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 514
Score = 137 bits (344), Expect = 3e-31
Identities = 109/369 (29%), Positives = 183/369 (49%), Gaps = 20/369 (5%)
Query: 6 NKQLCLI-SLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
N++ LI + GC N D+EV+ G L Y T D +ADVILINTC E+A+ +
Sbjct: 66 NERTFLIKTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFS 125
Query: 63 TILNAAKDKKEGAILIAS--GCLS--ERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AK 116
I N KKE ++ GC+S E ++I + VD+ G + + ++ A
Sbjct: 126 EIGNLKHLKKERPDILIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAY 185
Query: 117 KQNQFSEQVFLSEH---YNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
+V+ E N + ++ A+V I GC++ C++C +P +GK +SR +
Sbjct: 186 LSKAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPE 245
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD---GLIQLIRAIDKQQALKSARILY 230
I+ EV LA +GY ++T + Q+ +S Y K +D L L++AI K A+ R
Sbjct: 246 DIIDEVRELAREGYKEITLLGQNVNS--YGKDLQDIEYDLGDLLQAISK-IAIPRVRFTT 302
Query: 231 LYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVK 289
+P T +I I + +P+Q ++++LK M R ++ +L L+ +K ++
Sbjct: 303 SHPWDFTDHMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIKDRIP 362
Query: 290 ESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTI 348
+ + IIVG+P E+E +FEE DE F+ + +S + T A + + VP
Sbjct: 363 NVALTTDIIVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPLNVK 422
Query: 349 NARIKALNK 357
R++ LNK
Sbjct: 423 KERLQRLNK 431
>ref|NP_646345.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95393.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 448
Score = 136 bits (342), Expect = 6e-31
Identities = 106/397 (26%), Positives = 189/397 (46%), Gaps = 41/397 (10%)
Query: 13 SLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N ++E + L K NY + +ADV +INTC + ++S Q I A +
Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQ 67
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI------------------DI 112
+ A++ +GC ++ EI E IP VD+ G D K+ +I
Sbjct: 68 NPD-AVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNI 125
Query: 113 MIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
M +K + F A +KI EGCN C+FC IP +G ++SR+
Sbjct: 126 MKNRKYEELDVPYFTDR-----------TRASLKIQEGCNNFCTFCIIPWARGLMRSRDP 174
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD-GLIQLIRAIDKQQALKSARILYL 231
+ ++++ L GY ++ + Y + KD L QL+R ++ L+ RI +
Sbjct: 175 EKVVEQATQLVNSGYKEIVLTGIHTGG--YGQDLKDYNLAQLLRDLETINGLERIRISSI 232
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM-KQVKE 290
S T E+I +E S + +P+Q SD++LK+MRR + + L + K + +
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
+ S +IVG P E E+EF+E F+ + +F L++F +S T A + +++ ++ N
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352
Query: 350 ARIKALNKIALKHQ-NHSFKALLNKPIKALVENKEGE 385
R+ L I L +Q + + ++ + ++ ++G+
Sbjct: 353 ERVHKL--ITLSNQLGKLYASKFDQDVLEVIPEEQGD 387
>ref|NP_372100.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374689.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42668.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57738.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 448
Score = 135 bits (341), Expect = 7e-31
Identities = 105/374 (28%), Positives = 178/374 (47%), Gaps = 40/374 (10%)
Query: 13 SLGCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+LGC N ++E + L K NY + +ADV +INTC + ++S Q I A +
Sbjct: 8 TLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQ 67
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI------------------DI 112
+ A++ +GC ++ EI E IP VD+ G D K+ +I
Sbjct: 68 NPD-AVICVTGCYAQTSSAEIME-IPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNI 125
Query: 113 MIAKKQNQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
M +K + F A +KI EGCN C+FC IP +G ++SR+
Sbjct: 126 MKNRKYEELDVPYFTDR-----------TRASLKIQEGCNNFCTFCIIPWARGLMRSRDP 174
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD-GLIQLIRAIDKQQALKSARILYL 231
+ ++++ L GY ++ + Y + KD L QL+R ++ L+ RI +
Sbjct: 175 EKVVEQATQLVNSGYKEIVLTGIHTGG--YGQDLKDYNLAQLLRDLETINGLERIRISSI 232
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM-KQVKE 290
S T E+I +E S + +P+Q SD++LK+MRR + + L + K + +
Sbjct: 233 EASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPD 292
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
+ S +IVG P E E+EF+E F+ + +F L++F +S T A + +++ ++ N
Sbjct: 293 LAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKN 352
Query: 350 ARIKALNKIALKHQ 363
R+ L I L +Q
Sbjct: 353 ERVHKL--ITLSNQ 364
>ref|NP_657738.1| (NC_003995) UPF0004, Uncharacterized protein family UPF0004
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 509
Score = 135 bits (340), Expect = 1e-30
Identities = 100/364 (27%), Positives = 177/364 (48%), Gaps = 21/364 (5%)
Query: 15 GCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAKD 70
GC N D+EVM G Y T + ADV+L+NTC E+A+ + + L + K
Sbjct: 74 GCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHLKSLKR 133
Query: 71 KKEGAILIASGCLS--ERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
+ ++ GC+S E ++I + VD+ G + ++ ++ K FS++ +
Sbjct: 134 RNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL--KDAMFSKETVVE 191
Query: 129 EHY-------NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
N + + A+V I GC++ C++C +P +GK +SR + I++E+ +
Sbjct: 192 VWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEIRH 251
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYL--YPSSTTLE 239
LA GY ++T + Q+ ++ Y K +D L +D+ + + ARI + +P
Sbjct: 252 LAANGYKEITLLGQNVNA--YGKDFEDIEYGLGDLMDELRKVDIARIRFTTSHPRDFDDH 309
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTII 298
LI + + +P+Q S MLK M R S+ H+L+L+ +K+ + + + + II
Sbjct: 310 LIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLTTDII 369
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKALNK 357
VG P E + +FEE + E FD F +S E T A + + VP + R++ LN
Sbjct: 370 VGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNA 429
Query: 358 IALK 361
+ K
Sbjct: 430 LVNK 433
>ref|NP_353388.1| (NC_003062) AGR_C_623p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86173.1| (AE007973) AGR_C_623p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 467
Score = 135 bits (339), Expect = 1e-30
Identities = 100/399 (25%), Positives = 187/399 (46%), Gaps = 27/399 (6%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQT 63
++++ + + GC N+ DS M L Y T D AD++L+NTC E A E + +
Sbjct: 21 SRKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAA-EKVYS 79
Query: 64 ILNAAKDKKEGA-------ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK 116
L +D K+ ++ +GC+++ +EI P VD+ G Y ++ A
Sbjct: 80 ALGRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPD--AL 137
Query: 117 KQNQFSEQVFLSEHY-----------NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKG 165
K+ + E+V +E+ + V A++ + EGC++ C+FC +P +G
Sbjct: 138 KRVRRGERVIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRG 197
Query: 166 KLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQAL 223
SR + I+ E L G ++T + Q+ +++ + KG+K GL +L+ + + L
Sbjct: 198 SEVSRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGL 257
Query: 224 KSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLD 283
R +P LIGA I Y +P+Q SD +LK M R + +++L++
Sbjct: 258 ARLRYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIE 317
Query: 284 AMKQVKESFIRS-TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-E 341
++ + S IVG P E + +FE+ A ++ ++ + F +S T L +
Sbjct: 318 KIRSARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTD 377
Query: 342 KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE 380
+V + R++ L + L+ Q ++L+ K + L+E
Sbjct: 378 QVAEDVKAERLERLQALLLRQQKEFAESLVGKTMDVLLE 416
>ref|NP_531062.1| (NC_003304) miaB protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
gb|AAL41378.1| (AE009007) miaB protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 455
Score = 135 bits (339), Expect = 1e-30
Identities = 100/399 (25%), Positives = 187/399 (46%), Gaps = 27/399 (6%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQT 63
++++ + + GC N+ DS M L Y T D AD++L+NTC E A E + +
Sbjct: 9 SRKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAA-EKVYS 67
Query: 64 ILNAAKDKKEGA-------ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK 116
L +D K+ ++ +GC+++ +EI P VD+ G Y ++ A
Sbjct: 68 ALGRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPD--AL 125
Query: 117 KQNQFSEQVFLSEHY-----------NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKG 165
K+ + E+V +E+ + V A++ + EGC++ C+FC +P +G
Sbjct: 126 KRVRRGERVIETEYAVEDKFEHLPVAEKATLRSRGVTAFLTVQEGCDKFCTFCVVPYTRG 185
Query: 166 KLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQAL 223
SR + I+ E L G ++T + Q+ +++ + KG+K GL +L+ + + L
Sbjct: 186 SEVSRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGL 245
Query: 224 KSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLD 283
R +P LIGA I Y +P+Q SD +LK M R + +++L++
Sbjct: 246 ARLRYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIE 305
Query: 284 AMKQVKESFIRS-TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-E 341
++ + S IVG P E + +FE+ A ++ ++ + F +S T L +
Sbjct: 306 KIRSARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTD 365
Query: 342 KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE 380
+V + R++ L + L+ Q ++L+ K + L+E
Sbjct: 366 QVAEDVKAERLERLQALLLRQQKEFAESLVGKTMDVLLE 404
>ref|NP_106183.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51969.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 450
Score = 135 bits (339), Expect = 1e-30
Identities = 109/421 (25%), Positives = 189/421 (44%), Gaps = 23/421 (5%)
Query: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQ 58
M+ K++ + + GC N+ DS+ M L YT T+ AD++L+NTC E A +
Sbjct: 1 MRATAAKKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAE 60
Query: 59 ESIQTILNAAKDKKEGAI------LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDI 112
+ + K E AI + +GC+++ EI P VD+ G Y ++
Sbjct: 61 KVYSELGRIRDMKAERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPD 120
Query: 113 MIAK--------KQNQFSEQVF--LSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPS 162
++A+ + + E F L + A +I V A++ + EGC++ C+FC +P
Sbjct: 121 VLARVRGGEKIVETDYAIEDKFDHLPQPKRAEVIK-RGVTAFLTVQEGCDKFCTFCVVPY 179
Query: 163 FKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSSF--LYDKGQKDGLIQLIRAIDKQ 220
+G SR + I+ E E LA G ++T + Q+ +++ + G++ GL +L+ + +
Sbjct: 180 TRGSEVSRPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGEEWGLGRLLFRLAEI 239
Query: 221 QALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLK 280
L R +P ELI A P Y +P+Q SD +LK M R + +L
Sbjct: 240 PGLARLRYTTSHPRDMDDELISAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLA 299
Query: 281 LLDAMKQVKESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS 339
LLD ++ + + IVG P E E++FE + + + F +S T
Sbjct: 300 LLDRIRAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAE 359
Query: 340 L-EKVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPE 398
+ + VP+ + R++ L + LK Q +L+ I L+E + K W
Sbjct: 360 MPDHVPETLKDERLQRLQALLLKQQQGFGSSLVGSTIDTLIEKPGRQAGQKVGRTPWLQP 419
Query: 399 V 399
V
Sbjct: 420 V 420
>ref|NP_642776.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37312.1| (AE011883) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 452
Score = 133 bits (334), Expect = 5e-30
Identities = 107/388 (27%), Positives = 174/388 (44%), Gaps = 25/388 (6%)
Query: 15 GCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
GC N DS M L LT+D + ADV+L+NTC E A QE + + L K
Sbjct: 12 GCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKA-QEKVFSQLGRWKAL 70
Query: 72 KEGA---ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
K G I+ GC++ + + I + P VD+ G ++ +I ++ QV +S
Sbjct: 71 KAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKSQVDIS 130
Query: 129 -------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+ G S A+V I EGC++ CSFC +P +G+ SR + +L EV
Sbjct: 131 FPEIEKFDRLPEPRAEGPS--AFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVEVAQ 188
Query: 182 LALKGYTDMTFIAQDSSSF-------LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
LA +G ++ + Q+ +++ D Q L LIR I + + + R +P
Sbjct: 189 LAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQIEGIGRIRFTTSHPL 248
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-I 293
+ L+ A P NY +P+Q SD +L M+R + + ++ V+ I
Sbjct: 249 EFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKLRAVRPDISI 308
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARI 352
S IVG P E E++FE+ +++ FD+ F +S T A L + P+ AR+
Sbjct: 309 SSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASDLQDDTPEAVKQARL 368
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVE 380
L H ++++ + LVE
Sbjct: 369 ARLQAHINAHAASISQSMVGSVQRVLVE 396
>ref|NP_562941.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81731.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 434
Score = 133 bits (334), Expect = 5e-30
Identities = 87/344 (25%), Positives = 171/344 (49%), Gaps = 12/344 (3%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ +LGC N +SE M K Y + + + ADV ++NTC ++S Q I
Sbjct: 2 KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV 125
A + E AI+ GC ++ E+ I VD+ G + +I + K +++ +QV
Sbjct: 62 RARRQNPE-AIIAVVGCYAQIAPTEVSG-IEGVDVVLGSRNKGEIVYYVNKARDEGKQQV 119
Query: 126 FLSEHYNARIIT-------GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ ++ + A++KI +GCN+ C++C IP +G + S++ +L E
Sbjct: 120 KVGAVLKNKVFEDLKIEEYNNKTRAFLKIQDGCNRFCAYCLIPYTRGSVCSKDPKKVLDE 179
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
+ +LA G+ ++ ++S+ D +K L+ L+ I+K ++ RI + P+ T
Sbjct: 180 IRSLAEHGFKEIILSGIHTASYGVDLDEKVTLVDLLEEIEKIDGIERVRIGSIDPTFFTE 239
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTI 297
+++ I + +F + +Q D+ LK+M R + + +++ ++ ++++ I + +
Sbjct: 240 DVVRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKIEDVSITTDV 299
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE 341
IVG P E + EFEE FL + +IF +S + T A ++E
Sbjct: 300 IVGFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENME 343
>ref|NP_243238.1| (NC_002570) BH2372~unknown conserved protein [Bacillus halodurans]
dbj|BAB06091.1| (AP001515) BH2372~unknown conserved protein [Bacillus halodurans]
Length = 538
Score = 132 bits (333), Expect = 6e-30
Identities = 100/395 (25%), Positives = 186/395 (46%), Gaps = 25/395 (6%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64
K+ + + GC N+ DSE M G L + T++ ADVILINTC E+A+ + I
Sbjct: 95 KKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEI 154
Query: 65 LNAAKDKKEGAILIAS--GCLS--ERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
N + K+E L+ GC+S E + I + +D+ G + ++ ++ +
Sbjct: 155 GNLKQLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLL--RNAL 212
Query: 121 FSEQVFLSEHYNARIITGS-------SVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
F +++ + I + A+V I GC++ C++C +P +GK +SR +
Sbjct: 213 FGKEMIIEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPE 272
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD----GLIQLIRAIDKQQALKSARIL 229
I++EV +LA +GY ++T + Q+ +++ D D L+ IR ID + R
Sbjct: 273 DIIQEVRDLARQGYKEITLLGQNVNAYGKDLADLDYGLGDLMDEIRKID----IPRVRFT 328
Query: 230 YLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-V 288
+P LI + + +P+QH + +LK M R ++ +++L +K+ +
Sbjct: 329 TSHPRDFDDHLIEVLAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQKIKRAI 388
Query: 289 KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKT 347
+ + +IVG P E + +FE+ + + E +FD + +S E T A + + VP +
Sbjct: 389 PNASFTTDLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVPMEV 448
Query: 348 INARIKALNKIALKHQNHSFKALLNKPIKALVENK 382
R+ LN + +K ++ LVE +
Sbjct: 449 KRERLARLNALVNDISAQKNLEYQDKVVEVLVEGE 483
>ref|NP_252669.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
sp|Q51470|Y3I0_PSEAE Hypothetical protein PA3980
pir||F83147 conserved hypothetical protein PA3980 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07367.1|AE004816_3 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 446
Score = 132 bits (333), Expect = 6e-30
Identities = 100/365 (27%), Positives = 172/365 (46%), Gaps = 18/365 (4%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M LG+ +T +A ADVIL+NTC E A+++
Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K + ++ GC++ + I+E P VD+ G ++ MI ++
Sbjct: 63 LGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTR 122
Query: 122 SEQVFLS-------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
QV +S + + G + A+V + EGC++ CSFC +P +G+ SR D
Sbjct: 123 KPQVDVSFPEIEKFDRLPEPRVDGPT--AFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDD 180
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSF--LYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
++ EV +LA G ++T + Q+ + F L G+ +L+R + ++ R +
Sbjct: 181 VIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRYTTSH 240
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKES 291
P + LI A P + +P+Q SD +L M+RN + + + +K V +
Sbjct: 241 PLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKAAVPDI 300
Query: 292 FIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINA 350
I S IVG P E E +FE+ +++ FD F +SA T A L + +P++
Sbjct: 301 CISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPEEVKKQ 360
Query: 351 RIKAL 355
R++ L
Sbjct: 361 RLQIL 365
>ref|NP_217249.1| (NC_000962) hypothetical protein Rv2733c [Mycobacterium
tuberculosis H37Rv]
sp|O33238|YR33_MYCTU Hypothetical protein Rv2733c
pir||D70506 hypothetical protein Rv2733c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB10909.1| (Z98209) hypothetical protein Rv2733c [Mycobacterium tuberculosis
H37Rv]
Length = 512
Score = 131 bits (329), Expect = 2e-29
Identities = 97/387 (25%), Positives = 180/387 (46%), Gaps = 17/387 (4%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC N+ DSE + G L Y D ADV++ NTC E+A + + A K+
Sbjct: 33 GCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSHLAPRKR 92
Query: 73 EGAIL--IASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSE- 129
+ GCL+++ +D + P VD+ G + + ++ + ++ QV ++E
Sbjct: 93 ANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHNKVAQVEIAEA 152
Query: 130 --HYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+ + + + S+ A+V IS GCN C+FC +PS +G+ R IL EV +L
Sbjct: 153 LQQFPSSLPSSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVND 212
Query: 186 GYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLE 239
G ++T + Q+ +++ + +L+RA L+ R +P+ T +
Sbjct: 213 GVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLERVRFTSPHPAEFTDD 272
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTII 298
+I A+ + MP+Q SD +L+ MRR+ +L +++ ++ + + I + +I
Sbjct: 273 VIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAAITTDLI 332
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNK 357
VG P E E +F + +F F +S T A L+ ++PK + R + L
Sbjct: 333 VGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQLPKAVVQERYERLIA 392
Query: 358 IALKHQNHSFKALLNKPIKALVENKEG 384
+ + + +AL+ + ++ LV EG
Sbjct: 393 LQEQISLEANRALVGQAVEVLVATGEG 419
>ref|NP_406146.1| (NC_003143) putative tRNA-thiotransferase [Yersinia pestis]
emb|CAC92863.1| (AJ414153) putative tRNA-thiotransferase [Yersinia pestis]
Length = 474
Score = 131 bits (329), Expect = 2e-29
Identities = 94/349 (26%), Positives = 162/349 (45%), Gaps = 17/349 (4%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M L + Y LT + AD++L+NTC E A QE + +
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKA-QEKVFS 61
Query: 64 ILNA---AKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
+L K+K I+ GC++ + +++++ P VD+ G ++ MI Q
Sbjct: 62 LLGQWKLLKEKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHVQGT 121
Query: 121 FSEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSI 175
S V +S + A+V I EGCN+ C+FC +P +G+ SR D I
Sbjct: 122 NSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDI 181
Query: 176 LKEVENLALKGYTDMTFIAQDSSSF---LYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
L E+ LA +G ++ + Q+ +++ YD G +L+R + + R +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAYRGATYD-GDICSFAELLRLVAAIDGIDRVRFTTSH 240
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF 292
P T ++I +P ++ +P+Q SD +L M+R + + ++ ++Q +
Sbjct: 241 PIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARPDI 300
Query: 293 -IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL 340
I S IVG P E + +FE+ + + FD F +S T A L
Sbjct: 301 QISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADL 349
>pir||S57900 conserved hypothetical protein 2 (hemL 3' region) - Pseudomonas
aeruginosa
emb|CAA57577.1| (X82072) orf2 [Pseudomonas aeruginosa]
Length = 446
Score = 131 bits (329), Expect = 2e-29
Identities = 102/366 (27%), Positives = 174/366 (46%), Gaps = 20/366 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M LG+ +T +A ADVIL+NTC E QE + +
Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKV-QEKVCS 61
Query: 64 ILNAAKDKKE---GAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ 120
L ++ K+ ++ GC++ + I+E P VD+ G ++ MI ++
Sbjct: 62 KLGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARST 121
Query: 121 FSEQVFLS-------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
QV +S + + G + A+V + EGC++ CSFC +P +G+ SR D
Sbjct: 122 RKPQVDVSFPEIEKFDRLPEPRVDGPT--AFVSVMEGCSKYCSFCVVPYTRGEEVSRPFD 179
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSF--LYDKGQKDGLIQLIRAIDKQQALKSARILYL 231
++ EV +LA G ++T + Q+ + F L G+ +L+R + ++ R
Sbjct: 180 DVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRYTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKE 290
+P + LI A P + +P+Q SD +L M+RN + + + +K V +
Sbjct: 240 HPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKAAVPD 299
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E E +FE+ +++ FD F +SA T A L + +P++
Sbjct: 300 ICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPEEVKK 359
Query: 350 ARIKAL 355
R++ L
Sbjct: 360 QRLQIL 365
>ref|NP_070075.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
sp|O29021|YC47_ARCFU Hypothetical protein AF1247
pir||F69405 conserved hypothetical protein AF1247 - Archaeoglobus fulgidus
gb|AAB89997.1| (AE001018) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 405
Score = 130 bits (328), Expect = 2e-29
Identities = 99/363 (27%), Positives = 184/363 (50%), Gaps = 29/363 (7%)
Query: 37 NDAKSADVILINTCGFIESAKQESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIP 96
+ + A+V++IN+CG I+ +++ I+ +L+ K+EG ++ +GCL+ K+ +
Sbjct: 12 SSVEDAEVVIINSCGVIDFTERKIIRRMLDL---KREGKKVVLAGCLTRISKEALS---- 64
Query: 97 EVDIFTGVGDYDKIDIMI------AKKQNQFSEQVFLSE----HYNARIITGSSVHAYVK 146
+ D +D+++ + F+E+ F+ + H R+ + A V
Sbjct: 65 ---VADSALSPDNLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKCRL--RENAIAIVS 119
Query: 147 ISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQ 206
ISEGC KCSFCA +G+L+S +D+I++E E GY ++ +QD+ ++ DKG
Sbjct: 120 ISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKG- 178
Query: 207 KDGLIQLIRAIDKQQALKSARILYLYPSSTTL---ELIGAIESSPIFQNYFDMPIQHISD 263
+ L +L+R I + + R+ + P ELI A S I++ + +P+Q +
Sbjct: 179 RAMLPELLRKISEIEGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYK-FLHIPVQSGDN 237
Query: 264 SMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIVGHPEENESEFEELSAFLDEFQFD 322
+L+ M+RN + ++++++A + + + ST IIVG P E E F + + E + D
Sbjct: 238 RILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPD 297
Query: 323 RLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENK 382
+NI +SA + T A L +P R + L + K + K + K ++ LV K
Sbjct: 298 IVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRVLV-TK 356
Query: 383 EGE 385
EG+
Sbjct: 357 EGK 359
>ref|NP_337308.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
gb|AAK47122.1| (AE007108) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 512
Score = 130 bits (328), Expect = 2e-29
Identities = 97/387 (25%), Positives = 180/387 (46%), Gaps = 17/387 (4%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC N+ DSE + G L Y D ADV++ NTC E+A + + A K+
Sbjct: 33 GCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSHLAPRKR 92
Query: 73 EGAIL--IASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSE- 129
+ GCL+++ +D + P VD+ G + + ++ + ++ QV ++E
Sbjct: 93 ANPDMQIAVGGCLAQKDRDAVLXRAPWVDVVFGTHNIGSLPTLLERARHNKVAQVEIAEA 152
Query: 130 --HYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALK 185
+ + + + S+ A+V IS GCN C+FC +PS +G+ R IL EV +L
Sbjct: 153 LQQFPSSLPSSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVRSLVND 212
Query: 186 GYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLE 239
G ++T + Q+ +++ + +L+RA L+ R +P+ T +
Sbjct: 213 GVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLERVRFTSPHPAEFTDD 272
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTII 298
+I A+ + MP+Q SD +L+ MRR+ +L +++ ++ + + I + +I
Sbjct: 273 VIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAAITTDLI 332
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNK 357
VG P E E +F + +F F +S T A L+ ++PK + R + L
Sbjct: 333 VGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQLPKAVVQERYERLIA 392
Query: 358 IALKHQNHSFKALLNKPIKALVENKEG 384
+ + + +AL+ + ++ LV EG
Sbjct: 393 LQEQISLEANRALVGQAVEVLVATGEG 419
>ref|NP_245938.1| (NC_002663) unknown [Pasteurella multocida]
sp|Q9L699|YA01_PASMU Hypothetical protein PM1001
gb|AAF68426.1|AF237940_1 (AF237940) conserved hypothetical protein [Pasteurella multocida]
gb|AAK03085.1| (AE006140) unknown [Pasteurella multocida]
Length = 474
Score = 130 bits (328), Expect = 2e-29
Identities = 103/391 (26%), Positives = 180/391 (45%), Gaps = 20/391 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
++L + + GC N DS M L + LT + ADV+L+NTC E A+++
Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K K G ++ GC++ + + I+ P VDI G ++ MI + +
Sbjct: 63 LGRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQIRGGK 122
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ CSFC +P +G+ SR +D +L
Sbjct: 123 SSVVDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDVL 182
Query: 177 KEVENLALKGYTDMTFIAQDSSSF---LYDKG--QKDGLIQLIRAIDKQQALKSARILYL 231
E+ LA +G ++ + Q+ +++ +D G L++L+ AID + R
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAID---GIDRLRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-E 290
+P T ++I +P ++ +P+Q SD +L M+RN + + ++ ++ V+ E
Sbjct: 240 HPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKLRAVRPE 299
Query: 291 SFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E +FE+ + + FD F +SA T A + + V ++
Sbjct: 300 IQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVTEEEKK 359
Query: 350 ARIKALNKIALKHQNHSFKALLNKPIKALVE 380
R+ L + +A+L + LVE
Sbjct: 360 QRLYVLQQRINNQAAQFSRAMLGTEQRVLVE 390
>sp|Q49573|Y16R_MYCIO Hypothetical 51.3 kDa protein in 16S RNA 5'region
Length = 438
Score = 130 bits (327), Expect = 3e-29
Identities = 102/384 (26%), Positives = 185/384 (47%), Gaps = 19/384 (4%)
Query: 13 SLGCSKNLVDSEVMLGKLYNYTLTN---DAKSADVILINTCGFIESAKQESIQTILNAAK 69
+LGC NL +S + L L D+K ADV +INTC A +S I A
Sbjct: 14 TLGCKVNLFESNSIKNDLIMNGLVEVPFDSK-ADVYIINTCTVTNKADAKSRLYIKRAHV 72
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDI--------FTGVGDYDKIDIMIAKKQNQF 121
K+ AI+I +GC+S+ KD + +L + I F + +Y K I + +N
Sbjct: 73 QNKD-AIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRERIYRVENIL 131
Query: 122 SEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+E+ F E I + A++KI +GCN CS+C IP +G+ +S++++SIL++++
Sbjct: 132 AEKKF--EQTTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKT 189
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
L K + ++ +++ +L + + L+ I+K RI L P E+I
Sbjct: 190 LVSKXFKEIVLTGVNTAGYLDE--NNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEII 247
Query: 242 GAIESS-PIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLD-AMKQVKESFIRSTIIV 299
+ S+ F ++ + +Q SD +LKKM R + KL+ + + + + IV
Sbjct: 248 DLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYIV 307
Query: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIA 359
G P E + + ++ FL++ + ++IF +S NT + + + T R+K + K+
Sbjct: 308 GFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKDINDSTKKDRVKEITKLN 367
Query: 360 LKHQNHSFKALLNKPIKALVENKE 383
++ + K + K + L E K+
Sbjct: 368 YLNKKENLKKYIGKTCEVLFEKKK 391
>ref|NP_660758.1| (NC_004061) hypothetical 53.7 kD protein in cutE-glnX [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67969.1| (AE014118) hypothetical 53.7 kD protein in cutE-glnX [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 439
Score = 129 bits (325), Expect = 5e-29
Identities = 98/406 (24%), Positives = 187/406 (45%), Gaps = 18/406 (4%)
Query: 7 KQLCLISLGCSKNLVDSE---VMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K + + + GC N DS V L K Y +T + + AD++++NTC E A+++
Sbjct: 2 KYIYIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFHQ 61
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+KK I+ GC++ + EI + VDI G K+ MI K +
Sbjct: 62 LGRWKKLKNKKPDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKVEKNR 121
Query: 122 SEQVFLS----EHYNARIITGSSVH-AYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
+ +S E +N + + + A + I EGCN+ CSFC +P +G SR D IL
Sbjct: 122 RFMIDISFPQLEKFNYSLEPKKTGYTASISIMEGCNKYCSFCVVPYTRGHEISRPSDDIL 181
Query: 177 KEVENLALKGYTDMTFIAQDSSSF--LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
E+ LA G ++ + Q+ +++ G+ +L+R + + + R P
Sbjct: 182 LEISILAENGVREINLLGQNVNAYRGRTFNGKICFFSELLRLVSEIDGIDRIRFTTSNPL 241
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-I 293
T ++I + +P ++ +P+Q S+ +L+ M+R+ + + K+++ + + + I
Sbjct: 242 EFTDDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKLILARSNIQI 301
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-----KVPKKTI 348
S IVG P E+E +F++ F+ + FD F +S+ T A ++ + KK +
Sbjct: 302 SSDFIVGFPSESEEDFQKTINFIKKINFDMSFSFIYSSRPGTPASEMKDNIDLQEKKKRL 361
Query: 349 NARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLR 394
+NK + K+ + ++ + + E + K + R
Sbjct: 362 YTLQNCINKQTMSWSRKMLKSTQSVLVEGVSKKNIMELYGKTENNR 407
>ref|NP_298196.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82747 conserved hypothetical protein XF0906 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83716.1|AE003930_6 (AE003930) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 497
Score = 129 bits (324), Expect = 7e-29
Identities = 98/369 (26%), Positives = 171/369 (45%), Gaps = 28/369 (7%)
Query: 15 GCSKNLVDSEVMLGKLYN---YTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAK 69
GC N DS M L LT++ + AD+ILINTC E A+++ + A K
Sbjct: 56 GCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQLGRWRALK 115
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS- 128
I+ GC++ + + I + P VD+ G ++ MI ++ Q QV +
Sbjct: 116 TSGRDVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPDMIRARREQNRPQVDIRF 175
Query: 129 ------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
+H G S A+V I EGC++ CSFC +P +G+ SR + +L E+ +L
Sbjct: 176 PEIEKFDHLPTPRAEGPS--AFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLTEIAHL 233
Query: 183 ALKGYTDMTFIAQDSSSF--LYDKGQKDG----------LIQLIRAIDKQQALKSARILY 230
A +G ++ + Q+ +++ D G + L LIRAI + +++ R
Sbjct: 234 ATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRAIAQFESIGRIRFTT 293
Query: 231 LYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKE 290
+P + L+ A P N+ +P+Q SD +L M+R + + ++ V+
Sbjct: 294 SHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTALEFKSKIRKLRAVRP 353
Query: 291 SF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTI 348
I S I+G P E++++F++ +++ FD+ F +S T A +LE P +
Sbjct: 354 DISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPASNLEDHTPDEIK 413
Query: 349 NARIKALNK 357
R++ L K
Sbjct: 414 RTRLEHLQK 422
>ref|NP_384511.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41842.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 472
Score = 129 bits (324), Expect = 7e-29
Identities = 98/387 (25%), Positives = 176/387 (45%), Gaps = 21/387 (5%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC N+ DS+ M L Y T+ + AD +L+NTC E A ++ + + KK
Sbjct: 30 GCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVYSELGRLRELKK 89
Query: 73 EGAI------LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AKKQNQFSEQ 124
A+ + +GC+++ DEI +P VD+ G Y ++ + A+ + E
Sbjct: 90 AKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALKRARAGQRIVET 149
Query: 125 VFLSEHYNARI-------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILK 177
+ E + V A++ + EGC++ C+FC +P +G SR + I+
Sbjct: 150 EYAIEDKFVHLPAPDKAKTRARGVTAFLTVQEGCDKFCTFCVVPYTRGSEVSRPVAQIVA 209
Query: 178 EVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPSS 235
E E L G ++T + Q+ +++ + G++ L L+R + + L R +P
Sbjct: 210 EAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLARLRYTTSHPRD 269
Query: 236 TTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IR 294
LI A S Y +P+Q SD +LK M R + A +L L++ ++ + +
Sbjct: 270 MDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVERIRAAQPDLALS 329
Query: 295 STIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIK 353
IVG P E + +FE+ ++E + + F +S T L E+VP+ R++
Sbjct: 330 GDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQVPEDVKAKRLE 389
Query: 354 ALNKIALKHQNHSFKALLNKPIKALVE 380
L + +K Q +A + + I L+E
Sbjct: 390 ILQALLVKQQRGFAEACVGREIDLLLE 416
>ref|NP_221158.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCE8|Y808_RICPR Hypothetical protein RP808
pir||B71642 hypothetical protein RP808 - Rickettsia prowazekii
emb|CAA15234.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 445
Score = 129 bits (323), Expect = 9e-29
Identities = 89/372 (23%), Positives = 177/372 (46%), Gaps = 21/372 (5%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
+K+L + + GC N+ DS + LY Y T D K AD+I++NTC E A +++
Sbjct: 2 SKKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSE 61
Query: 64 ILNAAK----DKKEG---AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK 116
+ K K+EG AI++ +GC+++ +EI P VDI G Y + +I+K
Sbjct: 62 LGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELISK 121
Query: 117 KQNQFSEQVFLSEHYNARI------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170
+ + L A+ + +++ + EGC++ C+FC +P +G SR
Sbjct: 122 VVRHEKQLIDLDFVEEAKFDNLPEQLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSR 181
Query: 171 ELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD---GLIQLIRAIDKQQALKSAR 227
++ + +E ++ + Q+ +++ + KG KD L L++ + + L R
Sbjct: 182 SVEQVYRESLKAVSNDAKEIILLGQNVNAY-HGKGPKDKIFTLADLLKCLAQIPNLARLR 240
Query: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287
+ +P T +LI + P + +P+Q S+ +LK M R + ++ +++ +++
Sbjct: 241 YMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRLRE 300
Query: 288 VKESFIRST-IIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENT-HAYSLEKVPK 345
+ + S+ IVG P E E +FE+ + ++ + F +S T A +++P+
Sbjct: 301 ARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTDQIPE 360
Query: 346 KTINARIKALNK 357
+ R+ L +
Sbjct: 361 HIKSKRLTILQQ 372
>ref|NP_286386.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG54994.1|AE005245_3 (AE005245) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 474
Score = 128 bits (322), Expect = 1e-28
Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 20/391 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M L + Y LT+ A+ ADV+L+NTC E A+++
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+K I+ GC++ + + I++ VDI G ++ MI +
Sbjct: 63 LGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ C++C +P +G+ SR D IL
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDIL 182
Query: 177 KEVENLALKGYTDMTFIAQDSSSFL---YD--KGQKDGLIQLIRAIDKQQALKSARILYL 231
E+ LA +G ++ + Q+ +++ YD G L++L+ AID + R
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAID---GIDRIRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T ++I +P ++ +P+Q SD +L M R + + ++ ++ +
Sbjct: 240 HPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E +FE+ + + FD F FSA T A + + VP++
Sbjct: 300 IQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKK 359
Query: 350 ARIKALNKIALKHQNHSFKALLNKPIKALVE 380
R+ L + + + +L + LVE
Sbjct: 360 QRLYILQERINQQAMAWXRRMLGTTQRILVE 390
>ref|NP_308726.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415194.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77645|YLEA_ECOLI Hypothetical protein yleA
pir||C64801 yleA protein - Escherichia coli
gb|AAB40863.1| (U82598) HI0019 homolog [Escherichia coli]
gb|AAC73762.1| (AE000170) orf, hypothetical protein [Escherichia coli K12]
dbj|BAB34122.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 474
Score = 128 bits (321), Expect = 2e-28
Identities = 99/368 (26%), Positives = 170/368 (45%), Gaps = 20/368 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M L + Y LT+ A+ ADV+L+NTC E A+++
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+K I+ GC++ + + I++ VDI G ++ MI +
Sbjct: 63 LGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ C++C +P +G+ SR D IL
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDIL 182
Query: 177 KEVENLALKGYTDMTFIAQDSSSFL---YD--KGQKDGLIQLIRAIDKQQALKSARILYL 231
E+ LA +G ++ + Q+ +++ YD G L++L+ AID + R
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAID---GIDRIRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T ++I +P ++ +P+Q SD +L M R + + ++ ++ +
Sbjct: 240 HPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E +FE+ + + FD F FSA T A + + VP++
Sbjct: 300 IQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKK 359
Query: 350 ARIKALNK 357
R+ L +
Sbjct: 360 QRLYILQE 367
>ref|NP_455239.1| (NC_003198) MiaB protein (putative tRNA-thiotransferase (or
tRNA-methylthiotransferase)) [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD05141.1| (AL627267) MiaB protein (putative tRNA-thiotransferase (or
tRNA-methylthiotransferase)) [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 488
Score = 127 bits (320), Expect = 2e-28
Identities = 99/368 (26%), Positives = 170/368 (45%), Gaps = 20/368 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M L + Y LT+ A+ ADV+L+NTC E A+++
Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+K I+ GC++ + + I++ VDI G ++ MI +
Sbjct: 77 LGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 136
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ C++C +P +G+ SR D IL
Sbjct: 137 SPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDIL 196
Query: 177 KEVENLALKGYTDMTFIAQDSSSFL---YD--KGQKDGLIQLIRAIDKQQALKSARILYL 231
E+ LA +G ++ + Q+ +++ YD G L++L+ AID + R
Sbjct: 197 FEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAID---GIDRIRFTTS 253
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T ++I +P ++ +P+Q SD +L M R + + ++ ++ +
Sbjct: 254 HPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPD 313
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E +FE+ + + FD F FSA T A + + VP++
Sbjct: 314 IQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKK 373
Query: 350 ARIKALNK 357
R+ L +
Sbjct: 374 QRLYILQE 381
>ref|NP_301734.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
sp|Q49842|YR33_MYCLE Hypothetical protein ML0989
emb|CAC31370.1| (AL583920) conserved hypothetical protein [Mycobacterium leprae]
Length = 517
Score = 127 bits (320), Expect = 2e-28
Identities = 100/390 (25%), Positives = 177/390 (44%), Gaps = 20/390 (5%)
Query: 15 GCSKNLVDSEVMLGKL----YNYTLTN-DAKSADVILINTCGFIESAKQESIQTILNAAK 69
GC N+ DSE + G L Y D ADV++ NTC E+A + + A
Sbjct: 26 GCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGNLSHLAP 85
Query: 70 DKKEGAIL--IASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL 127
K+ + GCL+++ K + P VDI G + + ++ + ++ QV +
Sbjct: 86 RKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRARHNKVAQVEI 145
Query: 128 SE---HYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
E H+ + + + S A+V IS GCN C+FC +PS +GK R IL EVE L
Sbjct: 146 VEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEAL 205
Query: 183 ALKGYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
G ++T + Q+ +++ + +L+R+ L+ R +P+
Sbjct: 206 VADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELLRSCGSIDGLERVRFTSPHPAEF 265
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
T ++I A+ +P MP+Q SD +L+ MRR+ +L ++ ++ + + I +
Sbjct: 266 TYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAAMPHAAITT 325
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
+IVG P E E +F + + +F F +S T A L ++PK + R +
Sbjct: 326 DLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRPGTPAAELGGQLPKAVVQERYER 385
Query: 355 LNKIALKHQNHSFKALLNKPIKALVENKEG 384
L ++ + + L+ + ++ LV EG
Sbjct: 386 LVELQEQICMEENRVLIGRIVELLVTTGEG 415
>pir||S72937 hypothetical protein B2235_C2_195 - Mycobacterium leprae
gb|AAA17273.1| (U00019) B2235_C2_195 [Mycobacterium leprae]
Length = 516
Score = 127 bits (320), Expect = 2e-28
Identities = 100/390 (25%), Positives = 177/390 (44%), Gaps = 20/390 (5%)
Query: 15 GCSKNLVDSEVMLGKL----YNYTLTN-DAKSADVILINTCGFIESAKQESIQTILNAAK 69
GC N+ DSE + G L Y D ADV++ NTC E+A + + A
Sbjct: 25 GCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGNLSHLAP 84
Query: 70 DKKEGAIL--IASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL 127
K+ + GCL+++ K + P VDI G + + ++ + ++ QV +
Sbjct: 85 RKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRARHNKVAQVEI 144
Query: 128 SE---HYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
E H+ + + + S A+V IS GCN C+FC +PS +GK R IL EVE L
Sbjct: 145 VEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEVEAL 204
Query: 183 ALKGYTDMTFIAQDSSSFLYD------KGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
G ++T + Q+ +++ + +L+R+ L+ R +P+
Sbjct: 205 VADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELLRSCGSIDGLERVRFTSPHPAEF 264
Query: 237 TLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRS 295
T ++I A+ +P MP+Q SD +L+ MRR+ +L ++ ++ + + I +
Sbjct: 265 TYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAAMPHAAITT 324
Query: 296 TIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARIKA 354
+IVG P E E +F + + +F F +S T A L ++PK + R +
Sbjct: 325 DLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRPGTPAAELGGQLPKAVVQERYER 384
Query: 355 LNKIALKHQNHSFKALLNKPIKALVENKEG 384
L ++ + + L+ + ++ LV EG
Sbjct: 385 LVELQEQICMEENRVLIGRIVELLVTTGEG 414
>ref|NP_459662.1| (NC_003197) methylthiolation of isopentenylated A37 derivatives in
rRNA [Salmonella typhimurium LT2]
emb|CAB62263.1| (AJ249116) MiaB protein [Salmonella typhimurium]
gb|AAL19621.1| (AE008727) methylthiolation of isopentenylated A37 derivatives in
rRNA [Salmonella typhimurium LT2]
Length = 474
Score = 127 bits (320), Expect = 2e-28
Identities = 99/368 (26%), Positives = 170/368 (45%), Gaps = 20/368 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K+L + + GC N DS M L + Y LT+ A+ ADV+L+NTC E A+++
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ K+K I+ GC++ + + I++ VDI G ++ MI +
Sbjct: 63 LGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ C++C +P +G+ SR D IL
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDIL 182
Query: 177 KEVENLALKGYTDMTFIAQDSSSFL---YD--KGQKDGLIQLIRAIDKQQALKSARILYL 231
E+ LA +G ++ + Q+ +++ YD G L++L+ AID + R
Sbjct: 183 FEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAID---GIDRIRFTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T ++I +P ++ +P+Q SD +L M R + + ++ ++ +
Sbjct: 240 HPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I S IVG P E +FE+ + + FD F FSA T A + + VP++
Sbjct: 300 IQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKK 359
Query: 350 ARIKALNK 357
R+ L +
Sbjct: 360 QRLYILQE 367
>ref|NP_637682.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41606.1| (AE012340) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 485
Score = 126 bits (316), Expect = 6e-28
Identities = 105/388 (27%), Positives = 171/388 (44%), Gaps = 25/388 (6%)
Query: 15 GCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
GC N DS M L LT++ + ADV+L+NTC E A QE + + L K
Sbjct: 45 GCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKA-QEKVFSQLGRWKAL 103
Query: 72 KEGA---ILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS 128
K G I+ GC++ + + I + P VD+ G ++ +I ++ QV +S
Sbjct: 104 KAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKSQVDIS 163
Query: 129 -------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+ G S A+V I EGC++ CSFC +P +G+ SR + +L EV
Sbjct: 164 FPEIEKFDRLPEPRADGPS--AFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVEVAQ 221
Query: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDG-------LIQLIRAIDKQQALKSARILYLYPS 234
LA +G ++ + Q+ +++ G G L LIR I + + R +P
Sbjct: 222 LAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTIAQIDGIGRIRFTTSHPL 281
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-I 293
+ L+ A P NY +P+Q SD +L M+R + + ++ V+ I
Sbjct: 282 EFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKLRAVRPDISI 341
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARI 352
S IVG P E +++F++ +++ FD+ F +S T A LE P AR+
Sbjct: 342 SSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPASDLEDDTPDAVKQARL 401
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVE 380
L H + ++ + LVE
Sbjct: 402 ARLQAHINAHAAGISQRMVGSVQRVLVE 429
>ref|NP_228639.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9WZT7|Y830_THEMA Hypothetical protein TM0830
pir||B72328 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35912.1|AE001750_6 (AE001750) conserved hypothetical protein [Thermotoga maritima]
Length = 434
Score = 124 bits (312), Expect = 2e-27
Identities = 94/384 (24%), Positives = 187/384 (48%), Gaps = 18/384 (4%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
K + + + GC N +SE M +L Y + D +A I +N+C + +++ ++ +
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAAYYI-VNSCAVTKEVEKK-VKRL 59
Query: 65 LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQ 124
+ + +++ + A +I +GC ++ DE K L VD+ G+ + I I + +Q
Sbjct: 60 IKSIRNRNKNAKIILTGCFAQLSPDEAKNL--PVDMVLGIDEKKHIVDHINSLNGK--QQ 115
Query: 125 VFLSEHYNA--RIITGS---SVHAYVKISEGCNQKCSFCAIPSFKG-KLQSRELDSILKE 178
V +SE + GS +Y+K+ +GC+ C++CAI +G +++S+ L+ +E
Sbjct: 116 VVVSEPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEE 175
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
+ +KGY ++ + + D G L +L++ I+K R+ +
Sbjct: 176 FAEMVMKGYKEIVITGVNLGKYGKDMGSS--LAELLKVIEKVPGDYRVRLSSINVEDVND 233
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTI 297
E++ A + +P + + +Q SD +LK+M R + ++++D ++ + F I + I
Sbjct: 234 EIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDI 293
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALN 356
IVG P E +++F+ +++ +F R++IF FS T A +E VP+ R+ L
Sbjct: 294 IVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLK 353
Query: 357 KIALKHQNHSFKALLNKPIKALVE 380
+ A K ++ K K L E
Sbjct: 354 EKAKDVSIRYRKRIIGKERKVLAE 377
>ref|NP_224673.1| (NC_000922) Hypothetical Protein [Chlamydophila pneumoniae CWL029]
pir||G72074 hypothetical protein - Chlamydophila pneumoniae (strain CWL029)
gb|AAD18617.1| (AE001632) Hypothetical Protein [Chlamydophila pneumoniae CWL029]
Length = 421
Score = 124 bits (312), Expect = 2e-27
Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 28/385 (7%)
Query: 11 LISLGCSKNLVDSEVMLGKL----YNYTLTNDAKSADVILINTCGFIESAKQESIQTILN 66
L+ LGC N + + +L Y L ++ AD+ +INTC SA+ +
Sbjct: 12 LVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIP-ADLCIINTCAVTASAESSGRHAVRQ 70
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
+ I++ +GCL E K+ L + + + K++++ E++F
Sbjct: 71 LCRQNPTAHIVV-TGCLGESDKEFFASLDRQCTLVSN------------KEKSRLIEKIF 117
Query: 127 LSE----HYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
+ + G S A++K+ +GCN CS+C IP +G+ SR + IL E+ +
Sbjct: 118 SYDTTFPEFKIHSFEGKS-RAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGV 176
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
+GY ++ + Y G++ L LI +D+ ++ RI + P T +L
Sbjct: 177 VDQGYREVVIAGINVGD--YCDGER-SLASLIEQVDRIPGIERIRISSIDPDDITEDLHR 233
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIVGH 301
AI SS + +Q S+S+LK+M R S+ L ++ + + +T +IVG
Sbjct: 234 AITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGF 293
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIAL 360
P E++ +FE+ +++ F +++ F FSA T AY+ + ++P + I R K L ++A
Sbjct: 294 PGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVAK 353
Query: 361 KHQNHSFKALLNKPIKALVENKEGE 385
+ L + + LVE G+
Sbjct: 354 RVGQKEMMKRLGETTEVLVEKVTGQ 378
>ref|NP_220797.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDB6|Y416_RICPR Hypothetical protein RP416
pir||G71699 hypothetical protein RP416 - Rickettsia prowazekii
emb|CAA14873.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 421
Score = 124 bits (311), Expect = 2e-27
Identities = 96/385 (24%), Positives = 184/385 (46%), Gaps = 16/385 (4%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
++ N + +++ GC N+ +SE++ L L N V + NTC +SA++++ Q
Sbjct: 6 MRNNLRQEIVTFGCRLNIYESEIIRKNLELSGLDN------VAIFNTCAVTKSAEKQARQ 59
Query: 63 TILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQ-F 121
I A K+ + I++ +GC S + ++ + EVD +G+ +K+ + +Q
Sbjct: 60 AIRKAKKNNPDLKIIV-TGC-SAQANPKMYGNMSEVDKV--IGNEEKLLSHYYQITDQKI 115
Query: 122 SEQVFLSEHYNARIITGS---SVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
S +S A + S A++++ GC+ C+FC IP +GK +S + +I+ +
Sbjct: 116 SVNDIMSVKETACHLVSSFDGKSRAFIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQ 175
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDK-QQALKSARILYLYPSSTT 237
V++L LKG+ ++ D +++ D Q+I+ + K LK R+ + +
Sbjct: 176 VKHLVLKGFKEVVITGVDVTAYGSDLPGSPTFAQMIKRVLKLVPELKRMRLSSIDIAEID 235
Query: 238 LELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-ESFIRST 296
EL I S +F + +Q D +LK+M+R ++A ++ ++ ++ E +
Sbjct: 236 DELFELIAYSERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPEVSFGAD 295
Query: 297 IIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALN 356
II G P E FE + E + L++F +S E T A + +VP+ R K L
Sbjct: 296 IIAGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAARMPQVPQNIRKERAKILR 355
Query: 357 KIALKHQNHSFKALLNKPIKALVEN 381
+ N FK + + ++ L+EN
Sbjct: 356 QDGFNQLNEFFKRHIGQKVELLIEN 380
>ref|NP_360883.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03784.1| (AE008671) unknown [Rickettsia conorii]
Length = 445
Score = 124 bits (311), Expect = 2e-27
Identities = 88/378 (23%), Positives = 178/378 (46%), Gaps = 21/378 (5%)
Query: 6 NKQLCLISLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQT 63
+K+L + + GC N+ DS M LY Y T + + ADVI++NTC E A +++
Sbjct: 2 SKKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSE 61
Query: 64 ILNAAKDK----KEG---AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAK 116
+ K + K+G AI++ +GC+++ +EI P VDI G Y + +I+K
Sbjct: 62 LGRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISK 121
Query: 117 KQNQFSEQVFLSEHYNARI------ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSR 170
+ L A+ + A++ + EGC++ C+FC +P +G SR
Sbjct: 122 VVRHEKHLIDLDFVEEAKFDQLPEQLYPQGTSAFISVQEGCDKFCTFCVVPYTRGAEFSR 181
Query: 171 ELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKD---GLIQLIRAIDKQQALKSAR 227
++ + +E + G ++ + Q+ +++ + KG D L L++ + + L+ R
Sbjct: 182 NVEQVYREALKVVSSGAKEIMLLGQNVNAY-HGKGPADKIFSLADLLKHLAQIPNLERLR 240
Query: 228 ILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ 287
+P +LI + P + +P+Q S+ +LK M R + ++ +++ +++
Sbjct: 241 YTTSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRLRE 300
Query: 288 VKESFIRST-IIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENT-HAYSLEKVPK 345
+ + S+ IVG P E + +FE+ + ++ + F +S T A +++P+
Sbjct: 301 ARPDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQIPE 360
Query: 346 KTINARIKALNKIALKHQ 363
+ R+ L + + Q
Sbjct: 361 HIKSERLTILQQELMAQQ 378
>ref|NP_300532.1| (NC_002491) hypothetical protein [Chlamydophila pneumoniae J138]
ref|NP_444827.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
sp|Q9Z874|Y477_CHLPN Hypothetical protein CPn0477/CP0277/CPj0477
pir||G81594 conserved hypothetical protein CP0277 [imported] - Chlamydophila
pneumoniae (strain AR39)
gb|AAF38135.1| (AE002186) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98683.1| (AP002546) hypothetical protein [Chlamydophila pneumoniae J138]
Length = 421
Score = 124 bits (311), Expect = 2e-27
Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 28/385 (7%)
Query: 11 LISLGCSKNLVDSEVMLGKL----YNYTLTNDAKSADVILINTCGFIESAKQESIQTILN 66
L+ LGC N + + +L Y L ++ AD+ +INTC SA+ +
Sbjct: 12 LVCLGCRVNQYEVQAYRDQLTILGYQEVLDSEIP-ADLCIINTCAVTASAESSGRHAVRQ 70
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
+ I++ +GCL E K+ L + + + K++++ E++F
Sbjct: 71 LCRQNPTAHIVV-TGCLGESDKEFFASLDRQCTLVSN------------KEKSRLIEKIF 117
Query: 127 LSE----HYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENL 182
+ + G S A++K+ +GCN CS+C IP +G+ SR + IL E+ +
Sbjct: 118 SYDTTFPEFKIHSFEGKS-RAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGV 176
Query: 183 ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
+GY ++ + Y G++ L LI +D+ ++ RI + P T +L
Sbjct: 177 VDQGYREVVIAGINVGD--YCDGER-SLASLIEQVDQIPGIERIRISSIDPDDITEDLHR 233
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIVGH 301
AI SS + +Q S+S+LK+M R S+ L ++ + + +T +IVG
Sbjct: 234 AITSSRHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGF 293
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIAL 360
P E++ +FE+ +++ F +++ F FSA T AY+ + ++P + I R K L ++A
Sbjct: 294 PGESDQDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVAK 353
Query: 361 KHQNHSFKALLNKPIKALVENKEGE 385
+ L + + LVE G+
Sbjct: 354 RVGQKEMMKRLGETTEVLVEKVTGQ 378
>ref|NP_240253.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57516|Y441_BUCAI Hypothetical protein BU441
dbj|BAB13139.1| (AP001119) hypothetical protein [Buchnera sp. APS]
Length = 439
Score = 124 bits (310), Expect = 3e-27
Identities = 88/347 (25%), Positives = 162/347 (46%), Gaps = 13/347 (3%)
Query: 7 KQLCLISLGCSKNLVDSEV---MLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K + + + GC N DS + +L K Y+LT A++AD++++NTC E A+++
Sbjct: 2 KYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFHQ 61
Query: 64 ILNAAKDKKEG--AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMI--AKKQN 119
+ K K I+ GC++ + EI + VDI G ++ MI +K+
Sbjct: 62 LGRWKKIKNNNPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKKR 121
Query: 120 QFSEQVFLSEHYNARIITGSSVHAY---VKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
+ S + + + Y + I EGCN+ CSFC +P +G SR D +L
Sbjct: 122 KLSIDISFPKLEKFKYFLAPKKKGYTADISIMEGCNKYCSFCVVPYTRGNEISRPCDDVL 181
Query: 177 KEVENLALKGYTDMTFIAQDSSSFLYD--KGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
E+ LA +G ++ + Q+ +++ G+ +LIR + + ++ R P
Sbjct: 182 FEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRFTTSNPL 241
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-I 293
T ++I + +P ++ +P+Q S+ +L M+R+ + + ++ + + I
Sbjct: 242 EFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQI 301
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL 340
S IVG P E+E +FE+ F+ FD F +SA T A ++
Sbjct: 302 SSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNM 348
>ref|NP_347917.1| (NC_003030) Fe-S oxidoreductases [Clostridium acetobutylicum]
gb|AAK79257.1|AE007641_3 (AE007641) Fe-S oxidoreductases [Clostridium acetobutylicum]
Length = 436
Score = 123 bits (309), Expect = 4e-27
Identities = 92/356 (25%), Positives = 172/356 (47%), Gaps = 16/356 (4%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ I+LGC N +SE M K + + ++ + AD +INTC ++S Q I
Sbjct: 2 KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGV---GDYDKIDIMIAKKQNQFS 122
A K K+ A++ A GC S+ +++ E I VDI G GD +++NQ
Sbjct: 62 RARKANKD-AVIAAVGCYSQVEPEKVAE-IEGVDIVLGTKNKGDIIHYVNKFIEERNQIV 119
Query: 123 --EQVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ VF + + I A++KI +GCN+ CS+C IP +G + S+ + ++ E
Sbjct: 120 NVKDVFTDKKFEDLNIDEYQDKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGE 179
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
++ LA G+ ++ +S+ D LI +I ++ ++ RI + P
Sbjct: 180 IKRLAEHGFKEIILSGIHIASYGDDLKGDWNLISIIEKAEQIDGIERIRIGSIEPRFFDE 239
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
+ I I++ +F + +Q L++M R + + +++ +++ + + I + +
Sbjct: 240 DTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDV 299
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIK 353
IVG P E + EFE+ FL E + ++++F +S E T A ++ K IN +K
Sbjct: 300 IVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAM----KNQINGNVK 351
>gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum]
Length = 386
Score = 123 bits (309), Expect = 4e-27
Identities = 92/356 (25%), Positives = 172/356 (47%), Gaps = 16/356 (4%)
Query: 8 QLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTIL 65
++ I+LGC N +SE M K + + ++ + AD +INTC ++S Q I
Sbjct: 2 KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61
Query: 66 NAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGV---GDYDKIDIMIAKKQNQFS 122
A K K+ A++ A GC S+ +++ E I VDI G GD +++NQ
Sbjct: 62 RARKANKD-AVIAAVGCYSQVEPEKVAE-IEGVDIVLGTKNKGDIIHYVNKFIEERNQIV 119
Query: 123 --EQVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKE 178
+ VF + + I A++KI +GCN+ CS+C IP +G + S+ + ++ E
Sbjct: 120 NVKDVFTDKKFEDLNIDEYQDKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGE 179
Query: 179 VENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
++ LA G+ ++ +S+ D LI +I ++ ++ RI + P
Sbjct: 180 IKRLAEHGFKEIILSGIHIASYGDDLKGDWNLISIIEKAEQIDGIERIRIGSIEPRFFDE 239
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
+ I I++ +F + +Q L++M R + + +++ +++ + + I + +
Sbjct: 240 DTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDV 299
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIK 353
IVG P E + EFE+ FL E + ++++F +S E T A ++ K IN +K
Sbjct: 300 IVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAM----KNQINGNVK 351
>ref|NP_294874.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||H75431 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10722.1|AE001964_6 (AE001964) conserved hypothetical protein [Deinococcus radiodurans]
Length = 505
Score = 122 bits (307), Expect = 6e-27
Identities = 81/355 (22%), Positives = 167/355 (46%), Gaps = 12/355 (3%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNY--TLTNDAKSADVILINTCGFIESAKQESIQTILNAA 68
LI+ GC N D+ ++ +L ++ + AD +L+NTC + + ++++L
Sbjct: 51 LITYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCA-VRGKPVDKVRSLLGDL 109
Query: 69 KDKKEGAILIAS--GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
+ +K L+ GCL++ + + EVD+ G G I + + + Q
Sbjct: 110 RKQKAQRSLVVGMMGCLAQLEEGQQIARKFEVDVLLGPGSLLDIGAALESNERFWGLQFK 169
Query: 127 LSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKG 186
H + + A++ I GC+ C++C +P+ +G SR D IL+E++ G
Sbjct: 170 DELHDHIPPPPSGKLQAHLTIMRGCDHHCTYCIVPTTRGPQVSRHPDDILRELDMQLAAG 229
Query: 187 YTDMTFIAQDSSSFLYDKGQK----DGLIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
++T + Q+ +++ D+G K L+R + ++ + +P + T ++
Sbjct: 230 VREVTLLGQNVNAYGVDQGAKLKGYPSFADLLRMVG-ASGIERVKFTTSHPMNFTEDVAA 288
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHL-KLLDAMKQVKESFIRSTIIVGH 301
AI +P + +P+Q SD +L++M R ++ +L + K + + + + IIVG
Sbjct: 289 AIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQIKKHIPDVVLATDIIVGF 348
Query: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS-LEKVPKKTINARIKAL 355
P E E +F++ + DE +D +F +S T +Y + +P++ R++ L
Sbjct: 349 PGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPRELKTERLQRL 403
>ref|NP_438192.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|Q57163|YLEA_HAEIN Hypothetical protein HI0019
pir||D64140 conserved hypothetical protein HI0019 - Haemophilus influenzae
gb|AAC21697.1| (U32687) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 474
Score = 122 bits (306), Expect = 8e-27
Identities = 96/388 (24%), Positives = 173/388 (43%), Gaps = 14/388 (3%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKL---YNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
++L + + GC N DS M L + LT + ADV+L+NTC E A+++
Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 64 ILNAAKDKKEGAILI--ASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ + KK L+ GC++ + + I+ P VDI G ++ MI + +
Sbjct: 63 LGRWKELKKNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQIRGGK 122
Query: 122 SEQVFLSEHYNARIIT-----GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSIL 176
S V +S + A+V I EGCN+ C+FC +P +G+ SR +D +L
Sbjct: 123 SSVVDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPVDDVL 182
Query: 177 KEVENLALKGYTDMTFIAQDSSSFL--YDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
E+ LA +G ++ + Q+ +++ GQ +L+R + + R +P
Sbjct: 183 FEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDRLRFTTSHPI 242
Query: 235 STTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-I 293
T ++I +P ++ +P+Q SD +L M+R + + ++ ++ V+ I
Sbjct: 243 EFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKLRAVRPDIQI 302
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINARI 352
S IVG P E +FE+ + + FD F +SA T A + + V + R+
Sbjct: 303 SSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDVTEDEKKQRL 362
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVE 380
L + + + +L + LVE
Sbjct: 363 YVLQERINQQAAQFSRRMLGTEQRVLVE 390
>ref|NP_518652.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14059.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 457
Score = 122 bits (306), Expect = 8e-27
Identities = 90/366 (24%), Positives = 170/366 (45%), Gaps = 19/366 (5%)
Query: 7 KQLCLISLGCSKNLVDSEVM---LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQT 63
K++ + + GC N DS+ M L T+ + ADVIL NTC E A+++
Sbjct: 2 KKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFSD 61
Query: 64 I--LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF 121
+ + A K + ++ GC++ + I P VD+ G ++ +I ++
Sbjct: 62 LGRVKALKARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDARRRTG 121
Query: 122 SEQVFLS-------EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
QV +S +H + G S A+V I EGC++ CS+C +P +G+ SR +
Sbjct: 122 RPQVDVSFPEIEKFDHLPPARVEGPS--AFVSIMEGCSKYCSYCVVPYTRGEEVSRPFED 179
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKG---QKDGLIQLIRAIDKQQALKSARILYL 231
+L EV LA +G ++T + Q+ ++++ G ++ L+ + + ++ R
Sbjct: 180 VLAEVAGLAEQGVREVTLLGQNVNAYIGKMGGTSERADFALLLEYVAEIPGIERIRYTTS 239
Query: 232 YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
+P T LI A ++ ++ +P+QH SD +L M+R + + ++ ++ ++
Sbjct: 240 HPKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRKLRAIRPD 299
Query: 292 F-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTIN 349
I + IVG P E +++F + + E +D F +S T A +L + P
Sbjct: 300 ISIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDDTPHAVKL 359
Query: 350 ARIKAL 355
R+K L
Sbjct: 360 ERLKHL 365
>ref|NP_650002.1| (NM_141745) CG6345 gene product [Drosophila melanogaster]
gb|AAF54531.1| (AE003687) CG6345 gene product [Drosophila melanogaster]
gb|AAL48716.1| (AY071094) RE15838p [Drosophila melanogaster]
Length = 583
Score = 122 bits (305), Expect = 1e-26
Identities = 104/443 (23%), Positives = 197/443 (43%), Gaps = 50/443 (11%)
Query: 15 GCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQ------ESIQTILN 66
GC N D+EV+ K Y + + ADVI++ TC + A+Q + ++ + N
Sbjct: 100 GCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKHLRAMKN 159
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV- 125
++ L GC++ER K+++ E VD+ G Y + ++A ++ + +
Sbjct: 160 KRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRHYGNSAIN 219
Query: 126 ---FLSEHYNARI---ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
L E Y + + S A+V I GC+ C++C +P +G+ +SR L SI+ EV
Sbjct: 220 VLLSLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRPLASIVAEV 279
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKD-----------------------GLIQLIRA 216
+ LA +G ++T + Q+ +S+ Q++ L+R+
Sbjct: 280 KALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKTGGTPFAALLRS 339
Query: 217 IDKQQALKSARILYL--YPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSS 274
+ QA+ RI + +P + E++ I P +P Q + +L++MRR S
Sbjct: 340 V--AQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLERMRRGYS 397
Query: 275 QAHHLKLLDAMKQVKESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEE 333
+ +L+L+ ++Q + + S I G E E EF++ + + + Q++ +FA+S E
Sbjct: 398 REAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLFAYSMRE 457
Query: 334 NTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKAR 391
T A+ K VP N R++ + ++ + + + + L+E K K
Sbjct: 458 KTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEGKS-----KRS 512
Query: 392 DLRWAPEVDGEILINDSELTTPL 414
D W D I + + P+
Sbjct: 513 DAHWFGRNDANIKVIVPSIYVPI 535
>ref|NP_360217.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03118.1| (AE008618) unknown [Rickettsia conorii]
Length = 421
Score = 121 bits (303), Expect = 2e-26
Identities = 97/389 (24%), Positives = 183/389 (46%), Gaps = 24/389 (6%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
V N + +++ GC N+ +SE++ L + N V + NTC ++A++++ Q
Sbjct: 6 VSNNLRQNVVTFGCRLNIYESEIIRKNLELSGIDN------VAIFNTCAVTKAAEKQARQ 59
Query: 63 TILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-----DIMIAKK 117
I A K+ + I++ +GC S + ++ +PEVD +G+ +K+ I AK
Sbjct: 60 AIRRAKKNNPDLKIIV-TGC-SAQTSPQMYGNMPEVDKV--IGNEEKLLPNYYQITDAK- 114
Query: 118 QNQFSEQVFLSEHYNARIITGS---SVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
+ +S A + S A++++ GC+ C+FC IP +GK +S + +
Sbjct: 115 ---ITVNDIMSVKETASHLVSSFDCKSRAFIQVQNGCDHFCTFCIIPYGRGKSRSVAIGA 171
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLI-RAIDKQQALKSARILYLYP 233
I ++V++L L G+ ++ F D +++ D Q+I R ++ LK R+ +
Sbjct: 172 IAEQVKHLVLNGFKEVVFTGVDVTAYGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSIDV 231
Query: 234 SSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-ESF 292
+ EL I S +F + +Q D +LK+M+R ++A+ ++ ++ ++ E
Sbjct: 232 AEIDDELFELIAYSERIMPHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPEVS 291
Query: 293 IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARI 352
+ II G P E FE + E + L++F +S E T A + +VPK R
Sbjct: 292 FGADIIAGFPTETPEMFENTRKLISEAELQYLHVFPYSEREGTPAARMPQVPKNIRKERA 351
Query: 353 KALNKIALKHQNHSFKALLNKPIKALVEN 381
L + FK + + ++ LVEN
Sbjct: 352 AILRQEGQNQLTEFFKKHIGQKVELLVEN 380
>ref|NP_105219.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51005.1| (AP003003) hypothetical protein [Mesorhizobium loti]
Length = 446
Score = 120 bits (302), Expect = 2e-26
Identities = 90/367 (24%), Positives = 180/367 (48%), Gaps = 22/367 (5%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+++ GC N +SEVM + + L A ++ NTC A +++ Q I A +D
Sbjct: 24 VVTFGCRLNTYESEVMRREAESAGL--GALQGGAVIFNTCAVTGEAVRQARQAIRKARRD 81
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQF----SEQVF 126
GA +I +GC ++ ++ + EVD+ +G+ +K+ + F +E+
Sbjct: 82 NP-GARIIVTGCAAQTEPEKFAAM-DEVDLV--LGNEEKLKANSYRALPDFGVNDTEKAR 137
Query: 127 LSEHYNARIITGSSV-------HAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+++ ++ R G V A+V++ GC+ +C+FC IP +G +S + +++++V
Sbjct: 138 VNDIFSVRETAGHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVEQV 197
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQ-QALKSARILYLYPSSTTL 238
+ LA GY ++ D +SF D L +L++ I KQ +K R+ +
Sbjct: 198 KRLAGNGYAEIVLTGVDMTSFGADLPGAPKLGRLVKTILKQVPDVKRLRLSSIDSIEADD 257
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-ESFIRSTI 297
+L+ AI + P + + +Q D +LK+M+R + ++ + +++++ E + I
Sbjct: 258 DLLDAIATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIRFCEDVRKLRPEIVFGADI 317
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTIN---ARIKA 354
I G P E ++ FE ++E L++F FS E T A + +V ++ + AR++A
Sbjct: 318 IAGFPTETDAMFENSIKIVEECGLTHLHVFPFSPREGTPAARMPQVRREVVKQRAARLRA 377
Query: 355 LNKIALK 361
+ A +
Sbjct: 378 AGEAAYR 384
>ref|NP_540893.1| (NC_003317) MIAB PROTEIN [Brucella melitensis]
gb|AAL53157.1| (AE009631) MIAB PROTEIN [Brucella melitensis]
Length = 467
Score = 119 bits (298), Expect = 7e-26
Identities = 98/391 (25%), Positives = 180/391 (45%), Gaps = 29/391 (7%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAK--- 69
GC N+ DS+ M L Y T+ AD++L+NTC E A ++ + K
Sbjct: 31 GCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSALGRLRKMKD 90
Query: 70 ----DKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV 125
D KE I +A GC+++ EI P VD+ G Y ++ +A+ + E+V
Sbjct: 91 ARAADGKELTIGVA-GCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVRG--GEKV 147
Query: 126 FLS--------EHYNA---RIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
+ EH A V A++ + EGC++ C+FC +P +G SR +
Sbjct: 148 VETDYAIEDKFEHLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSEVSRSVKQ 207
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSF--LYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
I+ E E LA G ++T + Q+ +++ + G++ GL +L+ + + + R +
Sbjct: 208 IVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIAHLRYTTSH 267
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-ES 291
P LI A Y +P+Q SD +LK M R +L+L++ ++ V+ +
Sbjct: 268 PRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERIRNVRPDM 327
Query: 292 FIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSL-EKVPKKTINA 350
+ IVG P E + +FE+ + + + + F +S T L + V + +
Sbjct: 328 ALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHVEEAVKDE 387
Query: 351 RIKALNKIALKHQNHSFK-ALLNKPIKALVE 380
R++ L + L Q ++F+ +++ + + L+E
Sbjct: 388 RLQRLQAL-LSAQQYAFQDSMIGRKMDVLLE 417
>ref|NP_195357.1| (NM_119802) putative protein [Arabidopsis thaliana]
emb|CAB16849.1| (Z99708) putative protein [Arabidopsis thaliana]
emb|CAB80305.1| (AL161589) putative protein [Arabidopsis thaliana]
Length = 587
Score = 118 bits (295), Expect = 2e-25
Identities = 95/389 (24%), Positives = 175/389 (44%), Gaps = 48/389 (12%)
Query: 15 GCSKNLVDSEVMLGKLYNY---TLTNDAKSADVILINTCGFIESAKQESIQTI------- 64
GC N+ D E++L + N + D +SA+VI +NTC E+A+Q Q +
Sbjct: 84 GCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRLNYFWFLK 143
Query: 65 ----LNAAKDKKEGAI---LIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK 117
+NAA + + ++ GC++ER KD+I + VD+ G Y + ++ +
Sbjct: 144 REWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEV 203
Query: 118 ---QNQFSEQVFLSEHY---NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRE 171
Q + + L E Y + I+ +S+ A+V + GCN C+FC +P +G+ +SR
Sbjct: 204 DYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRP 263
Query: 172 LDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDG---------------------- 209
++SI++EV L G ++T + Q+ +S+ D ++
Sbjct: 264 VESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLR 323
Query: 210 LIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P EL+ + N +P Q + +L++M
Sbjct: 324 FADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQM 383
Query: 270 RRNSSQAHHLKLLDAMKQV-KESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR ++ +L L+ ++ + + I S I G E E E +E + + +D +FA
Sbjct: 384 RRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRAVGYDMAYMFA 443
Query: 329 FSAEENTHAYS--LEKVPKKTINARIKAL 355
+S E THA+ + VP++ R+ L
Sbjct: 444 YSMREKTHAHRNYTDDVPEEVKQRRLTEL 472
>ref|NP_422478.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25646.1| (AE006026) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 443
Score = 116 bits (290), Expect = 6e-25
Identities = 87/374 (23%), Positives = 167/374 (44%), Gaps = 12/374 (3%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+++ GC N +SE M + L+ D ++ NTC A +++ Q I A ++
Sbjct: 35 VVTFGCRLNAYESEAMRARASADGLS------DAVVFNTCAVTNEAVRQARQAIRKARRE 88
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ GA +I +GC ++ +PEVD+ G + + + +
Sbjct: 89 RP-GARIIVTGCAAQ-VDPAAFAAMPEVDLVLGNAEKAAPGALTDTSTRVRVNDIMSIKE 146
Query: 131 YNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYT 188
+I G AYV++ GC+ +C+FC IP +G +S ++++V LA +GY
Sbjct: 147 TAGHLIDGLKDRARAYVEVQNGCDHRCTFCIIPYGRGNSRSAPAGEVVEQVRKLAAEGYR 206
Query: 189 DMTFIAQDSSSFLYDKGQKDGLIQLI-RAIDKQQALKSARILYLYPSSTTLELIGAIESS 247
++ D +S+ D + L QL+ R + L R+ + + +L +E+
Sbjct: 207 EVVLTGVDVTSWGADLPGQPTLGQLVGRILRMVPDLPRLRLSSIDAAEIDPDLFKLLETE 266
Query: 248 PIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVK-ESFIRSTIIVGHPEENE 306
P Y + +Q + +LK+M+R S+ LKL+ +++V+ ++ + +I G P E +
Sbjct: 267 PRLMPYLHLSLQAGDNLILKRMKRRHSREDALKLVAEVRRVRPDTAFGADLIAGFPTETD 326
Query: 307 SEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNHS 366
FE ++E L++F +SA T A + V I R + L + +
Sbjct: 327 EAFENTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVKGPVIKDRARRLREAGQRGLERH 386
Query: 367 FKALLNKPIKALVE 380
+ + + + LVE
Sbjct: 387 LQRQVGRVLSGLVE 400
>ref|NP_616094.1| (NC_003552) 2-methylthioadenine synthase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04574.1| (AE010782) 2-methylthioadenine synthase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 435
Score = 115 bits (287), Expect = 1e-24
Identities = 107/436 (24%), Positives = 201/436 (45%), Gaps = 51/436 (11%)
Query: 11 LISLGCSKNLVDSEVMLGKL--YNYTLTNDAKS--ADVILINTCGFIESAKQESIQTILN 66
L S GCS +L +E+M + + L N A + A+V + N+C + +Q+ + I +
Sbjct: 5 LESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKIRS 64
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
+ +G +I SGC+ E +EI PE I GV ++ +++ + + E +
Sbjct: 65 MGE---KGVQVIVSGCMPEVQLEEILHANPEAHIL-GVNAISRLGELLSSIEQRRMEGLP 120
Query: 127 LSEHYNARII------------TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
H R + ++H +IS+GCN CS+C + +GKL+S +
Sbjct: 121 AGGHLELRTSEPLGFLNVPRERSNPNIHI-CQISQGCNFACSYCIVKHARGKLRSFPPEK 179
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
I+K++ + G ++ +QD S + D G K L +L+R I + R+ + P
Sbjct: 180 IVKDIRSAVADGCREIWLTSQDDSQYGMDTGVK--LPELLRMISEIPGDFKVRVGMMNPF 237
Query: 235 STTL---ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
S L+ A +S +F+ +PIQ S S+LKKM R L +DA+ ++
Sbjct: 238 SVLPILDGLVDAFDSDKVFK-LLHLPIQSASHSVLKKMNR-------LHKMDAVDEIITK 289
Query: 292 F--------IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKV 343
F + + IIVG +E + +FEE ++ +++ +++NI +S +T A+S +
Sbjct: 290 FRARFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNL 349
Query: 344 PKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEI 403
+ R L+K+ + + S + ++ + V + + D+ + +
Sbjct: 350 DSRISVQRSHELHKVCEQIKLGSKQEMIGWKGRVFVSK-----YTEIGDVLTRTDAYRPV 404
Query: 404 LINDSELTTPLKPGHY 419
+I+ S+ LKPG Y
Sbjct: 405 VISGSD----LKPGEY 416
>ref|NP_343738.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK42528.1| (AE006839) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 421
Score = 114 bits (284), Expect = 3e-24
Identities = 92/363 (25%), Positives = 167/363 (45%), Gaps = 24/363 (6%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
K + + + GC+ N D+ VM+ L + Y + ++AD+I++NTC ++ Q I
Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 65 --LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFS 122
LN K L+ +GC+S + + P + G ++I + I K +
Sbjct: 62 KELNTLSKK-----LVVAGCMSSAEPATVLSIAPNASLI-GPQSVERI-VDIVKSE---- 110
Query: 123 EQVFLSEHYNARII--TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
E+ + E A I T A + +++GC CSFC + KL+S L I+
Sbjct: 111 ERKIVIEGDRALITPRTFDGKIAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAAR 170
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL-- 238
+ G ++ QD++++ D G L+ ++ + RI + P
Sbjct: 171 DAIQSGAREIELTGQDTAAYGLDLGGSISLVDVVNKVADIDGDFMIRIGMMTPEQAMRIM 230
Query: 239 -ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST- 296
+LI AI + +++ + +P+Q D +LK M R + + +L+ ++ K F+ T
Sbjct: 231 DDLIEAIRNPKVYK-FIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRH-KIPFVNITT 288
Query: 297 -IIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKAL 355
IIVGHP E+E F + E +F+R+++ +S NT + S+ +VP RI+
Sbjct: 289 DIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIA 348
Query: 356 NKI 358
NK+
Sbjct: 349 NKL 351
>ref|NP_376401.1| (NC_003106) 418aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65510.1| (AP000982) 418aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 418
Score = 114 bits (284), Expect = 3e-24
Identities = 93/354 (26%), Positives = 170/354 (47%), Gaps = 24/354 (6%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC+ N DS +M+ L + + + + ADVI++NTC ++ Q I KK
Sbjct: 9 GCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKEL---KK 65
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKI-DIMIAKKQNQFSEQVFLSEHY 131
G LI +GCL + L PE I G DKI + + + K+ F E+ E
Sbjct: 66 IGKKLIIAGCLVSSQPALVMSLAPESSI-VGAQSIDKIVEAVESNKRGIFLEES--KELV 122
Query: 132 NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMT 191
RI G + + I++GC C+FC + KL+S +I+ V+ KG ++
Sbjct: 123 TPRIFEGKI--SIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGAVEIE 180
Query: 192 FIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL---ELIGAIESSP 248
AQD++++ D L++L++ I + + RI + P E++ I+
Sbjct: 181 LTAQDTAAYGLDINYN--LVELLKEILEIEGNYMIRIGMMTPELAFKQIDEILEIIKDKR 238
Query: 249 IFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF----IRSTIIVGHPEE 304
+++ + +P+Q D +LK M R + + +L+ K++++ I + II+GHP E
Sbjct: 239 VYK-FLHLPVQSGDDRVLKLMNRKYTVDEYRELV---KEIRDKIPIVNITTDIIIGHPGE 294
Query: 305 NESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKI 358
++ F+ + E +F+R+++ +S NT + S+ +VP R+K N++
Sbjct: 295 DDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMKIANEV 348
>ref|NP_662869.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM73211.1| (AE012950) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 444
Score = 113 bits (282), Expect = 5e-24
Identities = 87/384 (22%), Positives = 178/384 (45%), Gaps = 21/384 (5%)
Query: 13 SLGCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQE--SIQTILNAA 68
+ GC N DSE++ L + + D +AD++L+N+C E+A++ +I L
Sbjct: 16 TFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGNILMHLKGR 75
Query: 69 KDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFL- 127
K + + ++ GC+ + ++ + P VD G +Y ++ ++A + + L
Sbjct: 76 KRRCKELVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVAGLREAVARPALLD 135
Query: 128 ---SEHY-NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+E Y + S+ A++ + GCN C+FC +P +G+ +S + ++ EV L
Sbjct: 136 YDQTETYAGIEPVRAGSISAFLPVMRGCNNHCAFCVVPVTRGRERSVGFERVVAEVVALE 195
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKD--GLIQLIRAIDKQQALKSARILYL--YPSSTTLE 239
G+ ++T + Q+ +S+ + D GL++ + A+ S RI + +P +
Sbjct: 196 KAGFREVTLLGQNVNSWRDAEKGLDFAGLLEGV-----SLAVPSMRIRFTTSHPKDISEA 250
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTII 298
L+ I + P N+ +P+Q S ML M+R ++ +L + ++ + E I + +I
Sbjct: 251 LVKVIAARPNLCNHIHLPVQSGSSRMLDLMKRGHTREEYLDRIAMIRSYIPEVAITTDLI 310
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYS--LEKVPKKTINARIKALN 356
G E E + E + ++ +D +F +S T A + VP AR++ +
Sbjct: 311 AGFCTETEKDHRETLSLMEAVGYDTAFMFHYSVRPGTWAARNLPDDVPDTVKKARLQEII 370
Query: 357 KIALKHQNHSFKALLNKPIKALVE 380
++ F+ + K ++ L E
Sbjct: 371 ELQNAISREIFQREIGKTVEVLAE 394
>ref|NP_498290.1| (NM_065889) F25B5.5.p [Caenorhabditis elegans]
sp|Q09316|YQT5_CAEEL Hypothetical 61.3 kDa protein F25B5.5 in chromosome III
pir||T16145 hypothetical protein F25B5.5 - Caenorhabditis elegans
gb|AAC46526.1| (U23172) Hypothetical protein F25B5.5 [Caenorhabditis elegans]
Length = 547
Score = 112 bits (280), Expect = 9e-24
Identities = 100/454 (22%), Positives = 198/454 (43%), Gaps = 49/454 (10%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+ +C ++ GC N+ D E++ + Y + ++ ++AD++L+ TC + A+++ +
Sbjct: 79 RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138
Query: 65 -LNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKK---QNQ 120
L + +G I+ GC++ER + ++ E V+I G Y + ++A N
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNG 198
Query: 121 FSEQVFLSEHY---NARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILK 177
+ Q+ L E Y + +S A++ I GC+ C++C +P +G+ +SR ++SI++
Sbjct: 199 INVQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVE 258
Query: 178 EVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSA----------- 226
EV+ L +GY +T + Q+ +S+ + D+ K+
Sbjct: 259 EVQRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFT 318
Query: 227 ---------------RILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRR 271
R +P ++LI I S P +P Q D L++M R
Sbjct: 319 TLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMER 378
Query: 272 NSSQAHHLKLLDAMKQVKESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFS 330
++ +L+L+D ++ V S + S I G E E + + + ++ +F +S
Sbjct: 379 GYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFPYS 438
Query: 331 AEENTHAYS--LEKVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFY 388
T A+ + VP+ R L + + +AL+ L+E K
Sbjct: 439 MRGKTRAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGK------ 492
Query: 389 KARDLRWA-PEVDGEI--LINDSELTTPLKPGHY 419
RD ++ +DG + + ++S+L L+PG Y
Sbjct: 493 SKRDASFSHGRIDGGVKAVFDNSKLC--LEPGQY 524
>ref|NP_565035.1| (NM_105867) expressed protein [Arabidopsis thaliana]
gb|AAG51137.1|AC069273_8 (AC069273) unknown protein [Arabidopsis thaliana]
gb|AAK56263.1|AF367274_1 (AF367274) At1g72090/F28P5_4 [Arabidopsis thaliana]
Length = 601
Score = 112 bits (279), Expect = 1e-23
Identities = 88/369 (23%), Positives = 178/369 (47%), Gaps = 19/369 (5%)
Query: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQ 58
M++ + + + + GCS N DSE M G+L + Y LT + AD+ LINTC ++S Q
Sbjct: 58 MKIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCT-VKSPSQ 116
Query: 59 ESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
++ T++ + K+ L+ +GC+ + +D +KEL E GV D++ ++ +
Sbjct: 117 SAMSTLITRGRSGKKP--LVIAGCVPQGSRD-LKEL--EGVSVVGVQQIDRVVEIVEETL 171
Query: 119 NQFSEQVFLSEHYNARIITGSSVHAYVKI---SEGCNQKCSFCAIPSFKGKLQSRELDSI 175
++ + A + + +++I + GC C++C +G L S +DS+
Sbjct: 172 KGHEVRLLTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSL 231
Query: 176 LKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSS 235
++ V + +G ++ ++D+ ++ D G L L+ AI K+ + +L + ++
Sbjct: 232 VERVRTVISEGVKEIWLSSEDTGAYGRDIGV--NLPILLNAIVKELPSDQSTMLRIGMTN 289
Query: 236 TT-----LELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKE 290
L+ I A+ P + +P+Q SDS+L M R + + ++D + ++
Sbjct: 290 PPFILEHLKEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVP 349
Query: 291 SF-IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTIN 349
I + II G P E + +F + + +++F +++I F T A ++KV K +
Sbjct: 350 GMQIATDIICGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVK 409
Query: 350 ARIKALNKI 358
R + L +
Sbjct: 410 QRSRELTSV 418
>emb|CAC15883.2| (AL355392) dJ1187J4.4 (CGI-05 protein (LOC51654) similar to rat
CDK5 activator-binding protein) [Homo sapiens]
Length = 548
Score = 112 bits (279), Expect = 1e-23
Identities = 112/451 (24%), Positives = 205/451 (44%), Gaps = 43/451 (9%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 61 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 120
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L A K ++ + + GC++ER K+EI VDI G Y + ++A +
Sbjct: 121 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 180
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 181 SGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPI 240
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
SIL+EV+ L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 241 ASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLR 300
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L+ M
Sbjct: 301 FAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAM 360
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ +++L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 361 RRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFA 420
Query: 329 FSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEY 386
+S + T AY K VP++ R++ L I + + + + LV EG
Sbjct: 421 YSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLV---EGLS 477
Query: 387 FYKARDLRWAPEVDGEILINDSELTTPLKPG 417
A DL + + +++ D+E+ PG
Sbjct: 478 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPG 508
>ref|XP_015893.2| (XM_015893) similar to hypothetical protein HSPC167; hypothetical
protein; CGI-05 protein [Homo sapiens]
Length = 587
Score = 112 bits (279), Expect = 1e-23
Identities = 112/451 (24%), Positives = 205/451 (44%), Gaps = 43/451 (9%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L A K ++ + + GC++ER K+EI VDI G Y + ++A +
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPI 279
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
SIL+EV+ L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 280 ASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLR 339
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L+ M
Sbjct: 340 FAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAM 399
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ +++L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 400 RRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFA 459
Query: 329 FSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEY 386
+S + T AY K VP++ R++ L I + + + + LV EG
Sbjct: 460 YSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLV---EGLS 516
Query: 387 FYKARDLRWAPEVDGEILINDSELTTPLKPG 417
A DL + + +++ D+E+ PG
Sbjct: 517 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPG 547
>ref|NP_634206.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM31878.1| (AE013458) hypothetical protein [Methanosarcina mazei Goe1]
Length = 435
Score = 111 bits (278), Expect = 1e-23
Identities = 96/375 (25%), Positives = 179/375 (47%), Gaps = 42/375 (11%)
Query: 11 LISLGCSKNLVDSEVM---LGKLYNYTLT-NDAKSADVILINTCGFIESAKQESIQTILN 66
L S GCS + +E+M +GKL + L+ +A A+V + N+C + +Q+ + I +
Sbjct: 5 LESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKIRS 64
Query: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVF 126
+ +G +I SGC+ E ++I PE I GV ++ +++ + + +
Sbjct: 65 MGE---KGVQVIVSGCMPEVQLEDILHANPEAHIL-GVNAVSRLGDLLSTIEQRKKTGIP 120
Query: 127 LSEHYNARII------------TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDS 174
E R + ++H +IS+GCN CS+C + +GKL S +
Sbjct: 121 GGERLEIRTSEPQGFLNVPRERSNPNIHI-CQISQGCNFACSYCIVKHARGKLLSFPPEE 179
Query: 175 ILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPS 234
I++++ + G ++ +QD S + D G K L +L+RAI + R+ + P
Sbjct: 180 IIEDIRSAVADGCREIWLTSQDDSQYGMDTGVK--LPELLRAISEIPGDFKVRVGMMNPF 237
Query: 235 STTL---ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKES 291
S +L+ A +S IF+ +PIQ S S+LKKM R L +D++ ++
Sbjct: 238 SVLPILDDLVDAFDSDKIFK-LLHLPIQSASHSVLKKMNR-------LHKMDSVDEIITK 289
Query: 292 F--------IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKV 343
F + + IIVG +E + +FEE ++ +++ +++NI +S +T A+S +
Sbjct: 290 FRAHFEDLSLFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNL 349
Query: 344 PKKTINARIKALNKI 358
+ R L+K+
Sbjct: 350 DSRISVKRSHQLHKV 364
>ref|NP_275963.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
sp|O26914|Y826_METTH Hypothetical protein MTH826
pir||B69210 conserved hypothetical protein MTH826 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85324.1| (AE000860) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 424
Score = 111 bits (278), Expect = 1e-23
Identities = 85/357 (23%), Positives = 168/357 (46%), Gaps = 13/357 (3%)
Query: 13 SLGCSKNLVDSEVMLGKLYNY-TLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDK 71
+ GC+ N DSE+M G L + ADVI+INTC + + I I +
Sbjct: 10 TFGCTFNQADSEIMAGVLREEGAVLTGIDDADVIIINTCYVKHPTEHKVINRIKKIQETY 69
Query: 72 KEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQV--FLSE 129
E +++A GC+ E +++ + + + G + + N E++ F S+
Sbjct: 70 PEKGLVVA-GCMVEIDPSKLEAISGDAS-WLGPHQLRRAPQAVRAASNGLVERITGFTSD 127
Query: 130 HYNA--RIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGY 187
R+ + +H + I EGCN CS+C +G++QS D I+ E G
Sbjct: 128 VKVKVPRVRSNPLIHI-IPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAVASGC 186
Query: 188 TDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIES- 246
++ AQD++++ D G+K L +I+ I R+ ++P+S +L G +E+
Sbjct: 187 REIQLTAQDTAAYGVDTGEK--LSDIIKGISGIPGNFRIRVGMMHPASVLRDLDGLVEAF 244
Query: 247 -SPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHPEE 304
S ++ +P+Q SDS+L M R + +++ + ++ + I + IIVG+P E
Sbjct: 245 KSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIVGYPTE 304
Query: 305 NESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALK 361
+F + + L+E + +++ + + SL+++ + + R +AL ++ ++
Sbjct: 305 EREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALEELKMR 361
>dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sapiens]
Length = 587
Score = 111 bits (278), Expect = 1e-23
Identities = 112/451 (24%), Positives = 205/451 (44%), Gaps = 43/451 (9%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L A K ++ + + GC++ER K+EI VDI G Y + ++A +
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPI 279
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
SIL+EV+ L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 280 ASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGLR 339
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L+ M
Sbjct: 340 FAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAM 399
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ +++L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 400 RRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREAQYNMGFLFA 459
Query: 329 FSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEY 386
+S + T AY K VP++ R++ L I + + + + LV EG
Sbjct: 460 YSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLV---EGLS 516
Query: 387 FYKARDLRWAPEVDGEILINDSELTTPLKPG 417
A DL + + +++ D+E+ PG
Sbjct: 517 KRSATDLCGRNDGNLKVIFPDAEMEDVNNPG 547
>ref|NP_533359.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL43675.1| (AE009215) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 424
Score = 110 bits (275), Expect = 3e-23
Identities = 84/384 (21%), Positives = 169/384 (43%), Gaps = 23/384 (5%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+I+ GC N +SEVM + L N +L+NTC A +++ Q I A +D
Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLNN------AVLVNTCAVTGEAVRQARQAIRRARRD 59
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFS----EQVF 126
I++ +GC ++ K ++ PEVD +G+ +K+ + F E++
Sbjct: 60 NPHARIIV-TGCAAQTEKQTFADM-PEVDAV--LGNEEKLKSASYRALPDFGVSAEEKLR 115
Query: 127 LSEHYNARIIT-------GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+++ + + V A++++ GC+ +C+FC IP +G +S + +++ +
Sbjct: 116 VNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQA 175
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQ-QALKSARILYLYPSSTTL 238
L GY ++ D++S+ D + L L + + KQ + R+ +
Sbjct: 176 RRLTESGYCEIVLTGVDATSYGADLPGEPSLGYLAKTLLKQVPDIIRLRLSSIDSIEADH 235
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTI 297
L+ I P F + + +QH D +LK+M+R +A ++ + ++ ++ + +
Sbjct: 236 HLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSLRPDIAFGADM 295
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNK 357
I G P E E E + +E L++F +S E T A + ++ + + R L
Sbjct: 296 IAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRMPQLDRALVKERAGRLRA 355
Query: 358 IALKHQNHSFKALLNKPIKALVEN 381
+ + ++ LVEN
Sbjct: 356 RGEALKQAHLQNMVGSVQTVLVEN 379
>ref|NP_355629.1| (NC_003062) AGR_C_4885p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88414.1| (AE008182) AGR_C_4885p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 448
Score = 110 bits (275), Expect = 3e-23
Identities = 84/384 (21%), Positives = 169/384 (43%), Gaps = 23/384 (5%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+I+ GC N +SEVM + L N +L+NTC A +++ Q I A +D
Sbjct: 30 VITFGCRLNTYESEVMRAEAEKAGLNN------AVLVNTCAVTGEAVRQARQAIRRARRD 83
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFS----EQVF 126
I++ +GC ++ K ++ PEVD +G+ +K+ + F E++
Sbjct: 84 NPHARIIV-TGCAAQTEKQTFADM-PEVDAV--LGNEEKLKSASYRALPDFGVSAEEKLR 139
Query: 127 LSEHYNARIIT-------GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+++ + + V A++++ GC+ +C+FC IP +G +S + +++ +
Sbjct: 140 VNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQA 199
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQ-QALKSARILYLYPSSTTL 238
L GY ++ D++S+ D + L L + + KQ + R+ +
Sbjct: 200 RRLTESGYCEIVLTGVDATSYGADLPGEPSLGYLAKTLLKQVPDIIRLRLSSIDSIEADH 259
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTI 297
L+ I P F + + +QH D +LK+M+R +A ++ + ++ ++ + +
Sbjct: 260 HLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSLRPDIAFGADM 319
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNK 357
I G P E E E + +E L++F +S E T A + ++ + + R L
Sbjct: 320 IAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRMPQLDRALVKERAGRLRA 379
Query: 358 IALKHQNHSFKALLNKPIKALVEN 381
+ + ++ LVEN
Sbjct: 380 RGEALKQAHLQNMVGSVQTVLVEN 403
>gb|EAA00300.1| (AAAB01008986) agCP9825 [Anopheles gambiae str. PEST]
Length = 581
Score = 110 bits (274), Expect = 4e-23
Identities = 95/394 (24%), Positives = 180/394 (45%), Gaps = 43/394 (10%)
Query: 5 ENKQLCLISLGCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQESIQ 62
+ +++ L GC N D+E++ K + Y T + K AD++L+ TC E A+
Sbjct: 87 QKRKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVLMMTCAIREGAEDTVWN 146
Query: 63 TI--LNAAKDKKEG-----AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIA 115
+ L K K+E + GC++ER K ++ E VD+ G Y + ++A
Sbjct: 147 RLKHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVDVVAGPDAYKDLPRLLA 206
Query: 116 ---KKQNQFSEQVFLSEHYNARI---ITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169
+ Q + + L E Y + + S A+V I GC+ CS+C +P +GK +S
Sbjct: 207 IGQRGQKAINVLLSLDETYADVVPVKLDRKSKTAFVSIMRGCDNMCSYCIVPFTRGKERS 266
Query: 170 RELDSILKEVENLALKGYTDMTFIAQDSSSF-------LYD----------------KGQ 206
R + SI +EV L +G ++T + Q+ +S+ L D K +
Sbjct: 267 RPIKSIREEVLQLENEGIREITLLGQNVNSYRDTSDESLEDAPKEATLLAPGFRTVYKSK 326
Query: 207 KDGLIQLIRAIDKQQALKSARILYL--YPSSTTLELIGAIESSPIFQNYFDMPIQHISDS 264
GL + +A+ RI + +P ++++ I P N +P Q +
Sbjct: 327 VGGLRFAELLTELAEAVPEMRIRFTSPHPKDFPVDVLETIAKYPNICNSLHLPAQSGNTQ 386
Query: 265 MLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTIIVGHPEENESEFEELSAFLDEFQFDR 323
+L++MRR ++ +L L++ ++++ + + S I G E+E EF + + +++ +
Sbjct: 387 VLERMRRGYTREAYLNLVEEVRRIIPNVTLSSDFICGFCGESEPEFADTVSLIEQVGYHA 446
Query: 324 LNIFAFSAEENT--HAYSLEKVPKKTINARIKAL 355
+FA+S E T H + VP++ R++ +
Sbjct: 447 AFLFAYSMREKTTAHRRYSDDVPEEVKQERLRRM 480
>ref|NP_060244.1| (NM_017774) hypothetical protein FLJ20342 [Homo sapiens]
dbj|BAA91102.1| (AK000349) unnamed protein product [Homo sapiens]
Length = 579
Score = 110 bits (274), Expect = 4e-23
Identities = 92/390 (23%), Positives = 177/390 (44%), Gaps = 26/390 (6%)
Query: 15 GCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GCS N D E M G+L Y Y +T +A AD+ L+N+C A+ +I A ++ K
Sbjct: 72 GCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENK 131
Query: 73 EGAILIASGCLSERY--KDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ ++ +GC+ + +D +K L GV D++ ++ + S ++ +
Sbjct: 132 K---IVLAGCVPQAQPRQDYLKGLS-----IIGVQQIDRVVEVVEETIKGHSVRLLGQKK 183
Query: 131 YNARIITGSSVHA----------YVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
N R + G+ + + IS GC C++C +G L S +D ++ +
Sbjct: 184 DNGRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAK 243
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQK--DGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
+G ++ ++D+ ++ D G L +L+ I + L+ Y L
Sbjct: 244 QSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH-L 302
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
E + I + P + +P+Q SDS+L +M+R A +++D +K+ V I + I
Sbjct: 303 EEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDI 362
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNK 357
I G P E + +F+E ++E++F L I F T A +E+VP + R K L++
Sbjct: 363 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSR 422
Query: 358 IALKHQNHSFKALLNKPIKALVENKEGEYF 387
+ + + K + + E+ + +++
Sbjct: 423 VFHSYSPYDHKIGERQQVLVTEESFDSKFY 452
>ref|NP_387344.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47817.1| (AL591793) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 424
Score = 110 bits (274), Expect = 4e-23
Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 24/369 (6%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+I+ GC N +SEVM + L N +L+NTC A +++ Q I A ++
Sbjct: 6 VITFGCRLNTYESEVMRAEAEKAGLNN------AVLVNTCAVTAEAVRQARQAIRRARRE 59
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFS----EQVF 126
I++ +GC ++ K+ E+ EVD +G+ +K+ + + F E++
Sbjct: 60 NPHARIIV-TGCAAQTEKETFAEMA-EVDAV--LGNEEKLASVSYRSLPDFGVSAEEKLR 115
Query: 127 LSEHYNARIIT-------GSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEV 179
+++ + R V A++++ GC+ +C+FC IP +G +S + +++ +
Sbjct: 116 VNDIMSVRATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQA 175
Query: 180 ENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQ-QALKSARILYLYPSSTTL 238
LA GY ++ D++S+ D L L + + KQ + R+ +
Sbjct: 176 RRLAESGYREIVLTGVDATSYGADLPGTPTLGLLAKTLLKQVPEILRLRLSSIDSIEADG 235
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESF-IRSTI 297
L+ I P F + + +QH D +LK+M+R S A D +++++ + + +
Sbjct: 236 HLLDLIAEEPRFMPHLHLSLQHGDDLILKRMKRRHSSADARAFCDEVRRLRPGISLGADM 295
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALN- 356
I G P E E FE ++ L++F +S T A + ++ + + R L
Sbjct: 296 IAGFPTETEPMFENAMRLAEDCGIAHLHVFPYSPRPGTPAARMPQLDRALVKERAARLRA 355
Query: 357 KIALKHQNH 365
K A H H
Sbjct: 356 KGAELHAGH 364
>ref|XP_165724.1| (XM_165724) hypothetical protein XP_165724 [Homo sapiens]
Length = 579
Score = 108 bits (271), Expect = 1e-22
Identities = 91/390 (23%), Positives = 177/390 (45%), Gaps = 26/390 (6%)
Query: 15 GCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GCS N D E M G+L Y Y +T +A AD+ L+N+C A+ +I A ++ K
Sbjct: 72 GCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENK 131
Query: 73 EGAILIASGCLSERY--KDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ ++ +GC+ + +D +K L GV D++ ++ + S ++ +
Sbjct: 132 K---IVLAGCVPQAQPRQDYLKGLS-----IIGVQQIDRVVEVVEETIKGHSVRLLGQKK 183
Query: 131 YNARIITGSSVHA----------YVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
N R + G+ + + I+ GC C++C +G L S +D ++ +
Sbjct: 184 DNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAK 243
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQK--DGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
+G ++ ++D+ ++ D G L +L+ I + L+ Y L
Sbjct: 244 QSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH-L 302
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
E + I + P + +P+Q SDS+L +M+R A +++D +K+ V I + I
Sbjct: 303 EEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDI 362
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNK 357
I G P E + +F+E ++E++F L I F T A +E+VP + R K L++
Sbjct: 363 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSR 422
Query: 358 IALKHQNHSFKALLNKPIKALVENKEGEYF 387
+ + + K + + E+ + +++
Sbjct: 423 VFHSYSPYDHKIGERQQVLVTEESFDSKFY 452
>dbj|BAB55120.1| (AK027449) unnamed protein product [Homo sapiens]
Length = 395
Score = 107 bits (267), Expect = 3e-22
Identities = 94/370 (25%), Positives = 172/370 (46%), Gaps = 38/370 (10%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 10 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 69
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L A K ++ + + GC++ER K+EI VDI G Y + ++A +
Sbjct: 70 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 129
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 130 SGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPLTRGRERSRPI 189
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
S L+EV+ L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 190 ASTLEEVKKLSEQGLKEVTLLGQNVNSFRGNSEVQFNSAVPTNLSRGFTTNYKTKQGGLR 249
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L+ M
Sbjct: 250 FAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAM 309
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ +++L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 310 RRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFA 369
Query: 329 FSAEENTHAY 338
+S + T AY
Sbjct: 370 YSMRQKTRAY 379
>ref|NP_080152.1| (NM_025876) RIKEN cDNA 2310066P17 [Mus musculus]
dbj|BAB26700.1| (AK010097) data source:SPTR, source key:Q9JLH6,
evidence:ISS~homolog to CDK5 ACTIVATOR-BINDING
PROTEIN~putative [Mus musculus]
gb|AAH25132.1| (BC025132) RIKEN cDNA 2310066P17 gene [Mus musculus]
Length = 588
Score = 106 bits (265), Expect = 5e-22
Identities = 111/451 (24%), Positives = 199/451 (43%), Gaps = 43/451 (9%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L K K+ + + GC++ER K EI VD+ G Y + ++A +
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A I+ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPV 278
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
SIL EV L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 279 ASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQGGLR 338
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L M
Sbjct: 339 FSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLDAM 398
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ ++ L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 399 RRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGFLFA 458
Query: 329 FSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEY 386
+S + T AY K VP++ R++ L + + + + K + LV EG
Sbjct: 459 YSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKANKTSVGCSQLVLV---EGFS 515
Query: 387 FYKARDLRWAPEVDGEILINDSELTTPLKPG 417
DL + + +++ D+E+ PG
Sbjct: 516 KRSTTDLCGRNDANLKVIFPDAEVEDITNPG 546
>gb|EAA09381.1| (AAAB01008900) agCP15149 [Anopheles gambiae str. PEST]
Length = 514
Score = 106 bits (265), Expect = 5e-22
Identities = 87/373 (23%), Positives = 173/373 (46%), Gaps = 26/373 (6%)
Query: 3 VKENKQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQES 60
+ E + + + + GC+ N D+E M G+L Y Y LT+D SAD+ ++N+C +++ +++
Sbjct: 62 IPETQHIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCT-VKNPSEDT 120
Query: 61 IQTILNAAKDKKEGAILIASGCLSERY--KDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
+ + AA + G ++ +GC+ + D +K L GV D++ ++ +
Sbjct: 121 FRNEIEAAH--QAGKHVVVAGCVPQAAPRSDYLKGLS-----VVGVQQIDRVAEVVEETL 173
Query: 119 NQFSEQVFLSEHYNARIITGSSVHA----------YVKISEGCNQKCSFCAIPSFKGKLQ 168
S ++ ++ + R + G + + I+ GC C++C + L
Sbjct: 174 KGHSVRLLQAKKVDGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLV 233
Query: 169 SRELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQK--DGLIQLIRAIDKQQALKSA 226
S + I+ + + G ++ ++D+ ++ D G + L QL+ I + ++
Sbjct: 234 SYPVQEIVDRAQQVFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLVEVIPEGCMMRLG 293
Query: 227 RILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK 286
Y L+ + I S P ++ +P+Q SD++L +MRR +++D ++
Sbjct: 294 MTNPPYILEH-LDEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLR 352
Query: 287 -QVKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPK 345
QV I + II G P E E++F++ A +++QF L I F T A + KVP
Sbjct: 353 AQVPGITIATDIICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMTKVPA 412
Query: 346 KTINARIKALNKI 358
+ R K L +
Sbjct: 413 NEVKTRTKRLTDL 425
>ref|XP_110019.1| (XM_110019) RIKEN cDNA 6620401C13 [Mus musculus]
ref|XP_127259.1| (XM_127259) RIKEN cDNA 6620401C13 [Mus musculus]
ref|NP_653119.1| (NM_144536) RIKEN cDNA 1190005B03 [Mus musculus]
gb|AAH16073.1|AAH16073 (BC016073) Unknown (protein for MGC:27555) [Mus musculus]
Length = 578
Score = 105 bits (261), Expect = 1e-21
Identities = 90/390 (23%), Positives = 175/390 (44%), Gaps = 26/390 (6%)
Query: 15 GCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GCS N D E M G+L Y Y +T +A AD+ L+N+C A+ +I A ++ K
Sbjct: 71 GCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENK 130
Query: 73 EGAILIASGCLSERY--KDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEH 130
+ ++ +GC+ + +D +K L GV D++ ++ + S ++ +
Sbjct: 131 K---VVLAGCVPQAQPRQDYLKGLS-----IIGVQQIDRVVEVVEETIKGHSVRLLGQKK 182
Query: 131 YNARIITGSSVHA----------YVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
N + + G+ + + I+ GC C++C +G L S +D +++ +
Sbjct: 183 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAK 242
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQK--DGLIQLIRAIDKQQALKSARILYLYPSSTTL 238
+G ++ ++D+ ++ D G L +L+ I + L+ Y L
Sbjct: 243 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH-L 301
Query: 239 ELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTI 297
E + I + P + +P+Q SDS+L M+R A +++D +K+ V I + I
Sbjct: 302 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDI 361
Query: 298 IVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNK 357
I G P E + +F+E ++E++F L I F T A E+VP R K L++
Sbjct: 362 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSR 421
Query: 358 IALKHQNHSFKALLNKPIKALVENKEGEYF 387
+ + + K + + E+ + +++
Sbjct: 422 VFHSYNPYDHKIGERQQVLVTEESFDSKFY 451
>gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding protein [Rattus norvegicus]
Length = 586
Score = 104 bits (260), Expect = 2e-21
Identities = 100/389 (25%), Positives = 177/389 (44%), Gaps = 40/389 (10%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQT- 63
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q
Sbjct: 97 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 156
Query: 64 ----ILNAAKDKKEGAILIAS-GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
+L A + + + I GC++ER K EI VD+ G Y + ++A +
Sbjct: 157 HQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 216
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A I+ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 217 SGQQAANVLLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPV 276
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKDGL- 210
SIL EV L+ +G ++T + Q+ +SF + K ++ GL
Sbjct: 277 ASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQGGLR 336
Query: 211 -IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKM 269
L+ + + R +P E++ I +P Q S +L+ M
Sbjct: 337 FSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLEAM 396
Query: 270 RRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFA 328
RR S+ ++ L+ +++ + + S I G E E + + + L E Q++ +FA
Sbjct: 397 RRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGFLFA 456
Query: 329 FSAEENTHAYSLEK--VPKKTINARIKAL 355
+S + T AY K VP++ R++ L
Sbjct: 457 YSMRQKTRAYHRLKDDVPEEVKLRRLEEL 485
>ref|NP_143704.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71200 hypothetical protein PH1875 - Pyrococcus horikoshii
Length = 432
Score = 104 bits (259), Expect = 2e-21
Identities = 87/384 (22%), Positives = 180/384 (46%), Gaps = 23/384 (5%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC++N D E+M LY + + + ++++++N+C + +++ + I + K
Sbjct: 17 GCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRELLDNGK 76
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
+ +I +GCL D I E V GV D+I + A + E++ +
Sbjct: 77 K---VIVTGCLPHVNPDVIDE---RVSAILGVKSIDRI--VQAVEYAMRGEKLISVPDWK 128
Query: 133 ARII--------TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLAL 184
R + + +V+ + I+EGC C++CA +G L+S + I+ V+
Sbjct: 129 KRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIK 188
Query: 185 KGYTDMTFIAQDSSSFLYDKGQKDG-LIQLIRAIDKQQALKSARILYLYPSSTTLELIGA 243
+GY ++ A+D+ + +D G LI I AI+ + ++ + + ELI A
Sbjct: 189 QGYKEIWLSAEDTGCYGFDIGTNLAKLIDEITAIEGEFRIRVGMMNPNHVLKFLDELIDA 248
Query: 244 IESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHP 302
+ +++ + +P+Q + +L+KM R + +++ A + + E + + IIVG P
Sbjct: 249 YKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKH 362
E+E F+ + + D++N+ +S T A +++P + R + L++I L+
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 367
Query: 363 QNHSFKALLNKPIKALV--ENKEG 384
+ + K +K L+ E K+G
Sbjct: 368 SYEINRKYIGKKVKVLIHGEGKKG 391
>sp|O59545|YI75_PYRHO Hypothetical protein PH1875
Length = 425
Score = 104 bits (259), Expect = 2e-21
Identities = 87/384 (22%), Positives = 180/384 (46%), Gaps = 23/384 (5%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC++N D E+M LY + + + ++++++N+C + +++ + I + K
Sbjct: 10 GCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRELLDNGK 69
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
+ +I +GCL D I E V GV D+I + A + E++ +
Sbjct: 70 K---VIVTGCLPHVNPDVIDE---RVSAILGVKSIDRI--VQAVEYAMRGEKLISVPDWK 121
Query: 133 ARII--------TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLAL 184
R + + +V+ + I+EGC C++CA +G L+S + I+ V+
Sbjct: 122 KRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIK 181
Query: 185 KGYTDMTFIAQDSSSFLYDKGQKDG-LIQLIRAIDKQQALKSARILYLYPSSTTLELIGA 243
+GY ++ A+D+ + +D G LI I AI+ + ++ + + ELI A
Sbjct: 182 QGYKEIWLSAEDTGCYGFDIGTNLAKLIDEITAIEGEFRIRVGMMNPNHVLKFLDELIDA 241
Query: 244 IESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKESFIRSTIIVGHP 302
+ +++ + +P+Q + +L+KM R + +++ A + + E + + IIVG P
Sbjct: 242 YKDEKVYK-FLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 300
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKH 362
E+E F+ + + D++N+ +S T A +++P + R + L++I L+
Sbjct: 301 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 360
Query: 363 QNHSFKALLNKPIKALV--ENKEG 384
+ + K +K L+ E K+G
Sbjct: 361 SYEINRKYIGKKVKVLIHGEGKKG 384
>ref|NP_579641.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL82036.1| (AE010285) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 425
Score = 104 bits (259), Expect = 2e-21
Identities = 87/384 (22%), Positives = 183/384 (47%), Gaps = 23/384 (5%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC++N D E+M G L + Y + ++AD++++N+C ++ + I + D+
Sbjct: 10 GCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCA-VKDPTEVKIARRIRELLDR- 67
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
G +I +GCL D I E + V GV D+I + A + E++ +
Sbjct: 68 -GKKVIVTGCLPHVNPDAIDERVSAV---LGVKSIDRI--VQAVEYALRGEKLISVPDWR 121
Query: 133 ARII--------TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLAL 184
R + + VH + I+EGC C++CA S +G L+S + I++ V+
Sbjct: 122 KRNLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIR 181
Query: 185 KGYTDMTFIAQDSSSFLYDKGQK-DGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGA 243
+GY ++ A+D+ + +D G L+ I AI+ + ++ + + ELI A
Sbjct: 182 QGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRIRVGMMNPNHVLKFLDELIEA 241
Query: 244 IESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM-KQVKESFIRSTIIVGHP 302
+ +++ + +P+Q + +L++M R + ++++A ++ + + + IIVG P
Sbjct: 242 YKDEKVYK-FLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFP 300
Query: 303 EENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKH 362
E+E F+ + + D++N+ +S T A +++P + R + ++++ L+
Sbjct: 301 GESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRIMHRVRLQI 360
Query: 363 QNHSFKALLNKPIKALV--ENKEG 384
+ + + + LV E K+G
Sbjct: 361 SYEINQRYVGRKVDILVHGEGKKG 384
>ref|NP_218710.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83293|Y269_TREPA Hypothetical protein TP0269
pir||G71345 conserved hypothetical protein TP0269 - syphilis spirochete
gb|AAC65257.1| (AE001208) conserved hypothetical protein [Treponema pallidum]
Length = 482
Score = 103 bits (257), Expect = 4e-21
Identities = 66/240 (27%), Positives = 124/240 (51%), Gaps = 6/240 (2%)
Query: 143 AYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLY 202
A +K+ +GCN C+FC I +G+ S E ++ V+ L +G +++ + S +
Sbjct: 205 ASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGRVQALEARGMSEVVLTGVNLSQYRS 264
Query: 203 DKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHIS 262
GL++LI + + + RI LYP S T + AI + + +F + +Q S
Sbjct: 265 GSIDFAGLLELI--VQETHTI-HIRISSLYPESVTSAFLRAIAHTRV-SPHFHLSVQSGS 320
Query: 263 DSMLKKMRRNSSQAHHLKLLDAMKQVKES-FIRSTIIVGHPEENESEFEELSAFLDEFQF 321
D +L++MRR ++A + + ++ V+E F+ IIVG P E E +F + +F
Sbjct: 321 DRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTLRF 380
Query: 322 DRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVE 380
+++F FSA T A++++ KVP++ R+ A+ ++A K+ + + + A+VE
Sbjct: 381 AGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQLAEKNYRAYLEYWNGRELCAVVE 440
>ref|NP_111857.1| (NC_002689) 2-methylthioadenine synthetase [Thermoplasma volcanium]
dbj|BAB60504.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 401
Score = 102 bits (255), Expect = 7e-21
Identities = 91/392 (23%), Positives = 178/392 (45%), Gaps = 35/392 (8%)
Query: 15 GCSKNLVDSEVMLGKLYNY--TLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC+ N ++ + + KL N TL ++ K AD+ +I TC I+ + + I N ++ K
Sbjct: 9 GCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQNLSRFGK 68
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
I GCL+ + E D + ++ + F E + N
Sbjct: 69 VEVI----GCLAPVKGKTMVE--------------DNVSVIEKDRFRSFQEVIDEVSPVN 110
Query: 133 ARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
A I++G + I++GC KC+FC +GKL SR+ + I +++ L +G ++
Sbjct: 111 AEIVSG------IPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKEIKI 164
Query: 193 IAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSST---TLELIGAIESSPI 249
+ D++++ D G + L LIR I + R+ + P +T +LI A S +
Sbjct: 165 TSLDTAAYGKDIGLR--LPHLIRTITEIGDDFRLRVGMMEPKNTLEIVDDLISAYRSEKV 222
Query: 250 FQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV-KESFIRSTIIVGHPEENESE 308
F+ + +P+Q D +L+ M R + + +++ ++ +S + + +I+G+ EN+
Sbjct: 223 FK-FLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAENDDS 281
Query: 309 FEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNHSFK 368
FE+ +++ + + +N+ FS E T + P + + + + + + F
Sbjct: 282 FEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKPTNILKEQDRMIADMHKEILQEKFS 341
Query: 369 ALLNKPIKALV-ENKEGEYFYKARDLRWAPEV 399
L+ K L+ EN +G RD + P V
Sbjct: 342 NLIGKTEFVLITENGKGRSMI-GRDHAYRPIV 372
>ref|NP_539050.1| (NC_003317) Fe-S OXIDOREDUCTASE [Brucella melitensis]
gb|AAL51314.1| (AE009456) Fe-S OXIDOREDUCTASE [Brucella melitensis]
Length = 447
Score = 102 bits (253), Expect = 1e-20
Identities = 91/386 (23%), Positives = 172/386 (43%), Gaps = 18/386 (4%)
Query: 11 LISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD 70
+++ GC N +SEVM + L A I+ NTC A +++ Q I A ++
Sbjct: 25 IVTFGCRLNTYESEVMKREADAAGLGTLKDGA--IIFNTCAVTAEAVRQARQAIRKARRE 82
Query: 71 KKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKID---IMIAKKQNQFSEQVFL 127
+ I++ +GC ++ D + EVD+ G + K + ++ NQF E+V +
Sbjct: 83 NPDARIIV-TGCAAQTEADNFAAM-GEVDLVLGNEEKLKSNSYRMLPDFGVNQF-EKVRV 139
Query: 128 SEHYNARIITGSSV-------HAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVE 180
++ R V A+V++ GC+ +C+FC IP +G +S + +++ +V+
Sbjct: 140 NDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQVK 199
Query: 181 NLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQ-QALKSARILYLYPSSTTLE 239
L GY ++ D +S+ D L +L++ + Q L+ R+ + +
Sbjct: 200 RLVGNGYAEVVLTGVDMTSYGPDLPSNLRLGKLVKTVLAQVPDLQRLRLSSIDSIEADED 259
Query: 240 LIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFI-RSTII 298
L+ AI S + + +Q D +LK+M+R + ++ + ++ + + II
Sbjct: 260 LMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARALRPDIVFGADII 319
Query: 299 VGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKI 358
G P E E F+ ++E L++F +S E T A + +V ++ + R L
Sbjct: 320 AGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMPQVRREIVKERAARLRAE 379
Query: 359 ALKHQNHSFKALLNKPIKALVENKEG 384
+ AL + LVE KEG
Sbjct: 380 GDRAYEKHLNALHGTRQRLLVE-KEG 404
>ref|NP_148004.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72634 hypothetical protein APE1530 - Aeropyrum pernix (strain K1)
dbj|BAA80529.1| (AP000061) 456aa long hypothetical protein [Aeropyrum pernix]
Length = 456
Score = 102 bits (253), Expect = 1e-20
Identities = 93/391 (23%), Positives = 170/391 (42%), Gaps = 18/391 (4%)
Query: 4 KENKQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQ--- 58
K ++ L GCS + D+ +M +L Y + ADVIL+NTC +Q
Sbjct: 21 KPSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIA 80
Query: 59 ESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
E ++ + D+K + +GCL + + L+PE + +D + A +
Sbjct: 81 ERLEKLRLQLPDRK----YVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALES 136
Query: 119 NQFSEQVFLSEHYNARIITGSSVH---AYVKISEGCNQKCSFCAIPSFKGKLQSRELDSI 175
+ V L + R + + V I EGC CSFC + +++S I
Sbjct: 137 GR--RLVVLDGRRDTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVI 194
Query: 176 LKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAI-DKQQALKSARILYLYPS 234
++ V KG ++ D + + D K L L+ AI +K + R+ + P
Sbjct: 195 VERVREAVEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKVEGDYRIRVGMMTPD 254
Query: 235 STT--LELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMK-QVKES 291
L+ + + YF +P+Q D +LK M+RN + + + + +K + ++
Sbjct: 255 QVEPYLDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDA 314
Query: 292 FIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINAR 351
I + IIVGHP E F ++E +F+++++ +S +T A S+E+VP R
Sbjct: 315 MIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKER 374
Query: 352 IKALNKIALKHQNHSFKALLNKPIKALVENK 382
+ L KI + + + + ++ALV +
Sbjct: 375 SRILGKIVAEIGLEINGSYVGRRVRALVTER 405
>ref|NP_247862.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58277|Y867_METJA Hypothetical protein MJ0867
pir||C64408 hypothetical protein HI0019 homolog - Methanococcus jannaschii
gb|AAB98872.1| (U67530) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 427
Score = 101 bits (252), Expect = 2e-20
Identities = 89/392 (22%), Positives = 177/392 (44%), Gaps = 26/392 (6%)
Query: 1 MQVKENKQLCLISLGCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQ 58
+QV + ++ + GC N D+E++ L + + + N+ + AD+ +INTC +
Sbjct: 6 LQVVMDMRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETEN 65
Query: 59 ESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
I I K G ++ +GCL + K+++K + I+ + K ++
Sbjct: 66 RMIYRINEL---KNLGKEVVVAGCLPKALKNKVKGFL---HIYPR--EAHKAGEILKNYV 117
Query: 119 NQFSEQVFLSEHYNARIITG-----SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
+ ++ E N + S+ + I EGC CS+C + +G L S +
Sbjct: 118 EKHYRMPYIEEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPRE 177
Query: 174 SILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYP 233
I+ + + L KG + AQD++ + +D G D L L+ + + + R+ ++
Sbjct: 178 KIVNKAKELINKGAKCLLITAQDTACYGFDIG--DNLANLLNELTQIKGEFIMRVGMMHA 235
Query: 234 SSTTLELIGAIESSPIFQN-----YFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ- 287
+ L L IE ++QN + +P+Q D +LK+M+R + +++ ++
Sbjct: 236 KNAELILDELIE---VYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRK 292
Query: 288 VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKT 347
+K + IIVG P E E +F+ L E + D ++ +S + T A ++++ K
Sbjct: 293 IKNLCFTTDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKI 352
Query: 348 INARIKALNKIALKHQNHSFKALLNKPIKALV 379
R + L+K+ + + K + K +K LV
Sbjct: 353 RKRRSEILDKLRRELSYLNNKKYIGKAMKVLV 384
>ref|NP_057166.1| (NM_016082) CGI-05 protein; hypothetical protein [Homo sapiens]
gb|AAD34147.1|AF152097_1 (AF152097) CGI-05 protein [Homo sapiens]
Length = 554
Score = 99.8 bits (247), Expect = 6e-20
Identities = 112/464 (24%), Positives = 202/464 (43%), Gaps = 56/464 (12%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKS-ADVILINTCGFIESAKQESIQTI- 64
+++ L + GC N+ D+E+ L S ADVIL+ TC E A+Q +
Sbjct: 61 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRPVTSRADVILLVTCSIREKAEQTIWNRLH 120
Query: 65 -LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQN 119
L A K ++ + + GC++ER K+EI VDI G Y + ++A ++
Sbjct: 121 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 180
Query: 120 -QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELD 173
Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 181 GQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIA 240
Query: 174 SILKEVENLA--------------LKGYTDMTFIAQDSSSFLYD---------------- 203
SIL+EV+ L+ L+G ++T + Q+ +SF +
Sbjct: 241 SILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRG 300
Query: 204 -----KGQKDGL--IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDM 256
K ++ GL L+ + + R +P E++ I +
Sbjct: 301 FTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHL 360
Query: 257 PIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAF 315
P Q S +L+ MRR S+ +++L+ +++ + + S I G E E + + +
Sbjct: 361 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSL 420
Query: 316 LDEFQFDRLNIFAFSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNK 373
L E Q++ +FA+S + T AY K VP++ R++ L I + + + +
Sbjct: 421 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGC 480
Query: 374 PIKALVENKEGEYFYKARDLRWAPEVDGEILINDSELTTPLKPG 417
LV EG A DL + + +++ D+E+ PG
Sbjct: 481 TQLVLV---EGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPG 521
>ref|NP_127405.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
sp|Q9UXX9|YB34_PYRAB Hypothetical protein PAB1134
pir||D75024 hypothetical protein PAB1134 - Pyrococcus abyssi (strain Orsay)
emb|CAB50634.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 425
Score = 98.2 bits (243), Expect = 2e-19
Identities = 83/387 (21%), Positives = 179/387 (45%), Gaps = 29/387 (7%)
Query: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC++N D E+M L+ + + D +++++N+C + +++ + I K
Sbjct: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGK 69
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS---- 128
+ +I +GCL D I E + +G+ ID +I + + +S
Sbjct: 70 K---VIVTGCLPHVNPDVIDERV------SGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
Query: 129 -----EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
+ + ++ +V+ V I+EGC C++CA +G L+S + I+ V+
Sbjct: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
Query: 184 LKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL---EL 240
+GY ++ A+D+ + +D G L +L+ I + R+ + P+ EL
Sbjct: 181 KQGYKEIWLSAEDTGCYGFDIG--TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDEL 238
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLL-DAMKQVKESFIRSTIIV 299
I A + I++ + +P+Q + +L++M RN + +++ + K+ + + + IIV
Sbjct: 239 IEAYQDEKIYK-FLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
Query: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIA 359
G P E++ F+ + + D++N+ +S T A +++P + R + L++I
Sbjct: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
Query: 360 LKHQNHSFKALLNKPIKALV--ENKEG 384
L+ + + K ++ L+ E K+G
Sbjct: 358 LQISYEINQKYIGKKVEVLIHGEGKKG 384
>ref|NP_560369.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL64551.1| (AE009902) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 416
Score = 98.2 bits (243), Expect = 2e-19
Identities = 86/362 (23%), Positives = 164/362 (44%), Gaps = 39/362 (10%)
Query: 15 GCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKKEG 74
GC D+E++ +L L ++ + +DV+LI TC E + + I + AK +E
Sbjct: 10 GCWLAKADAEILRQRL-GLELASNVEESDVVLIYTCAVREDGEVRQLARIRDLAKSGRE- 67
Query: 75 AILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYNAR 134
+I +GCL+ IK L P + + +QV +
Sbjct: 68 --MIVAGCLARLRPYTIKSLAPGAALI-------------------YPQQVEGGPEREMK 106
Query: 135 II---TGSSVHAYVKISEGCNQKCSFCAIPSFKGK---LQSRELDSILKEVENLALKGYT 188
I+ +G V+ V + GC C+FCA +G ++S + + ++++V+ G
Sbjct: 107 ILPEFSGGVVYT-VPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVAMGAR 165
Query: 189 DMTFIAQDSSSFLYDKGQKDG------LIQLIRAIDKQQALKSARILYLYPSSTTLELIG 242
++ QD ++ ++ K G L ++++ +D + ++ +++
Sbjct: 166 EIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEVDGEYRIRIGMSEPWVFEKFADQILD 225
Query: 243 AIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQV--KESFIRSTIIVG 300
++ YF +P+Q SD +L+ M R + + +L+ +++V + +FI + IIVG
Sbjct: 226 VVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIATDIIVG 285
Query: 301 HPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEK-VPKKTINARIKALNKIA 359
P E E +F +E QFD++++ FS T A + K VP R KAL++I+
Sbjct: 286 FPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSKALSEIS 345
Query: 360 LK 361
LK
Sbjct: 346 LK 347
>ref|NP_393736.1| (NC_002578) hypothetical protein [Thermoplasma acidophilum]
emb|CAC11401.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 95.9 bits (237), Expect = 8e-19
Identities = 87/392 (22%), Positives = 175/392 (44%), Gaps = 35/392 (8%)
Query: 15 GCSKNLVDSEVMLGKLYNY--TLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC+ N ++ + + KL + L + AD+ +I TC I+ + ++ I ++ +
Sbjct: 9 GCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEELSRLGR 68
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
I GCLS EI G+ + ID +N+F + E+
Sbjct: 69 VKVI----GCLSAIKGSEISG-----------GNIEAID------RNEFQQ---FQEYLE 104
Query: 133 ARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
I + + + + I++GC KC+FC +GKL SR + I+ ++ + G ++
Sbjct: 105 DTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGKREIRI 164
Query: 193 IAQDSSSFLYDKGQK-DGLIQLIRAIDKQQALKSARILYLYPSSTTL---ELIGAIESSP 248
+ D++++ D G + LI+ I A+D L R+ + P +T +L+ A +
Sbjct: 165 SSLDTAAYGKDTGYRLPSLIKDITAVDGDFML---RVGMMEPRNTIEILDDLLEAYDDPK 221
Query: 249 IFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM-KQVKESFIRSTIIVGHPEENES 307
+F+ + +P+Q D +L M R + ++++++ K+ + I + +I+G+ EN+
Sbjct: 222 VFK-FLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHAENDR 280
Query: 308 EFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIALKHQNHSF 367
F+ + + Q + +N+ FS E T + P + + + + +I K + F
Sbjct: 281 SFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRKIVSERF 340
Query: 368 KALLNKPIKALVENKEGEYFYKARDLRWAPEV 399
AL+ K + L+ RD + P V
Sbjct: 341 SALVGKVERILITEDGKPGTMVGRDASYRPVV 372
>gb|AAH01215.1|AAH01215 (BC001215) Similar to CGI-05 protein [Homo sapiens]
Length = 510
Score = 92.0 bits (227), Expect = 1e-17
Identities = 103/428 (24%), Positives = 182/428 (42%), Gaps = 74/428 (17%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDY-DKIDIMIAKK 117
L A K ++ + + GC++ER K+EI VDI G Y D ++ +
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 219
Query: 118 QNQFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
Q + V LS + A ++ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 220 SGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPI 279
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLY 232
SIL+EV+ L+ + ++QLI D
Sbjct: 280 ASILEEVKKLS------------------------EQVLQLIHERDN------------- 302
Query: 233 PSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKES 291
+P Q S +L+ MRR S+ +++L+ +++ +
Sbjct: 303 -----------------ICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGV 345
Query: 292 FIRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEK--VPKKTIN 349
+ S I G E E + + + L E Q++ +FA+S + T AY K VP++
Sbjct: 346 SLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKL 405
Query: 350 ARIKALNKIALKHQNHSFKALLNKPIKALVENKEGEYFYKARDLRWAPEVDGEILINDSE 409
R++ L I + + + + LV EG A DL + + +++ D+E
Sbjct: 406 RRLEELITIFREEATKANQTSVGCTQLVLV---EGLSKRSATDLCGRNDGNLKVIFPDAE 462
Query: 410 LTTPLKPG 417
+ PG
Sbjct: 463 MEDVNNPG 470
>ref|NP_611207.1| (NM_137363) CG6550 gene product [Drosophila melanogaster]
gb|AAF57870.1| (AE003803) CG6550-PA [Drosophila melanogaster]
gb|AAK93058.1| (AY051634) GH28477p [Drosophila melanogaster]
Length = 552
Score = 91.3 bits (225), Expect = 2e-17
Identities = 84/374 (22%), Positives = 164/374 (43%), Gaps = 36/374 (9%)
Query: 15 GCSKNLVDSEVMLGKL--YNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKD-K 71
GC+ N DSE M G+L Y Y L+ + AD+ L+N+C + K S T N +
Sbjct: 79 GCAHNNSDSEYMAGQLAAYGYRLSGK-EEADLWLLNSC----TVKNPSEDTFRNEIESGM 133
Query: 72 KEGAILIASGCLSERYKDEIKELIPEVDIFTG-----VGDYDKIDIMIAKKQNQFSEQVF 126
+ G ++ +GC+ + P+ D G V D++ ++ + S Q+
Sbjct: 134 RNGKHVVVAGCVPQG--------APKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185
Query: 127 LSEH-YNARIITGSSVHA----------YVKISEGCNQKCSFCAIPSFKGKLQSRELDSI 175
++ + R + G+ + + I+ GC +C++C +G L S + +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 176 LKEVENLALKGYTDMTFIAQDSSSFLYDKGQK--DGLIQLIRAIDKQQALKSARILYLYP 233
++ +G ++ ++D+ ++ D G + L QL+ I + L+ Y
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMTNPPYI 305
Query: 234 SSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQ-VKESF 292
LE + + P ++ +P+Q SDS+L +M+R + ++D +++ V
Sbjct: 306 LEH-LEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVT 364
Query: 293 IRSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARI 352
I + II G P E E +FEE +++F L I F T A ++++P + R
Sbjct: 365 IATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKRT 424
Query: 353 KALNKIALKHQNHS 366
K L + ++ ++
Sbjct: 425 KRLTDLFYSYEPYA 438
>ref|NP_614364.1| (NC_003551) 2-methylthioadenine synthetase [Methanopyrus kandleri
AV19]
gb|AAM02294.1| (AE010397) 2-methylthioadenine synthetase [Methanopyrus kandleri
AV19]
Length = 423
Score = 91.3 bits (225), Expect = 2e-17
Identities = 87/378 (23%), Positives = 174/378 (46%), Gaps = 26/378 (6%)
Query: 15 GCSKNLVDSEVM--LGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC+ N D ++ L + + + DA++ADV ++ TC ++S+ + +
Sbjct: 10 GCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTC-----IVRDSVDARMVNRMREL 64
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
E + +GC E Y + ++L P+ + G D+I + + + FL E +
Sbjct: 65 ERVPTVVAGCFPEAYPERARKLRPDAAL-VGPRHLDRIPEAV-RAVLRGDRVEFLGERED 122
Query: 133 ARIITGS-----SVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGY 187
+ ++ A V I+EGC +C++CA+ +G L+S + IL+ V+ +G
Sbjct: 123 IDWKADAPRELPNLAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELERGA 182
Query: 188 TDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARIL-------YLYPSSTTLEL 240
++ AQD++++ D+G +++L+ + + AR+ + YP S L
Sbjct: 183 VEIHLTAQDTATYGLDRG--TNVVELLEDVVDLCSRYGARVRLGMFNPGHAYPISDDLAD 240
Query: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIV 299
+ A ++++ MP+Q D +L++M RN + L++ A ++ F T +IV
Sbjct: 241 LFASRDDVLYRS-IHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIV 299
Query: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLE-KVPKKTINARIKALNKI 358
G P E E F FL+ + L+ F T A +E +VP+ R + L++
Sbjct: 300 GFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVPEDVKLRRSRILHRK 359
Query: 359 ALKHQNHSFKALLNKPIK 376
L+ + + L+ + ++
Sbjct: 360 RLEWAEEANRELIGETVE 377
>dbj|BAB26688.1| (AK010081) data source:SPTR, source key:Q9JLH6,
evidence:ISS~homolog to CDK5 ACTIVATOR-BINDING
PROTEIN~putative [Mus musculus]
Length = 351
Score = 85.9 bits (211), Expect = 9e-16
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 14/208 (6%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQ 118
L K K+ + + GC++ER K EI VD+ G Y + ++A +
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218
Query: 119 N-QFSEQVFLS-EHYNARII----TGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSREL 172
+ Q + V LS + A I+ + S+ A+V I GC+ CS+C +P +G+ +SR +
Sbjct: 219 SGQQAANVLLSLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPV 278
Query: 173 DSILKEVENLALKGYTDMTFIAQDSSSF 200
SIL EV L+ +G ++T + Q+ +SF
Sbjct: 279 ASILDEVRKLSEQGLKEVTLLGQNVNSF 306
>pir||T10440 conserved hypothetical protein - Mycoplasma iowae
gb|AAC44029.1| (U29676) unknown [Mycoplasma iowae]
Length = 199
Score = 80.9 bits (198), Expect = 3e-14
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 15/184 (8%)
Query: 13 SLGCSKNLVDSEVMLGKLYNYTLTN---DAKSADVILINTCGFIESAKQESIQTILNAAK 69
+LGC NL +S + L L D+K ADV +INTC A +S I A
Sbjct: 14 TLGCKVNLFESNSIKNDLIMNGLVEVPFDSK-ADVYIINTCTVTNKADAKSRLYIKRAHV 72
Query: 70 DKKEGAILIASGCLSERYKDEIKELIPEVDI--------FTGVGDYDKIDIMIAKKQNQF 121
K+ AI+I +GC+S+ KD + +L + I F + +Y K I + +N
Sbjct: 73 QNKD-AIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRERIYRVENIL 131
Query: 122 SEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
+E+ F E I + A++KI +GCN CS+C IP +G+ +S++++SIL++++
Sbjct: 132 AEKKF--EQTTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKT 189
Query: 182 LALK 185
L K
Sbjct: 190 LVSK 193
>ref|NP_057492.1| (NM_016408) hypothetical protein HSPC167; hypothetical protein;
CGI-05 protein [Homo sapiens]
gb|AAF29131.1|AF161516_1 (AF161516) HSPC167 [Homo sapiens]
Length = 586
Score = 80.1 bits (196), Expect = 5e-14
Identities = 103/454 (22%), Positives = 191/454 (41%), Gaps = 50/454 (11%)
Query: 7 KQLCLISLGCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTI 64
+++ L + GC N+ D+E+ L Y T++ + ADVIL+ TC E A+Q +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 65 --LNAAKDKKEGAILIAS----GCLSERYKDEIKELIPEVDIFTGVGDYDKID---IMIA 115
L A K ++ + + GC++ER K+EI VDI G Y + +M++
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPGCWLMLS 219
Query: 116 KKQ------NQFSEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQS 169
+ + ++ + +S S+ A+V I GC+ CS+C + S G +
Sbjct: 220 RASKLPTCCSLWTRPMLMSCQSRQG---ASATSAFVSIMRGCDNMCSYCIVLS-PGAGRG 275
Query: 170 RELDSILKEVENLALKGYTDMTFIAQDSSSFLYD---------------------KGQKD 208
L + E L G ++T + Q+ +SF + K ++
Sbjct: 276 VGLLPHSRGSEEAFLAGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQG 335
Query: 209 GL--IQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSML 266
GL L+ + + R +P E++ I +P Q S +L
Sbjct: 336 GLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVL 395
Query: 267 KKMRRNSSQAHHLKLLDAMKQ-VKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRLN 325
+ MRR S+ +++L+ +++ + + S I G E E + + + L E Q++
Sbjct: 396 EAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGF 455
Query: 326 IFAFSAEENTHAYSLEK--VPKKTINARIKALNKIALKHQNHSFKALLNKPIKALVENKE 383
+FA+S + T AY K VP++ R++ L I + + + + + LV E
Sbjct: 456 LFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEASKANQTSVGCTQLVLV---E 512
Query: 384 GEYFYKARDLRWAPEVDGEILINDSELTTPLKPG 417
G A DL + + +++ D+E+ PG
Sbjct: 513 GLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPG 546
>ref|NP_280583.1| (NC_002607) Vng1861c [Halobacterium sp. NRC-1]
gb|AAG20063.1| (AE005086) Vng1861c [Halobacterium sp. NRC-1]
Length = 432
Score = 79.3 bits (194), Expect = 8e-14
Identities = 76/352 (21%), Positives = 144/352 (40%), Gaps = 21/352 (5%)
Query: 15 GCSKNLVDSEVMLGKLYN--YTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
GC+ N +S + +L + + A ADV ++NTC +E ++ ++ A
Sbjct: 10 GCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKELAD--- 66
Query: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLSEHYN 132
E A LI +GC++ E + D+ V +D + + + + +
Sbjct: 67 ETADLIVTGCMALAQG----EAFADADVDAQVLHWDDVPEAVTNGECPTTTP-------D 115
Query: 133 ARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF 192
A I V + I+ GC CS+C G++ S ++ +++ L G ++
Sbjct: 116 AEPILDGVV-GILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEIRI 174
Query: 193 IAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSST---TLELIGAIESSPI 249
QD+ + +D G++ L R + + R+ P EL
Sbjct: 175 TGQDTGVYGWDTGERKLPELLERIATEIEGEFRVRVGMANPGGVHGIREELAAVFAEHDE 234
Query: 250 FQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRST-IIVGHPEENESE 308
N+ P+Q SD +L MRR + + +++ + ST IVG P E++ +
Sbjct: 235 IYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTEDDDD 294
Query: 309 FEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIAL 360
E L E + +++N+ FS T A L+ + +T R KA+ ++ +
Sbjct: 295 HEASMDLLRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTELKM 346
>ref|NP_247860.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58275|Y865_METJA Hypothetical protein MJ0865
pir||A64408 conserved hypothetical protein MJ0865 - Methanococcus jannaschii
gb|AAB98870.1| (U67530) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 449
Score = 63.2 bits (152), Expect = 6e-09
Identities = 71/318 (22%), Positives = 146/318 (45%), Gaps = 41/318 (12%)
Query: 42 ADVI---LINTCGFIESAKQESIQTILNAAKDKKEGAILIASGCLSERYKDEIKELIPEV 98
+DVI L +T ++ +E+I I K+K + + +GC+S + + EL V
Sbjct: 52 SDVIIFSLYSTLHILDKNIREAIDFIKKVRKNKTK---VYVAGCVSTYPEIILNEL--NV 106
Query: 99 D-IFTGVGDY------------------DKIDIMIAKKQNQFSEQV-FLSEHYNARIITG 138
D + G G+ D+I I K++ + + + + + I G
Sbjct: 107 DGVIVGEGEITTPKIIEGDKEGLAYKEGDEIVINYPKEKPDLNHPLPLIPKDIEQQSIRG 166
Query: 139 SSVHAYVKISEGCNQKCSFCAIPSFKGK-LQSRELDSILKEVENLALKGYTDMTFIAQDS 197
++V Y++ GC C+FC +P F GK ++SR+++ +++EV+ G +
Sbjct: 167 ANV--YIETHRGCLGNCTFCQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGGTG 224
Query: 198 SSFLYDKG-QKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDM 256
S + + K +D +L+ + + + + + E++ AI++ I ++
Sbjct: 225 SLYAFKKSINRDKFFELLEKVSEVIGKNNLSVPDMRVDYVDEEILEAIKNYTIGWVFYG- 283
Query: 257 PIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIR--STIIVGHPEENESEFEELSA 314
I+ SD +LK M++ +++ K LDA+K K+ ++ + IV +P E E ++
Sbjct: 284 -IESGSDKILKDMKKGTNRE---KNLDAIKLAKDCGVKVAGSFIVAYPTETEMDYLLTKD 339
Query: 315 FLDEFQFDRLNIFAFSAE 332
F+ + + D ++F AE
Sbjct: 340 FIVDAELD--DVFVSIAE 355
>ref|NP_276299.1| (NC_000916) phosphonoacetaldehyde methylase [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||B69023 conserved hypothetical protein MTH1171 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85660.1| (AE000886) phosphonoacetaldehyde methylase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 438
Score = 59.3 bits (142), Expect = 9e-08
Identities = 47/193 (24%), Positives = 89/193 (45%), Gaps = 13/193 (6%)
Query: 136 ITGSSVHAYVKISEGCNQKCSFCAIPSFKGK-LQSRELDSILKEVENLALKGYTDMTFIA 194
I G+SV Y++ GC C+FC +P F G+ ++SR L I+ EV L G F
Sbjct: 152 IRGASV--YIETHRGCPGNCTFCQVPEFFGRNVRSRPLKDIIMEVRELKSSG--ARRFAI 207
Query: 195 QDSSSFLYDKGQKDGLIQ-----LIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPI 249
+ LY + G+ + L+R I + ++ + + + E++ AI S
Sbjct: 208 SGGTGTLYGSSKFRGIDEEAFRDLLRCISEVTGSRNLTVPDIRVDMVSPEILDAI--SEY 265
Query: 250 FQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENESEF 309
+ I+ S ML+KM++ + ++ ++ ++ + + IVG+P E++ ++
Sbjct: 266 TNGWVFYGIESGSRRMLRKMKKGITPDQVVEAVELAREYNLK-VAGSFIVGYPGEDDDDY 324
Query: 310 EELSAFLDEFQFD 322
+E DE D
Sbjct: 325 QETLELADELMLD 337
>pir||T10441 conserved hypothetical protein - Mycoplasma iowae
gb|AAC44030.1| (U29676) unknown [Mycoplasma iowae]
Length = 249
Score = 58.2 bits (139), Expect = 2e-07
Identities = 48/210 (22%), Positives = 95/210 (44%), Gaps = 14/210 (6%)
Query: 177 KEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSST 236
K+ + + L G ++ +++++F L+ I+K RI L P
Sbjct: 4 KKFKEIVLTGVNTAGYLDENNNTFF----------DLLNNINKLDGDFRVRISSLEPFQI 53
Query: 237 TLELIGAIESSPI-FQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAM--KQVKESFI 293
E+I + S+ F ++ + +Q SD +LKKM R + KL+ + K +F
Sbjct: 54 NDEIIDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFT 113
Query: 294 RSTIIVGHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIK 353
+ IVG P E + + ++ FL++ + ++IF +S NT + + + T R+K
Sbjct: 114 -TDYIVGFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKDINDSTKKDRVK 172
Query: 354 ALNKIALKHQNHSFKALLNKPIKALVENKE 383
+ K+ ++ + K + K + L E K+
Sbjct: 173 EITKLNYLNKKENLKKYIGKTCEVLFEKKK 202
>ref|NP_633546.1| (NC_003901) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
gb|AAM31218.1| (AE013386) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
Length = 374
Score = 47.8 bits (112), Expect = 3e-04
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 19/180 (10%)
Query: 141 VHAYVKISEGCNQKCSFCAIPSFKGK-LQSRELDSILKEVENLALKGYTDMTFIAQDSSS 199
+ A ++IS GC C +C P G+ ++ R +DSILK ++ Y D+ FIA ++ +
Sbjct: 142 LRAPIEISRGCPWGCKYCQTPRLFGREVRHRSIDSILKNAQH-----YNDLRFIASNAFA 196
Query: 200 FLYD--KGQKDGLIQLIRAIDKQQALKSARILY-LYPSSTTLELIGAIESSPIFQNY--- 253
+ D + D + +L+ A+ K L +I + +PS E + ES + + Y
Sbjct: 197 YGSDGIHPRFDKVEKLLSALHK---LPDKKIFFGTFPSEVRPEFV-TEESVELVRKYCAN 252
Query: 254 --FDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENESEFEE 311
+ Q SD +LK++RR + + ++ + + I G P E E + E+
Sbjct: 253 DSLSLGAQSGSDRILKEIRRGHTVEDSISAVECCLE-HDIMPAVDFIFGLPTETEEDQEK 311
>ref|NP_614081.1| (NC_003551) Predicted Fe-S oxidoreductase [Methanopyrus kandleri
AV19]
gb|AAM02011.1| (AE010371) Predicted Fe-S oxidoreductase [Methanopyrus kandleri
AV19]
Length = 435
Score = 47.8 bits (112), Expect = 3e-04
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 142 HAYVKISEGCNQKCSFCAIPSFKG-KLQSRELDSILKEVENLALKGYTDMTFIAQDSSSF 200
+ Y++ GC C+FC +P F G +++ + ++++L+EV L G F +
Sbjct: 165 NVYIETHRGCPGACTFCQVPEFFGRRVRWKPVEAVLEEVRELTRGG--ARRFAISGGTVT 222
Query: 201 LYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQH 260
Y ++D ++L++ + ++ + L+ AI I + + I+
Sbjct: 223 TYGDDEED-FVELLKRLADLLGRENVSAPDVRADLLNERLLEAIRDYTI--GWIFLGIES 279
Query: 261 ISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENESEFEELSAFLDEFQ 320
SD +L+ MR+ + + ++ + V + + IVG+P E E + E L E
Sbjct: 280 GSDRILRAMRKGITVDDVCEAVELARTVGVR-VAGSFIVGYPGETEDDLEATEELLTELN 338
Query: 321 FD 322
D
Sbjct: 339 LD 340
>ref|NP_248630.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
pir||C64502 hypothetical protein MJ1620 - Methanococcus jannaschii
gb|AAB99641.1| (U67602) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 505
Score = 47.4 bits (111), Expect = 3e-04
Identities = 61/270 (22%), Positives = 116/270 (42%), Gaps = 48/270 (17%)
Query: 91 IKELIPEVDIFTG---VGDYD-----KIDIMIAKKQNQFSEQVFLSEHYNARIITGSSVH 142
++E++ ++ + T + DY ++ + + + + F + L + + ++
Sbjct: 148 LREILTDLKLITPSTEIKDYKNYFSARVYVEVVRGCSNFKRPLLLCTNKKCNLCENGTLK 207
Query: 143 AYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFL- 201
+ I+ GC FC++PS G +SR+ + ILKEVE L +G + A D FL
Sbjct: 208 CPLNINPGCG----FCSVPSVFGYARSRDEEDILKEVEALLKEGVNRIVLSAPD---FLD 260
Query: 202 YDKGQKDGLIQLIRAIDKQQALKS-----ARILYLYPSSTTLELIGAIESSPIFQNYFDM 256
Y +G+K LI +A++S + Y ++ +E I A N F+
Sbjct: 261 YKRGEK--LINPYFPEPNYEAIESLLSKCKDLADKYNANVLIENIKA--------NLFNE 310
Query: 257 PIQHISDSMLKK---MRRNSSQAHHLKL----------LDAMKQVKESFIRSTI--IVGH 301
+ I LK + S +H KL L A+K K+ +++ + I G
Sbjct: 311 KVAEIFSKYLKTPIYIGCESGDKNHCKLLGRPTTPDDVLKAVKIAKKYNLKAQVYFIYGL 370
Query: 302 PEENESEFEELSAFLDEFQ--FDRLNIFAF 329
P ENE + F+ + + D++ ++ F
Sbjct: 371 PGENEETAKNTVNFMHKIKNYIDKITVYKF 400
>ref|NP_248493.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
pir||F64485 hypothetical protein MJ1487 - Methanococcus jannaschii
gb|AAB99497.1| (U67589) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 426
Score = 46.2 bits (108), Expect = 8e-04
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 144 YVKISEGCNQKCSFCAIPSFKG-KLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLY 202
+++I+ GC KC FC P G K++ R++++I K VE +A + D+ FI ++ +
Sbjct: 176 HIEITRGCPYKCYFCQTPRIFGKKIRHRDVENIYKYVEIMAERNLKDIRFITPNAFGY-- 233
Query: 203 DKGQKDGLIQLIRAIDK 219
G KDG I I+K
Sbjct: 234 --GSKDGKTLNIDKIEK 248
>ref|NP_348629.1| (NC_003030) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
gb|AAK79969.1|AE007705_3 (AE007705) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
Length = 472
Score = 45.8 bits (107), Expect = 0.001
Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 28/214 (13%)
Query: 117 KQNQFSEQVF----LSEHYNARIITGSSVHAYVKISEGCNQKCSFCAI-PSFKGKLQSRE 171
K+N ++V L++ YN I + Y+ SEGC KC+FC + G R
Sbjct: 189 KENYLLDEVLPNRDLTDKYNYTIPKVNKTIHYLSTSEGCTNKCNFCYLWKMTNGHFYHRS 248
Query: 172 LDSILKEVENL----ALKGYTDMTFIAQDSSSFLYDKGQKDGLIQ---LIRAIDKQQALK 224
+D+I++E++ + ++ TF + + L+++ ++GL + + + +K
Sbjct: 249 VDAIIQEIKKMDKYNVIRFCDANTFGDVNKAKVLFNRIIEEGLNRNHIYMGDVRTDTVVK 308
Query: 225 SARILYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDA 284
I+ L + I +E++ SD LK+ +++S + K L
Sbjct: 309 YPEIIELASKAGLRITICGLEAT--------------SDEELKEYGKDNSIENTKKALKI 354
Query: 285 MKQVKESFIRSTIIVGHPEENESEFEELSAFLDE 318
+ + ++ I+ P +E +FE + F+DE
Sbjct: 355 LNEA-NIYVNGNYII-KPSYDERDFERVGKFIDE 386
>ref|NP_229401.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||E72234 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36668.1|AE001804_12 (AE001804) conserved hypothetical protein [Thermotoga maritima]
Length = 551
Score = 45.8 bits (107), Expect = 0.001
Identities = 51/233 (21%), Positives = 95/233 (39%), Gaps = 27/233 (11%)
Query: 145 VKISEGCNQK--CSFCAIPSFKGKLQSRELDSILKEVENLALKGYTDMTF-IAQDSSSFL 201
+++S GC ++ CSFC P G+L+SR++ +ILKE+E+L G F A + +F
Sbjct: 178 IEVSRGCERRTFCSFCTEPLLHGRLKSRDVQAILKEIESLYRAGCRAFRFGRAANILAFG 237
Query: 202 YDKGQKDGLIQLIRAI--DKQQALKSARILYLYPSSTTLELIGAIESSPIFQ-------- 251
D+ +++ + ++ +L+ ++ + + E I +
Sbjct: 238 SDRNGGKPSPEILEELYSGTREVAPHLEVLHTDNANPSYLVTYEKECRKIVETIVRYNTP 297
Query: 252 -NYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRS--------TIIVGHP 302
+ F ++ +++LKK S LK + + ++ + +I G P
Sbjct: 298 GDVFSFGVESFDENVLKKNNVQGSPEEFLKAIAVVNEIGGVRVDGIPKLLPGVNLIFGLP 357
Query: 303 EENE----SEFEELSAFLDE-FQFDRLNIFAFSAEENTHAYSLEKVPKKTINA 350
E E + L LDE + R+NI A T Y K K I +
Sbjct: 358 GETEETLKKNYSYLKRILDEGYLLRRINIRKLLAYPGTPVYEYLKNKKHRIKS 410
>ref|NP_227997.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||A72408 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35275.1|AE001703_4 (AE001703) conserved hypothetical protein [Thermotoga maritima]
Length = 397
Score = 45.1 bits (105), Expect = 0.002
Identities = 52/233 (22%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 100 IFTGVGDYDKIDIMIAKKQNQF---SEQVFLSEHYNARIITGSSVHAYVKISEGCNQKCS 156
+FTG G+ + + ++ +++ F S++V L+ HY + ++ ++I+ GC C+
Sbjct: 97 VFTGDGEENILKFLMGERKKIFDGISKRVNLN-HYPP-FLPSKGIYMPIEITRGCPFSCA 154
Query: 157 FCAIPSFKG-KLQSRELDSILKEVENLALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIR 215
+C P G +++ R++D ++ + G FIA +S + G K+G+ +
Sbjct: 155 YCQTPIIAGRRVRHRDVDVVVHYAKLGVKHGRKLARFIAPNSFGY----GSKNGVTPNVE 210
Query: 216 AIDK-QQALKSARILYLY---------PSSTTLELIGAIESSPIFQNYFDMPIQHISDSM 265
I++ LK I +Y P S T E++ ++ + + Q SD +
Sbjct: 211 KIEELLYGLKKVGIEEIYFGTFPSEVRPESVTDEVLKVVKKY-VNNRSIVIGAQSGSDRI 269
Query: 266 LKKMRRNSSQAHHLKLLDAMKQVK-ESFI-RSTIIVGHPEENESEFEELSAFL 316
LK ++R + ++ +A++++ FI I G P E E + E+ +F+
Sbjct: 270 LKIIKRGHTVE---QVEEAIEKISLHGFIPHVDFIFGFPFETEEDVEKTFSFI 319
>emb|CAA72027.1| (Y11140) homology to M. leprae B2235_C2_195 and H. influenzae
GB:U00019_14 [Bacillus cereus]
Length = 226
Score = 44.3 bits (103), Expect = 0.003
Identities = 33/116 (28%), Positives = 56/116 (47%), Gaps = 8/116 (6%)
Query: 15 GCSKNLVDSEVMLG--KLYNYTLTNDAKSADVILINTCGFIESAKQESIQTI--LNAAKD 70
GC N D+EVM G Y T + ADV+L+NTC E+A+ + + L A K
Sbjct: 74 GCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGHLKALKR 133
Query: 71 KKEGAILIASGCLS--ERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQ 124
+ ++ GC+S E ++I + VD+ G + ++ ++ K FS++
Sbjct: 134 RNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYIL--KDAMFSKE 187
>ref|NP_615215.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM03695.1| (AE010682) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 373
Score = 44.3 bits (103), Expect = 0.003
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 141 VHAYVKISEGCNQKCSFCAIPSFKGK-LQSRELDSILKEVENLALKGYTDMTFIAQDSSS 199
+ A ++IS GC C +C P G+ ++ R +DS+LK + Y D+ FIA S++
Sbjct: 141 LRAPIEISRGCPWGCRYCQTPRLFGREVRHRSIDSVLKNA-----RYYDDLRFIA--SNA 193
Query: 200 FLYDKGQKDGLIQLIRAIDK----QQALKSARILY-LYPSSTTLELIGAIESSPIFQNY- 253
F Y DG+ ++K L +I + +PS E + ES + + Y
Sbjct: 194 FAYG---SDGIHPRFDKVEKLLSALHELPDKKIFFGTFPSEVRPEFV-TEESVELVRKYC 249
Query: 254 ----FDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENESEF 309
+ Q SD +LK++RR + + ++ + E I G P E E +
Sbjct: 250 ANDSLSLGAQSGSDRVLKEIRRGHTVEDSISAVECCLE-HEIAPAVDFIFGLPTETEEDQ 308
Query: 310 EE 311
E+
Sbjct: 309 EK 310
>ref|NP_562952.1| (NC_003366) probable coproporphyrinogen III oxidase [Clostridium
perfringens]
dbj|BAB81742.1| (AP003192) probable coproporphyrinogen III oxidase [Clostridium
perfringens]
Length = 377
Score = 43.5 bits (101), Expect = 0.005
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 151 CNQKCSFCAIPSF--KGKLQSRELDSILKEVENLALKGYT---DMTFIAQDSSSFLYDKG 205
C QKC +C PSF K L+ ++++ KE+ +L K + FI + S L
Sbjct: 13 CAQKCLYCDFPSFARKDHLRKAYIEALNKEIISLREKHNNLEINTIFIGGGTPSVL---- 68
Query: 206 QKDGLIQLIRAIDKQQALKSARI-LYLYPSSTTLELIGAIESSPIFQNYFDMPIQHISDS 264
+ D L L++ + K K + P + T E + ++ + N M +Q D+
Sbjct: 69 EADELECLLKEVAKLNMAKDIEYSMECNPGNLTEEKLEVMKKYGV--NRISMGLQAKQDN 126
Query: 265 MLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGHPEENESEFEELSAFLDEFQFDRL 324
+LK + R + + K+V + I ++ G P + +E+EE + + +
Sbjct: 127 LLKGLGRIHNYKTFKENFLLAKKVGFNNINVDLMFGLPNQRLNEWEETLREIISLEPAHI 186
Query: 325 NIFAFSAEENTHAYSL 340
+ ++ EE T Y+L
Sbjct: 187 SAYSLIIEEGTAFYNL 202
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,356,315
Number of Sequences: 1026957
Number of extensions: 10100484
Number of successful extensions: 31031
Number of sequences better than 1.0e-02: 162
Number of HSP's better than 0.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 30361
Number of HSP's gapped (non-prelim): 176
length of query: 439
length of database: 324,149,939
effective HSP length: 124
effective length of query: 315
effective length of database: 196,807,271
effective search space: 61994290365
effective search space used: 61994290365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 99 (42.7 bits)