BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645384|ref|NP_207558.1| hypothetical protein
[Helicobacter pylori 26695]
         (102 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207558.1|  (NC_000915) hypothetical protein [Helicoba...   197  1e-50
ref|NP_223421.1|  (NC_000921) putative [Helicobacter pylori ...   137  3e-32

>ref|NP_207558.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64615 hypothetical protein HP0765 - Helicobacter pylori (strain 26695)
 gb|AAD07814.1| (AE000588) H. pylori predicted coding region HP0765 [Helicobacter
           pylori 26695]
          Length = 102

 Score =  197 bits (502), Expect = 1e-50
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MEEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSL 60
           MEEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSL
Sbjct: 1   MEEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSL 60

Query: 61  IYRHEYLIDASDLSREQKKTAHAELQKSINENLEALRNIINI 102
           IYRHEYLIDASDLSREQKKTAHAELQKSINENLEALRNIINI
Sbjct: 61  IYRHEYLIDASDLSREQKKTAHAELQKSINENLEALRNIINI 102



>ref|NP_223421.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71899 hypothetical protein jhp0703 - Helicobacter pylori (strain J99)
 gb|AAD06278.1| (AE001501) putative [Helicobacter pylori J99]
          Length = 286

 Score =  137 bits (344), Expect = 3e-32
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 1  MEEQKDMGQSVILTKVLESLENGGSFNQRDREKFAQAARTHGVEDSVIEEIIDIGQTLSL 60
          M++ +D+    I+T V++SLE GGSF+  DR KF QAARTHG+EDSVIEEIIDIGQTLSL
Sbjct: 1  MDKNRDV--HAIMTNVIKSLERGGSFSSSDRAKFVQAARTHGIEDSVIEEIIDIGQTLSL 58

Query: 61 IYRHEYLIDASDLSREQKKTAHAELQKSINENLEALR 97
          IYRHE LIDASDL REQKK  HAELQKSI+ENLE L+
Sbjct: 59 IYRHEDLIDASDLPREQKKAVHAELQKSIDENLEVLK 95



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.312    0.130    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,057,757
Number of Sequences: 1026957
Number of extensions: 1762160
Number of successful extensions: 4350
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4348
Number of HSP's gapped (non-prelim): 2
length of query: 102
length of database: 324,149,939
effective HSP length: 78
effective length of query: 24
effective length of database: 244,047,293
effective search space: 5857135032
effective search space used: 5857135032
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 90 (39.3 bits)