BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645380|ref|NP_207554.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207554.1| (NC_000915) hypothetical protein [Helicoba... 408 e-113
ref|NP_223416.1| (NC_000921) putative [Helicobacter pylori ... 383 e-106
ref|NP_282355.1| (NC_002163) hypothetical protein Cj1208 [C... 65 4e-10
ref|NP_253915.1| (NC_002516) conserved hypothetical protein... 51 9e-06
gb|AAG10441.1|AF279106_3 (AF279106) predicted 5-formyltetra... 47 1e-04
ref|NP_104943.1| (NC_002678) hypothetical protein [Mesorhiz... 47 1e-04
ref|NP_603799.1| (NC_003454) 5-formyltetrahydrofolate cyclo... 47 2e-04
ref|NP_347724.1| (NC_003030) 5-formyltetrahydrofolate cyclo... 47 2e-04
ref|NP_110036.1| (NC_000912) 5-formyl tetrahydrofolate cycl... 45 6e-04
ref|NP_214187.1| (NC_000918) hypothetical protein [Aquifex ... 45 6e-04
sp|P80405|FTHC_RABIT 5-formyltetrahydrofolate cyclo-ligase ... 44 0.001
ref|NP_232108.1| (NC_002505) conserved hypothetical protein... 44 0.001
ref|NP_384181.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 44 0.001
ref|NP_102175.1| (NC_002678) hypothetical protein [Mesorhiz... 43 0.002
>ref|NP_207554.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64615 hypothetical protein HP0761 - Helicobacter pylori (strain 26695)
gb|AAD07811.1| (AE000588) H. pylori predicted coding region HP0761 [Helicobacter
pylori 26695]
Length = 200
Score = 408 bits (1049), Expect = e-113
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MACKLLFWKLKDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFT 60
MACKLLFWKLKDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFT
Sbjct: 1 MACKLLFWKLKDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFT 60
Query: 61 IAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK 120
IAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK
Sbjct: 61 IAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK 120
Query: 121 RRLKRPLIVFVSRELAIANGVLTNAYDIEADLYMNARIVVKNNKRKHYEQRVNLHFIRSL 180
RRLKRPLIVFVSRELAIANGVLTNAYDIEADLYMNARIVVKNNKRKHYEQRVNLHFIRSL
Sbjct: 121 RRLKRPLIVFVSRELAIANGVLTNAYDIEADLYMNARIVVKNNKRKHYEQRVNLHFIRSL 180
Query: 181 GSVFDYRSSHVLCDEKDLLR 200
GSVFDYRSSHVLCDEKDLLR
Sbjct: 181 GSVFDYRSSHVLCDEKDLLR 200
>ref|NP_223416.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71899 hypothetical protein jhp0698 - Helicobacter pylori (strain J99)
gb|AAD06273.1| (AE001501) putative [Helicobacter pylori J99]
Length = 200
Score = 383 bits (983), Expect = e-106
Identities = 183/200 (91%), Positives = 196/200 (97%)
Query: 1 MACKLLFWKLKDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFT 60
MACKLLFWKLKDYQNILLYSPLGHELDIRPLI +LRQKNK VWLPKSIKKGAHFSKE FT
Sbjct: 1 MACKLLFWKLKDYQNILLYSPLGHELDIRPLILKLRQKNKRVWLPKSIKKGAHFSKEGFT 60
Query: 61 IAPFRLPLRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK 120
IAPFRLPLRRLGWFDEPSLSRYYK+ELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQL K
Sbjct: 61 IAPFRLPLRRLGWFDEPSLSRYYKRELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLFK 120
Query: 121 RRLKRPLIVFVSRELAIANGVLTNAYDIEADLYMNARIVVKNNKRKHYEQRVNLHFIRSL 180
++LKRPL++FVSRELA+ANG+LT+AYDIEA+LYMNARIV+KNNKRKHYEQRVNLHFIRSL
Sbjct: 121 KQLKRPLVIFVSRELALANGILTDAYDIEANLYMNARIVMKNNKRKHYEQRVNLHFIRSL 180
Query: 181 GSVFDYRSSHVLCDEKDLLR 200
GSVFD+RS+HVLCDEKDLLR
Sbjct: 181 GSVFDHRSNHVLCDEKDLLR 200
>ref|NP_282355.1| (NC_002163) hypothetical protein Cj1208 [Campylobacter jejuni]
pir||B81327 hypothetical protein Cj1208 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73462.1| (AL139077) hypothetical protein Cj1208 [Campylobacter jejuni]
Length = 208
Score = 65.1 bits (157), Expect = 4e-10
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 9 KLKDYQNILLYSPLGHELDIRPLIFR-LRQKNKCVWLPKSIKKGAHFSKESFTIAPFRLP 67
KL +NIL++ PL +E ++ + FR + KN +++P +S I RLP
Sbjct: 37 KLFKAKNILIFIPLHYEPNL--IKFRHILNKNYKLFVP-------FMQDKSLKIVKLRLP 87
Query: 68 LRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPL 127
+ + + ++K ++D +VP++G+D + +R+G G G YDR L +P
Sbjct: 88 FIKKRFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENL----NYKPH 143
Query: 128 IVFVSRELAIANGVLTNAYDIEADLYMN--ARIVVKNNKRKHYEQRVNLHFIRSLGSVFD 185
I+F+ A++ LT +DI LY+N + K K R + R+ +F
Sbjct: 144 IIFIQSIDALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFS 203
Query: 186 YRSS 189
+ +
Sbjct: 204 CKKN 207
>ref|NP_253915.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||D82993 conserved hypothetical protein PA5228 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08613.1|AE004935_10 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 203
Score = 50.8 bits (120), Expect = 9e-06
Identities = 39/152 (25%), Positives = 73/152 (47%), Gaps = 31/152 (20%)
Query: 14 QNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPF---RLPLRR 70
++I LY P E+D RPL+ +++ K +LP +AP+ R+ +R
Sbjct: 49 RHIALYLPNDGEIDPRPLLRAAQKRGKATYLP--------------VLAPWPRTRMVFQR 94
Query: 71 LGWFDEPSLSRYYKQE-------------LDCIVVPILGMDTSFRRVGFGLGMYDRSLPQ 117
+G + + +R+ E LD +++P++G D R+G G G YDRSL
Sbjct: 95 VGSGERWTRNRFRISEPLADAGRQRKAWALDLVLLPLVGFDEQGGRLGMGGGFYDRSLAY 154
Query: 118 LLKRRL-KRPLIVFVSRELAIANGVLTNAYDI 148
L +R+ +P ++ ++ E + + ++DI
Sbjct: 155 LARRKNGHKPTLIGLAHECQKVDRLALASWDI 186
>gb|AAG10441.1|AF279106_3 (AF279106) predicted 5-formyltetrahydrofolate cyclo-ligase
[uncultured proteobacterium EBAC31A08]
Length = 191
Score = 47.4 bits (111), Expect = 1e-04
Identities = 35/142 (24%), Positives = 67/142 (46%), Gaps = 7/142 (4%)
Query: 12 DYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPFR--LPLR 69
+ QNI LY P +E++ LI + K +++PK I +F + + +
Sbjct: 41 EMQNIALYFPFRNEVNTNLLIQAFTKLKKNIYIPKVIDD----EMMAFNLLDEQPNFFIN 96
Query: 70 RLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPLIV 129
+ G + S E+D + +P+ G+D + R+G+G G +DR + + + RPL+V
Sbjct: 97 QFGIKEVKSEDYVNINEIDLMFIPMTGVDLNGYRLGYGSGYFDRIIGS-INEEVSRPLLV 155
Query: 130 FVSRELAIANGVLTNAYDIEAD 151
+ + I N +D++ D
Sbjct: 156 GLCYQYQICNMHFGEKHDLKYD 177
>ref|NP_104943.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB50729.1| (AP003003) hypothetical protein [Mesorhizobium loti]
Length = 195
Score = 47.0 bits (110), Expect = 1e-04
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 21 PLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPF-RLPLRRLGWFDEPSL 79
P+ E+D+RPL+F LR++ + LP + K +E AP + +G +E +
Sbjct: 55 PMRSEVDVRPLMFALREQGARLCLPAILDKTTIVFRELVRGAPMVDMGFGTVGPHEEAEV 114
Query: 80 SRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKR 121
+ + ++VP+ D R+G+G G YDR++ +L+ +
Sbjct: 115 L-----DPEVMLVPLAAFDARGHRIGYGAGYYDRAIAKLVDK 151
>ref|NP_603799.1| (NC_003454) 5-formyltetrahydrofolate cyclo-ligase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95098.1| (AE010598) 5-formyltetrahydrofolate cyclo-ligase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 181
Score = 46.6 bits (109), Expect = 2e-04
Identities = 36/154 (23%), Positives = 68/154 (43%), Gaps = 16/154 (10%)
Query: 11 KDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHF---SKESFTIAPFRLP 67
K+ + ++ Y +E+ + ++ K + LPK + K K + ++PF
Sbjct: 41 KNVKTVMSYMDFKNEVKTDRINTFIKNSGKILVLPKVVDKETMIVIEDKNQYIVSPFGNK 100
Query: 68 LRRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPL 127
EP YK +D I+ P + D RVGFG G YDR +K+ + +
Sbjct: 101 --------EPD-GEEYKGSIDVIITPGVAFDRDKNRVGFGRGYYDRF---FVKQPNAKKI 148
Query: 128 IVFVSRELAIANGVLTNAYDIEADLYMNARIVVK 161
+ +++ I G+ T+ YD + D+ + ++K
Sbjct: 149 AIAFEKQI-IDEGIETDKYDKKVDILITEDEIIK 181
>ref|NP_347724.1| (NC_003030) 5-formyltetrahydrofolate cyclo-ligase [Clostridium
acetobutylicum]
gb|AAK79064.1|AE007625_8 (AE007625) 5-formyltetrahydrofolate cyclo-ligase [Clostridium
acetobutylicum]
Length = 182
Score = 46.6 bits (109), Expect = 2e-04
Identities = 42/151 (27%), Positives = 66/151 (42%), Gaps = 25/151 (16%)
Query: 11 KDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPFRLPLRR 70
K NI ++ E+D +I K V++PK I K ++ A R
Sbjct: 42 KSANNIFVFVSYKSEVDTHNIIRTAIADGKKVFVPKVISK-----EKGMEAAEIR----- 91
Query: 71 LGWFD---------EPSLSRYYKQE-LDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK 120
G+FD EP S Y + E ++ ++VP L D S R+G+G G YDR + L K
Sbjct: 92 -GFFDLEKSAYGILEPKSSNYIEPESIELLLVPGLAFDESGGRIGYGGGFYDRYMSLLDK 150
Query: 121 RRLKRPLIVFVSRELAIANGVLTNAYDIEAD 151
+K V + + + + V+ N D+ D
Sbjct: 151 SAVK----VGICYDFQVIDKVIMNINDVPVD 177
>ref|NP_110036.1| (NC_000912) 5-formyl tetrahydrofolate cyclo-ligase (HI0858) homolog
[Mycoplasma pneumoniae]
sp|P75430|Y245_MYCPN Hypothetical protein MG245 homolog (H91_orf164)
pir||S73814 probable 5-formyl tetrahydrofolate cyclo-ligase HI0858 - Mycoplasma
pneumoniae (strain ATCC 29342)
gb|AAB96136.1| (AE000047) 5-formyl tetrahydrofolate cyclo-ligase (HI0858) homolog;
similar to GenBank Accession Number D64160, from H.
influenzae [Mycoplasma pneumoniae]
Length = 164
Score = 44.7 bits (104), Expect = 6e-04
Identities = 22/82 (26%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Query: 74 FDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPLIVFVSR 133
F + + + ++DC ++P++G + R+GFG G YDR L QL +++ K + +
Sbjct: 86 FIDQETNTFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPKIGIAYSFQK 145
Query: 134 ELAIANGVLTNAYDIEADLYMN 155
L + +D++ DL +N
Sbjct: 146 -----GDFLADPWDVQLDLIIN 162
>ref|NP_214187.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||C70449 conserved hypothetical protein aq_1731 - Aquifex aeolicus
gb|AAC07587.1| (AE000753) hypothetical protein [Aquifex aeolicus]
Length = 186
Score = 44.7 bits (104), Expect = 6e-04
Identities = 42/151 (27%), Positives = 71/151 (46%), Gaps = 10/151 (6%)
Query: 9 KLKDYQNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPFRLPL 68
+ K + + LY P+ E+D+ PL + ++ + + LPK +G S +P L +
Sbjct: 38 EFKKSKKVALYCPIKGEVDLTPLFPEVLKEKELI-LPKV--EGNEISLYRVH-SPACLGV 93
Query: 69 RRLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPLI 128
G + R +++D I VP + D R+GFG G YDR LLKR + L
Sbjct: 94 GAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDR----LLKR--VKGLK 147
Query: 129 VFVSRELAIANGVLTNAYDIEADLYMNARIV 159
V V+ + + +A+DI D+ + + V
Sbjct: 148 VGVAYSFQVFERLPRDAWDIPVDVLVTEKNV 178
>sp|P80405|FTHC_RABIT 5-formyltetrahydrofolate cyclo-ligase
(5,10-methenyl-tetrahydrofolate synthetase)
(Methenyl-THF synthetase) (MTHFS)
pir||A53688 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) - rabbit
gb|AAB31354.1| 5,10-methenyltetrahydrofolate synthetase, methenyl-THF synthetase
[rabbits, liver, Peptide, 201 aa]
Length = 201
Score = 43.9 bits (102), Expect = 0.001
Identities = 37/151 (24%), Positives = 68/151 (44%), Gaps = 8/151 (5%)
Query: 14 QNILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPFRLPLRRLGW 73
Q I ++ + E++ +I + Q+ K ++P+ + H A L + W
Sbjct: 50 QRISIFLSMPDEIETEEIIKDIFQQGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSW 109
Query: 74 -FDEPSLSRYYKQEL-----DCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPL 127
+PS S ++ L D I +P LG D + R+G G G YD L + L+++ +P
Sbjct: 110 NIHQPSESDTREEALATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQRCLQQQGAKPY 169
Query: 128 IVFVSRELAIANGVLTNAYDIEAD--LYMNA 156
+ ++ I V + D+ D LY++A
Sbjct: 170 TIALAFREQICPQVPVDDTDVSVDEVLYVDA 200
>ref|NP_232108.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82072 conserved hypothetical protein VC2479 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95621.1| (AE004317) conserved hypothetical protein [Vibrio cholerae]
Length = 194
Score = 43.9 bits (102), Expect = 0.001
Identities = 40/112 (35%), Positives = 51/112 (44%), Gaps = 8/112 (7%)
Query: 14 QNILLYSPLGHELDIRPLIFRLRQKNKCVWLP--KSIKKGAHFSKESFTIAPFRLPLRRL 71
Q I LY EL+ +PLI L Q+ K V+LP KG T P R
Sbjct: 45 QRIALYLANDGELNTQPLIEWLWQQGKQVYLPVLHPFAKGHLLFLHYHTHTPMNK--NRY 102
Query: 72 GWFDEPSLSRYY---KQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLK 120
G EP L + +ELD I P++ D S +R+G G G YDR+L K
Sbjct: 103 G-IAEPKLDQRLICPVRELDIIGTPLVAFDQSGQRLGMGGGYYDRTLAPWFK 153
>ref|NP_384181.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41462.1| (AL591782) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 222
Score = 43.5 bits (101), Expect = 0.001
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 16 ILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKGAHFSKESFTIAPFRL--PLRRL-- 71
+ +Y P E D+RPL+ ++ LP ++KG FR+ P +L
Sbjct: 84 VSVYWPFRGEPDLRPLMRQIADDGGQCALPVVVEKGRPLE--------FRIWRPGDKLIR 135
Query: 72 GWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRR 122
G ++ P +R D +V P++G D S R+G+G G YDR+L + R
Sbjct: 136 GIWNIPVPARLVSCTPDIVVAPVVGFDPSCYRLGYGGGYYDRTLATMAATR 186
>ref|NP_102175.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB47961.1| (AP002994) hypothetical protein [Mesorhizobium loti]
Length = 197
Score = 43.1 bits (100), Expect = 0.002
Identities = 36/142 (25%), Positives = 64/142 (44%), Gaps = 20/142 (14%)
Query: 16 ILLYSPLGHELDIRPLIFRLRQKNKCVWLPKSIKKG------AHFSKESFTIAPFRLPLR 69
+ LY P E D+RP + + + LP ++KG A+ + + +P+
Sbjct: 64 VSLYWPFRGEPDLRPWMASINEHGGRTALPIVVEKGHPLIFRAYKPGDRLEKGVWNIPIP 123
Query: 70 RLGWFDEPSLSRYYKQELDCIVVPILGMDTSFRRVGFGLGMYDRSLPQLLKRRLKRPLIV 129
G +P L D ++ PI+G+D + R+G+G G +DR+L + +PL++
Sbjct: 124 AEG---DPVLP-------DIVIAPIVGIDPANYRLGYGGGFFDRTLAAM----PFKPLVI 169
Query: 130 FVSRELAIANGVLTNAYDIEAD 151
V EL + +DI D
Sbjct: 170 GVGYELQRIATICPQPHDIPMD 191
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.328 0.144 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,339,772
Number of Sequences: 1026957
Number of extensions: 5104607
Number of successful extensions: 11482
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11469
Number of HSP's gapped (non-prelim): 14
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 94 (40.8 bits)