BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645381|ref|NP_207555.1| hypothetical protein
[Helicobacter pylori 26695]
(185 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207555.1| (NC_000915) hypothetical protein [Helicoba... 369 e-102
ref|NP_223417.1| (NC_000921) putative [Helicobacter pylori ... 334 3e-91
ref|NP_282354.1| (NC_002163) putative lipoprotein thiredoxi... 46 2e-04
>ref|NP_207555.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64615 hypothetical protein HP0762 - Helicobacter pylori (strain 26695)
gb|AAD07812.1| (AE000588) H. pylori predicted coding region HP0762 [Helicobacter
pylori 26695]
Length = 185
Score = 369 bits (947), Expect = e-102
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MRIKAYFLRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITG 60
MRIKAYFLRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITG
Sbjct: 1 MRIKAYFLRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITG 60
Query: 61 DLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIK 120
DLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIK
Sbjct: 61 DLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIK 120
Query: 121 DFSAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKHQLIKMYQGIVPIEMLQFDI 180
DFSAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKHQLIKMYQGIVPIEMLQFDI
Sbjct: 121 DFSAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKHQLIKMYQGIVPIEMLQFDI 180
Query: 181 SNLKD 185
SNLKD
Sbjct: 181 SNLKD 185
>ref|NP_223417.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71899 hypothetical protein jhp0699 - Helicobacter pylori (strain J99)
gb|AAD06274.1| (AE001501) putative [Helicobacter pylori J99]
Length = 185
Score = 334 bits (856), Expect = 3e-91
Identities = 168/185 (90%), Positives = 173/185 (92%)
Query: 1 MRIKAYFLRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMDLNNQEYTITG 60
MRIKAYFLRFIALV IVLLGFSACKNSQKSQDSQNNT QQDSPKTYTAMDLNNQEYTI G
Sbjct: 1 MRIKAYFLRFIALVFIVLLGFSACKNSQKSQDSQNNTTQQDSPKTYTAMDLNNQEYTIMG 60
Query: 61 DLDSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIK 120
DLDSLNISPD NTPTLL+LSALDNSLKDYAP+FN+LKKTFKDRLRVLILLN+PYSSDAIK
Sbjct: 61 DLDSLNISPDPNTPTLLILSALDNSLKDYAPTFNVLKKTFKDRLRVLILLNQPYSSDAIK 120
Query: 121 DFSAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKHQLIKMYQGIVPIEMLQFDI 180
F A Q DLMILNPKDTALFDHL +DALNHSFNMLLY KHQLIKMYQGIVP EMLQFDI
Sbjct: 121 GFIAPSQTDLMILNPKDTALFDHLNHDALNHSFNMLLYDKHQLIKMYQGIVPAEMLQFDI 180
Query: 181 SNLKD 185
SNLKD
Sbjct: 181 SNLKD 185
>ref|NP_282354.1| (NC_002163) putative lipoprotein thiredoxin [Campylobacter jejuni]
pir||A81327 probable lipoprotein thiredoxin Cj1207c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73461.1| (AL139077) putative lipoprotein thiredoxin [Campylobacter jejuni]
Length = 185
Score = 45.8 bits (107), Expect = 2e-04
Identities = 38/179 (21%), Positives = 77/179 (42%), Gaps = 7/179 (3%)
Query: 8 LRFIALVLIVLLGFSACKNSQKSQDSQNNTPQQDSPKTYTAMD-----LNNQEYTITGDL 62
++ I L++ + F AC N ++ Q + N + S M+ ++ ++ +
Sbjct: 3 IKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDMNFKLNLIDGGSISVKKEN 62
Query: 63 DSLNISPDSNTPTLLVLSALDNSLKDYAPSFNILKKTFKDRLRVLILLNKPYSSDAIKDF 122
LN + + + + P N L++ + + ++ +L + S+D I+ F
Sbjct: 63 AVLNFNDEDKVTLFVFFTTWCTPCIAEIPHLNKLQEKYNNDFNIVGVLLEDKSNDEIQKF 122
Query: 123 SAHFQADLMILNPKDTALFDHLKYDALNHSFNMLLYHKH-QLIKMYQGIVPIEMLQFDI 180
+ + N ++ L +N M LY+KH +LI Y G++P EML+ DI
Sbjct: 123 IEQHKISYKVANGENNYLLAKA-LGGVNGIPTMFLYNKHSKLINQYLGLIPEEMLEIDI 180
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,826,470
Number of Sequences: 1026957
Number of extensions: 4383910
Number of successful extensions: 12575
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12573
Number of HSP's gapped (non-prelim): 3
length of query: 185
length of database: 324,149,939
effective HSP length: 114
effective length of query: 71
effective length of database: 207,076,841
effective search space: 14702455711
effective search space used: 14702455711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)