BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645395|ref|NP_207569.1| hypothetical protein
[Helicobacter pylori 26695]
(84 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207569.1| (NC_000915) hypothetical protein [Helicoba... 164 1e-40
ref|NP_223431.1| (NC_000921) putative [Helicobacter pylori ... 144 2e-34
ref|NP_282420.1| (NC_002163) putative DNA-directed RNA poly... 64 4e-10
>ref|NP_207569.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64616 hypothetical protein HP0776 - Helicobacter pylori (strain 26695)
gb|AAD07826.1| (AE000589) H. pylori predicted coding region HP0776 [Helicobacter
pylori 26695]
Length = 84
Score = 164 bits (416), Expect = 1e-40
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MDRTQNKRISLKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRH 60
MDRTQNKRISLKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRH
Sbjct: 1 MDRTQNKRISLKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRH 60
Query: 61 KLVDIAIREIAEGKIDIDRIDERN 84
KLVDIAIREIAEGKIDIDRIDERN
Sbjct: 61 KLVDIAIREIAEGKIDIDRIDERN 84
>ref|NP_223431.1| (NC_000921) putative [Helicobacter pylori J99]
sp|O25467|RPOZ_HELPY Probable DNA-directed RNA polymerase omega chain (Transcriptase
omega chain) (RNA polymerase omega subunit)
pir||D71898 hypothetical protein jhp0713 - Helicobacter pylori (strain J99)
gb|AAD06288.1| (AE001502) putative [Helicobacter pylori J99]
Length = 74
Score = 144 bits (364), Expect = 2e-34
Identities = 73/74 (98%), Positives = 74/74 (99%)
Query: 11 LKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI 70
+KKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI
Sbjct: 1 MKKERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREI 60
Query: 71 AEGKIDIDRIDERN 84
AEGKIDIDRIDERN
Sbjct: 61 AEGKIDIDRIDERN 74
>ref|NP_282420.1| (NC_002163) putative DNA-directed RNA polymerase omega chain
[Campylobacter jejuni]
sp|Q9PN25|RPOZ_CAMJE Probable DNA-directed RNA polymerase omega chain (Transcriptase
omega chain) (RNA polymerase omega subunit)
pir||C81335 probable DNA-directed RNA polymerase (EC 2.7.7.6) omega chain
Cj1273c [imported] - Campylobacter jejuni (strain NCTC
11168)
emb|CAB73527.1| (AL139077) putative DNA-directed RNA polymerase omega chain
[Campylobacter jejuni]
Length = 74
Score = 63.9 bits (154), Expect = 4e-10
Identities = 33/71 (46%), Positives = 47/71 (65%)
Query: 14 ERTESLVAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEG 73
+R E + A+AL+ +GNDRY L +V R +QL GA LV+ D ++KL DIA+ EIAE
Sbjct: 3 KRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAEN 62
Query: 74 KIDIDRIDERN 84
KI ++ + E N
Sbjct: 63 KITLEGLVETN 73
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.135 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,032,206
Number of Sequences: 1026957
Number of extensions: 1239038
Number of successful extensions: 3477
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3474
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 324,149,939
effective HSP length: 60
effective length of query: 24
effective length of database: 262,532,519
effective search space: 6300780456
effective search space used: 6300780456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)