BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645373|ref|NP_207547.1| hypothetical protein
[Helicobacter pylori 26695]
         (79 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207547.1|  (NC_000915) hypothetical protein [Helicoba...   147  3e-35
ref|NP_223409.1|  (NC_000921) putative [Helicobacter pylori ...   138  1e-32

>ref|NP_207547.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64614 hypothetical protein HP0754 - Helicobacter pylori (strain 26695)
 gb|AAD07810.1| (AE000588) H. pylori predicted coding region HP0754 [Helicobacter
          pylori 26695]
          Length = 79

 Score =  147 bits (371), Expect = 3e-35
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MNSPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60
          MNSPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE
Sbjct: 1  MNSPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60

Query: 61 KEELQLQMHKAKKIQKFLS 79
          KEELQLQMHKAKKIQKFLS
Sbjct: 61 KEELQLQMHKAKKIQKFLS 79



>ref|NP_223409.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71901 hypothetical protein jhp0691 - Helicobacter pylori (strain J99)
 gb|AAD06266.1| (AE001500) putative [Helicobacter pylori J99]
          Length = 79

 Score =  138 bits (348), Expect = 1e-32
 Identities = 74/79 (93%), Positives = 77/79 (96%)

Query: 1  MNSPNILLDSFKIALVKKDSKQAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60
          MNSP++LLDSFKIALVKKDSK AFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE
Sbjct: 1  MNSPDVLLDSFKIALVKKDSKLAFSLIERLSLEQIKSLDLDALLSLKEMIAQSIELLEKE 60

Query: 61 KEELQLQMHKAKKIQKFLS 79
          KEELQ QMHKAK+IQKFLS
Sbjct: 61 KEELQSQMHKAKQIQKFLS 79



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.131    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,392,818
Number of Sequences: 1026957
Number of extensions: 1017329
Number of successful extensions: 7771
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7769
Number of HSP's gapped (non-prelim): 2
length of query: 79
length of database: 324,149,939
effective HSP length: 55
effective length of query: 24
effective length of database: 267,667,304
effective search space: 6424015296
effective search space used: 6424015296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 90 (39.3 bits)