BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645383|ref|NP_207557.1| hypothetical protein [Helicobacter pylori 26695] (428 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207557.1|  (NC_000915) hypothetical protein [Helicoba...   850  0.0
ref|NP_223419.1|  (NC_000921) putative [Helicobacter pylori ...   199  7e-50
ref|NP_223420.1|  (NC_000921) putative [Helicobacter pylori ...   197  2e-49
ref|NP_223421.1|  (NC_000921) putative [Helicobacter pylori ...    94  3e-18

>ref|NP_207557.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64615 hypothetical protein HP0764 - Helicobacter pylori (strain 26695)
 gb|AAD07813.1| (AE000588) H. pylori predicted coding region HP0764 [Helicobacter
           pylori 26695]
          Length = 428

 Score =  850 bits (2196), Expect = 0.0
 Identities = 428/428 (100%), Positives = 428/428 (100%)

Query: 1   MPLPFIIAAGVALVAAGYGVKKKVDADILSEETNEYIKYINEGNDLLEEAEEVIKAVASD 60
           MPLPFIIAAGVALVAAGYGVKKKVDADILSEETNEYIKYINEGNDLLEEAEEVIKAVASD
Sbjct: 1   MPLPFIIAAGVALVAAGYGVKKKVDADILSEETNEYIKYINEGNDLLEEAEEVIKAVASD 60

Query: 61  CEFALARFEEKRCYIRNHVISEFLHHFNQLEGFELTNKKDSMENIQLDVSNTLKIIDKNL 120
           CEFALARFEEKRCYIRNHVISEFLHHFNQLEGFELTNKKDSMENIQLDVSNTLKIIDKNL
Sbjct: 61  CEFALARFEEKRCYIRNHVISEFLHHFNQLEGFELTNKKDSMENIQLDVSNTLKIIDKNL 120

Query: 121 KMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKKLEDAK 180
           KMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKKLEDAK
Sbjct: 121 KMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFGALRAAEMEKKLEDAK 180

Query: 181 AYCSQVEAAVKKADAMIDNLQAVRKMADLFTRQITKFDALFFSLAQEAIATMKKHNYDFS 240
           AYCSQVEAAVKKADAMIDNLQAVRKMADLFTRQITKFDALFFSLAQEAIATMKKHNYDFS
Sbjct: 181 AYCSQVEAAVKKADAMIDNLQAVRKMADLFTRQITKFDALFFSLAQEAIATMKKHNYDFS 240

Query: 241 HYNQKEQDQLATASSTLKTLGAFLKVPIMDKHQKLNEATQSKLEFMQREMSSLEAKHYDS 300
           HYNQKEQDQLATASSTLKTLGAFLKVPIMDKHQKLNEATQSKLEFMQREMSSLEAKHYDS
Sbjct: 241 HYNQKEQDQLATASSTLKTLGAFLKVPIMDKHQKLNEATQSKLEFMQREMSSLEAKHYDS 300

Query: 301 VKIKFGLVRRLFEFFRSLWGKNGRIQRAKTTPDRFPCTSCGLCCKNIAGIIELIGFDAGN 360
           VKIKFGLVRRLFEFFRSLWGKNGRIQRAKTTPDRFPCTSCGLCCKNIAGIIELIGFDAGN
Sbjct: 301 VKIKFGLVRRLFEFFRSLWGKNGRIQRAKTTPDRFPCTSCGLCCKNIAGIIELIGFDAGN 360

Query: 361 GVCKFLDLETNLCKIYESRPLICRIDEAHKKLYPHIPLKEFYAKNAEVCNALQEANHMDK 420
           GVCKFLDLETNLCKIYESRPLICRIDEAHKKLYPHIPLKEFYAKNAEVCNALQEANHMDK
Sbjct: 361 GVCKFLDLETNLCKIYESRPLICRIDEAHKKLYPHIPLKEFYAKNAEVCNALQEANHMDK 420

Query: 421 SFRVILKK 428
           SFRVILKK
Sbjct: 421 SFRVILKK 428

>ref|NP_223419.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71899 hypothetical protein jhp0701 - Helicobacter pylori (strain J99)
 gb|AAD06276.1| (AE001501) putative [Helicobacter pylori J99]
          Length = 117

 Score =  199 bits (505), Expect = 7e-50
 Identities = 92/102 (90%), Positives = 96/102 (93%)

Query: 327 RAKTTPDRFPCTSCGLCCKNIAGIIELIGFDAGNGVCKFLDLETNLCKIYESRPLICRID 386
           + +TT DRFPCTSCGLCCKNI GIIEL+GFDAGNGVCKFLDLETNLCKIYESRPLICRID
Sbjct: 16  KKRTTLDRFPCTSCGLCCKNITGIIELVGFDAGNGVCKFLDLETNLCKIYESRPLICRID 75

Query: 387 EAHKKLYPHIPLKEFYAKNAEVCNALQEANHMDKSFRVILKK 428
           EAHKKLY HIPLKEFYAKNAEVCNALQEAN MDKSFRVI+ K
Sbjct: 76  EAHKKLYSHIPLKEFYAKNAEVCNALQEANRMDKSFRVIITK 117

>ref|NP_223420.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71899 hypothetical protein jhp0702 - Helicobacter pylori (strain J99)
 gb|AAD06277.1| (AE001501) putative [Helicobacter pylori J99]
          Length = 168

 Score =  197 bits (502), Expect = 2e-49
 Identities = 103/152 (67%), Positives = 117/152 (76%)

Query: 154 GLLAGPTLAIFGALRAAEMEKKLEDAKAYCSQVEAAVKKADAMIDNLQAVRKMADLFTRQ 213
           GL   P LAI GA+ A EMEKK +DAKAY SQVE AVKKAD +IDNLQAV+KMADLFTRQ
Sbjct: 3   GLFVAPVLAILGAISADEMEKKRDDAKAYYSQVEVAVKKADVVIDNLQAVKKMADLFTRQ 62

Query: 214 ITKFDALFFSLAQEAIATMKKHNYDFSHYNQKEQDQLATASSTLKTLGAFLKVPIMDKHQ 273
           ITKFDALFF L+Q+AIATMKKH+YD S YNQKE+DQL    STL +L AFLK PIMDKHQ
Sbjct: 63  ITKFDALFFLLSQDAIATMKKHHYDTSRYNQKEKDQLCVTVSTLFSLSAFLKAPIMDKHQ 122

Query: 274 KLNEATQSKLEFMQREMSSLEAKHYDSVKIKF 305
           KLN+  Q  L  M+ +M SLE  +Y    I+F
Sbjct: 123 KLNKKAQKALNLMRDQMDSLENGNYSLDGIRF 154

>ref|NP_223421.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71899 hypothetical protein jhp0703 - Helicobacter pylori (strain J99)
 gb|AAD06278.1| (AE001501) putative [Helicobacter pylori J99]
          Length = 286

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 61/167 (36%), Positives = 94/167 (55%), Gaps = 10/167 (5%)

Query: 1   MPLPFIIAAGVALVAAGYGVKKKVDADILSEETNEYIKYINEGNDLLEEAEEVIKAVASD 60
           MPLPFI+  G+ALVAAGYGVKK +DA     E +E+IK   +   L EEA +  ++  SD
Sbjct: 106 MPLPFILG-GLALVAAGYGVKKGIDALDADCEADEFIK---KAESLKEEATKKAESAESD 161

Query: 61  CEFALARFEEKRCYIRNHVISEFLHHFNQLEGFELT--NKKDSMENIQLDVSNTLKIIDK 118
           C  A  R  EK+ ++ +H +S FL HF++L    +T   K   M++++  +SN   ++++
Sbjct: 162 CRRAFMRLGEKKLHVLSHTVSNFLDHFHRLNRLRITIGIKDIDMQDLRKQISNARNLLNQ 221

Query: 119 NLKMSSFDTLGAVGNVVGGFSMGFGLAAGGIVGSVGLLAGPTLAIFG 165
            L  +  D   A+G + G   +G   A+G   G+ G + G  LA  G
Sbjct: 222 -LNTNGIDGDSALGVIAGCGGLG---ASGFTAGATGAVLGGGLAASG 264

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,615,953
Number of Sequences: 1026957
Number of extensions: 9792624
Number of successful extensions: 47061
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47055
Number of HSP's gapped (non-prelim): 5
length of query: 428
length of database: 324,149,939
effective HSP length: 124
effective length of query: 304
effective length of database: 196,807,271
effective search space: 59829410384
effective search space used: 59829410384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)