BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645390|ref|NP_207564.1| hypothetical protein [Helicobacter pylori 26695] (245 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207564.1|  (NC_000915) hypothetical protein [Helicoba...   491  e-138
ref|NP_223426.1|  (NC_000921) putative [Helicobacter pylori ...   462  e-129
emb|CAD10448.1|  (AJ417719) NADH dehydrogenase subunit 4 [Ne...    45  0.001
ref|NP_579963.2|  (NC_003416) NADH dehydrogenase subunit 4 [...    45  0.001
ref|NP_059365.1|  (NC_000887) haem lyase [Cyanidioschyzon me...    42  0.008

>ref|NP_207564.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64616 hypothetical protein HP0771 - Helicobacter pylori (strain 26695)
 gb|AAD07824.1| (AE000589) H. pylori predicted coding region HP0771 [Helicobacter
           pylori 26695]
          Length = 245

 Score =  491 bits (1265), Expect = e-138
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MNFYQKIYTHKVVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLG 60
           MNFYQKIYTHKVVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLG
Sbjct: 1   MNFYQKIYTHKVVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLG 60

Query: 61  LIGVSLIYLLVLILKPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLL 120
           LIGVSLIYLLVLILKPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLL
Sbjct: 61  LIGVSLIYLLVLILKPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLL 120

Query: 121 WRFLGASMKQSFLPSMNICIVWVFASSLQSFRFLSVSDCVDFSLFTLALILLILVLIYCK 180
           WRFLGASMKQSFLPSMNICIVWVFASSLQSFRFLSVSDCVDFSLFTLALILLILVLIYCK
Sbjct: 121 WRFLGASMKQSFLPSMNICIVWVFASSLQSFRFLSVSDCVDFSLFTLALILLILVLIYCK 180

Query: 181 RLFGLYEYANTLILIVGLSVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYVHNTLRR 240
           RLFGLYEYANTLILIVGLSVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYVHNTLRR
Sbjct: 181 RLFGLYEYANTLILIVGLSVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYVHNTLRR 240

Query: 241 LEHQI 245
           LEHQI
Sbjct: 241 LEHQI 245

>ref|NP_223426.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71897 hypothetical protein jhp0708 - Helicobacter pylori (strain J99)
 gb|AAD06293.1| (AE001502) putative [Helicobacter pylori J99]
          Length = 245

 Score =  462 bits (1189), Expect = e-129
 Identities = 226/245 (92%), Positives = 235/245 (95%)

Query: 1   MNFYQKIYTHKVVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLG 60
           MNFYQKIYTHKVVFSSLFFLLFLFNVETLL SHFSDDFSQLFFLFENHVYDFI+KLDYLG
Sbjct: 1   MNFYQKIYTHKVVFSSLFFLLFLFNVETLLFSHFSDDFSQLFFLFENHVYDFIIKLDYLG 60

Query: 61  LIGVSLIYLLVLILKPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLL 120
           LIGVS IYLL LILKPFTLTRQKCAC+GILCLSFYAWNFP+K+S + LY+FYFALL TLL
Sbjct: 61  LIGVSSIYLLALILKPFTLTRQKCACIGILCLSFYAWNFPIKNSSIALYVFYFALLGTLL 120

Query: 121 WRFLGASMKQSFLPSMNICIVWVFASSLQSFRFLSVSDCVDFSLFTLALILLILVLIYCK 180
           WRFLGASMKQSFLPSMNIC+VWVFASSLQSFRFLSVSDCVDFSLF LAL LLILVLIY K
Sbjct: 121 WRFLGASMKQSFLPSMNICVVWVFASSLQSFRFLSVSDCVDFSLFILALFLLILVLIYHK 180

Query: 181 RLFGLYEYANTLILIVGLSVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYVHNTLRR 240
           RLFGLYEYANTLILIVGL VVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEY+HNTLRR
Sbjct: 181 RLFGLYEYANTLILIVGLCVVVLCSSMFIQTKEYYGMRLGFYFLGLLGWLLEYIHNTLRR 240

Query: 241 LEHQI 245
           LEH+I
Sbjct: 241 LEHKI 245

>emb|CAD10448.1| (AJ417719) NADH dehydrogenase subunit 4 [Necator americanus]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 19/146 (13%)

Query: 12  VVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLGLIGVSLIYLLV 71
           ++FS ++F LFL     ++L + S  +S LFF+ +++VY  ++ +       +  IY +V
Sbjct: 11  MIFSPVYFFLFLLFFSFMMLKNLS--WSGLFFVVDSNVYVLLIFM-------MIFIYGMV 61

Query: 72  LIL-KPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLLWRFLGASMKQ 130
           LI  K F+L       + ++CL F+     V  ++++LY+++   +  +L   LG     
Sbjct: 62  LISEKNFSLLMLSSGLI-LVCLMFF-----VSSNMLMLYMYFELSMFPILVMILGYG--- 112

Query: 131 SFLPSMNICIVWVFASSLQSFRFLSV 156
           S +  +N     +F +++ SF FL +
Sbjct: 113 SQIEKVNSGYYLLFYAAICSFPFLFI 138

>ref|NP_579963.2| (NC_003416) NADH dehydrogenase subunit 4 [Necator americanus]
          Length = 409

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 19/146 (13%)

Query: 12  VVFSSLFFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLGLIGVSLIYLLV 71
           ++FS ++F LFL     ++L + S  +S LFF+ +++VY  ++ +       +  IY +V
Sbjct: 11  MIFSPVYFFLFLLFFSFMMLKNLS--WSGLFFVVDSNVYVLLIFM-------MIFIYGMV 61

Query: 72  LIL-KPFTLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLLWRFLGASMKQ 130
           LI  K F+L       + ++CL F+     V  ++++LY+++   +  +L   LG     
Sbjct: 62  LISEKNFSLLMLSSGLI-LVCLMFF-----VSSNMLMLYMYFELSMFPILVMILGYG--- 112

Query: 131 SFLPSMNICIVWVFASSLQSFRFLSV 156
           S +  +N     +F +++ SF FL +
Sbjct: 113 SQIEKVNSGYYLLFYAAICSFPFLFI 138

>ref|NP_059365.1| (NC_000887) haem lyase [Cyanidioschyzon merolae]
 pir||A58932 cytochrome C-type biogenesis protein CCMF - Cyanidioschyzon merolae
           mitochondrion
 dbj|BAA36527.1| (D89861) cytochrome C-type biogenesis protein CCMF [Cyanidioschyzon
           merolae]
          Length = 620

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 26/192 (13%)

Query: 18  FFLLFLFNVETLLLSHFSDDFSQLFFLFENHVYDFIVKLDYLGLIGVSLIYLLVLILKPF 77
           FFL+F+F +  +LL  ++  F+ +F L  N+ Y+F+  +  L ++    +YLL ++  PF
Sbjct: 324 FFLVFIFILIVILLKKYT-YFTSIFDL--NNHYNFVYYIFLLVIL--YFLYLLFVLYFPF 378

Query: 78  TLTRQKCACVGILCLSFYAWNFPVKDSLMVLYLFYFALLATLLWRFLGASMKQSFLPSMN 137
            +   KC     L  SF  +N         + L +  +L TL+  FL  S K  F+  + 
Sbjct: 379 LI---KCYNDNALLFSFGFFN--------KILLLFIGILLTLIIIFLINSWKLIFI-FLG 426

Query: 138 ICIVWVFASSLQSFRFLSVSDCVDFSLFTLALILLILVLIYCKRLFGLYEYANTLILIVG 197
           I I+       + F  L          F + L+L  L+LI  ++   +  + N   +++ 
Sbjct: 427 IIIIGGIRGFPEIFLAL---------YFFIYLLLFTLILIIKQKFSFIVYHFNFFFIMLS 477

Query: 198 LSVVVLCSSMFI 209
           L ++ +    FI
Sbjct: 478 LLLITIYGEEFI 489

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.338    0.150    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,581,926
Number of Sequences: 1026957
Number of extensions: 5501689
Number of successful extensions: 28199
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28195
Number of HSP's gapped (non-prelim): 7
length of query: 245
length of database: 324,149,939
effective HSP length: 118
effective length of query: 127
effective length of database: 202,969,013
effective search space: 25777064651
effective search space used: 25777064651
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 96 (41.6 bits)