BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645385|ref|NP_207559.1| hypothetical protein
[Helicobacter pylori 26695]
(274 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207559.1| (NC_000915) hypothetical protein [Helicoba... 543 e-154
ref|NP_223422.1| (NC_000921) putative [Helicobacter pylori ... 184 9e-46
>ref|NP_207559.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64615 hypothetical protein HP0766 - Helicobacter pylori (strain 26695)
gb|AAD07815.1| (AE000588) H. pylori predicted coding region HP0766 [Helicobacter
pylori 26695]
Length = 274
Score = 543 bits (1400), Expect = e-154
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MLENMQDISLQSSHEVGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMRDAKD 60
MLENMQDISLQSSHEVGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMRDAKD
Sbjct: 1 MLENMQDISLQSSHEVGVDITESKMLTKFASSLLMNLYEYIGNGKDPKEASDHAMRDAKD 60
Query: 61 VVLSCGRVAFLKDIVSNSPNETIQSFDGDLEVAMHLEKIGIECYKIFIDYGSQKIDDNEL 120
VVLSCGRVAFLKDIVSNSPNETIQSFDGDLEVAMHLEKIGIECYKIFIDYGSQKIDDNEL
Sbjct: 61 VVLSCGRVAFLKDIVSNSPNETIQSFDGDLEVAMHLEKIGIECYKIFIDYGSQKIDDNEL 120
Query: 121 SCRLLHTGTKILGTKAMAVVGQTFIPIPGVGAIIGNFVGALLSKTLCENLRDVLKEAKLA 180
SCRLLHTGTKILGTKAMAVVGQTFIPIPGVGAIIGNFVGALLSKTLCENLRDVLKEAKLA
Sbjct: 121 SCRLLHTGTKILGTKAMAVVGQTFIPIPGVGAIIGNFVGALLSKTLCENLRDVLKEAKLA 180
Query: 181 RQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERALYAGDADLAI 240
RQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERALYAGDADLAI
Sbjct: 181 RQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERALYAGDADLAI 240
Query: 241 GVNNEIQERLGQKPLFNNTQEFLELMNNGGKIEI 274
GVNNEIQERLGQKPLFNNTQEFLELMNNGGKIEI
Sbjct: 241 GVNNEIQERLGQKPLFNNTQEFLELMNNGGKIEI 274
>ref|NP_223422.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71899 hypothetical protein jhp0704 - Helicobacter pylori (strain J99)
gb|AAD06279.1| (AE001501) putative [Helicobacter pylori J99]
Length = 182
Score = 184 bits (467), Expect = 9e-46
Identities = 96/157 (61%), Positives = 116/157 (73%)
Query: 112 SQKIDDNELSCRLLHTGTKILGTKAMAVVGQTFIPIPGVGAIIGNFVGALLSKTLCENLR 171
S KID + +L T L + AM +GQ IPIPGVG +IG FVG ++SKT +
Sbjct: 10 SGKIDRVDCLEKLGKENTTFLSSIAMGSIGQLAIPIPGVGVLIGGFVGGVMSKTFYDVSL 69
Query: 172 DVLKEAKLARQRRIEIEKECRESIRLLEIYRNQFKEVFERYFHGNVKFFNENFNNLERAL 231
+ KEAKLARQRRIEIEKECRESIR LE+Y+NQF EVFERYFHG +KFFNE+F+ LERAL
Sbjct: 70 TIFKEAKLARQRRIEIEKECRESIRQLEMYQNQFNEVFERYFHGTIKFFNESFDELERAL 129
Query: 232 YAGDADLAIGVNNEIQERLGQKPLFNNTQEFLELMNN 268
AGDADLAI VNN+IQE +GQ+ LF+N QE E + +
Sbjct: 130 CAGDADLAIAVNNKIQEGMGQELLFDNKQECWEFITS 166
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,230,222
Number of Sequences: 1026957
Number of extensions: 6927436
Number of successful extensions: 19215
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19213
Number of HSP's gapped (non-prelim): 2
length of query: 274
length of database: 324,149,939
effective HSP length: 119
effective length of query: 155
effective length of database: 201,942,056
effective search space: 31301018680
effective search space used: 31301018680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)