BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645397|ref|NP_207571.1| hypothetical protein
[Helicobacter pylori 26695]
(227 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207571.1| (NC_000915) hypothetical protein [Helicoba... 458 e-128
ref|NP_223433.1| (NC_000921) putative [Helicobacter pylori ... 438 e-122
ref|NP_282431.1| (NC_002163) hypothetical protein Cj1285c [... 177 1e-43
ref|NP_219939.1| (NC_000117) hypothetical protein [Chlamydi... 54 1e-06
ref|NP_297085.1| (NC_002620) conserved hypothetical protein... 50 1e-05
>ref|NP_207571.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64617 hypothetical protein HP0778 - Helicobacter pylori (strain 26695)
gb|AAD07832.1| (AE000590) H. pylori predicted coding region HP0778 [Helicobacter
pylori 26695]
Length = 227
Score = 458 bits (1178), Expect = e-128
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG
Sbjct: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
Query: 61 YPFALHSHSLGIVAYKEVLSVLVVDTKNAFDKESASSNALSQALGLKGEVLIGNKALQFY 120
YPFALHSHSLGIVAYKEVLSVLVVDTKNAFDKESASSNALSQALGLKGEVLIGNKALQFY
Sbjct: 61 YPFALHSHSLGIVAYKEVLSVLVVDTKNAFDKESASSNALSQALGLKGEVLIGNKALQFY 120
Query: 121 YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEAA 180
YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEAA
Sbjct: 121 YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEAA 180
Query: 181 LKTNLKRQDILNYLQKIYYTLGKKEQLGLKAFYRELLFKRIQKPKRF 227
LKTNLKRQDILNYLQKIYYTLGKKEQLGLKAFYRELLFKRIQKPKRF
Sbjct: 181 LKTNLKRQDILNYLQKIYYTLGKKEQLGLKAFYRELLFKRIQKPKRF 227
>ref|NP_223433.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71898 hypothetical protein jhp0715 - Helicobacter pylori (strain J99)
gb|AAD06290.1| (AE001502) putative [Helicobacter pylori J99]
Length = 227
Score = 438 bits (1127), Expect = e-122
Identities = 218/227 (96%), Positives = 223/227 (98%)
Query: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG
Sbjct: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
Query: 61 YPFALHSHSLGIVAYKEVLSVLVVDTKNAFDKESASSNALSQALGLKGEVLIGNKALQFY 120
YPFAL S+SLGIVAYKEVLSVLVV+ +NAFDKESASSNALS+ LGLKGEVLIGNKALQFY
Sbjct: 61 YPFALCSYSLGIVAYKEVLSVLVVNRENAFDKESASSNALSKVLGLKGEVLIGNKALQFY 120
Query: 121 YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEAA 180
YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIP+YILKEAA
Sbjct: 121 YSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPHYILKEAA 180
Query: 181 LKTNLKRQDILNYLQKIYYTLGKKEQLGLKAFYRELLFKRIQKPKRF 227
LKTNLKRQDILNYLQKIYYTLGKKEQ GLKAFYRELLFKRIQKPKRF
Sbjct: 181 LKTNLKRQDILNYLQKIYYTLGKKEQSGLKAFYRELLFKRIQKPKRF 227
>ref|NP_282431.1| (NC_002163) hypothetical protein Cj1285c [Campylobacter jejuni]
pir||F81336 hypothetical protein Cj1285c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73538.1| (AL139077) hypothetical protein Cj1285c [Campylobacter jejuni]
Length = 223
Score = 177 bits (448), Expect = 1e-43
Identities = 101/216 (46%), Positives = 133/216 (60%), Gaps = 3/216 (1%)
Query: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
M FGKIDY+N+LP +++K YP P +K + KK PSKLN+ +RRIDA ISSI
Sbjct: 1 MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKDLFYRRIDAAIISSIES 60
Query: 61 YPFALHSHSLGIVAYKEVLSVLV-VDTKNAFDKESASSNALSQALGLKGEVLIGNKALQF 119
+ LGI A K VLSVLV +T NA D SA+SNAL++ L G+V+IG+KAL+
Sbjct: 61 ARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALAKVLKQDGKVIIGDKALKL 120
Query: 120 YYSNPKKDFIDLAALWYEKKRLPFVFGRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEA 179
Y +P K +IDL A W+EK LPFVF R Q K YK++ F K KIPYYIL+
Sbjct: 121 YLKDPSK-YIDLCAKWHEKTGLPFVFARFSCVQKKALYKQILKKFPKTKIKIPYYILQNY 179
Query: 180 ALKTNLKRQDILNYLQK-IYYTLGKKEQLGLKAFYR 214
A +L +D+ YL + IY+ + KE+ LK F +
Sbjct: 180 AKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVK 215
>ref|NP_219939.1| (NC_000117) hypothetical protein [Chlamydia trachomatis]
pir||C71516 hypothetical protein CT427 - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68024.1| (AE001316) hypothetical protein [Chlamydia trachomatis]
Length = 273
Score = 53.9 bits (128), Expect = 1e-06
Identities = 64/254 (25%), Positives = 96/254 (37%), Gaps = 55/254 (21%)
Query: 1 MRFGKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAG 60
+ G + Y+N LPF + P + L P+ L L R ID S A
Sbjct: 9 LNIGCVRYVNALPFSSGLSQAPG-------VSLLMDTPTNLVPKLLSREIDYALTSVAAT 61
Query: 61 YPFALHS-HSLGIVAYKEVLSVLVVDTKNAFDKES------------------------- 94
+ LH S GI AYK++LSV + T F KE+
Sbjct: 62 FSSPLHRVSSFGIAAYKKILSVNLHATSQFFAKEAPHIAATKESLSSILLLRVLCENLWN 121
Query: 95 ---------ASSNALSQALGLKGEVLIGNKALQFYYSNPKKDFIDLAALWYEKKRLPFVF 145
+S + L+QA +LIG+ AL+ + P DLAA WY+ PFVF
Sbjct: 122 IPFPSVTLLSSDSILTQAEHYDALLLIGDTALR-HPIIPGFHTYDLAASWYDLTAKPFVF 180
Query: 146 -------GRLCYYQNKDFYKRLSLAFKHQKTKIPYYILKEAALKTNLKRQDILNYLQKIY 198
+ + ++F L+ H++ I +AA L + Y
Sbjct: 181 AGILSLSSTISFQLQQEFSSALNYFQNHKED-----ITSKAAALLKLPESLMQEYYTLCR 235
Query: 199 YTLGKKEQLGLKAF 212
Y L +++ GL+ F
Sbjct: 236 YELSEEDFAGLEQF 249
>ref|NP_297085.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||G81674 conserved hypothetical protein TC0711 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39524.1| (AE002339) conserved hypothetical protein [Chlamydia muridarum]
Length = 266
Score = 50.4 bits (119), Expect = 1e-05
Identities = 63/265 (23%), Positives = 101/265 (37%), Gaps = 57/265 (21%)
Query: 4 GKIDYLNMLPFDVFIKSYPTPCYFKQFLRLKKTYPSKLNESFLFRRIDAGFISSIAGYPF 63
G + Y+N LPF + + P + L+ PS L L + ID S IA +
Sbjct: 12 GCVCYVNALPFSIGLSQAPG-------VSLQTDTPSNLVSKLLSKEIDYALTSVIAKFSS 64
Query: 64 ALHSHSL-GIVAYKEVLSVLVVDTKNAFDKES---------------------------- 94
LH S GI AY+++LSV + T F KE+
Sbjct: 65 PLHQVSFFGIAAYQKILSVNLHATPQFFAKEAPRIAATKESRSSIALMRILCKNLWKIPF 124
Query: 95 ------ASSNALSQALGLKGEVLIGNKALQFYYSNPKKDFIDLAALWYEKKRLPFVFGRL 148
+S L Q +LIG+ AL + P DL W++ PFVF +
Sbjct: 125 PSITLLSSKEILDQVELYDALLLIGDTALH-HQIIPGFQTYDLVTSWHDLTSKPFVFAGV 183
Query: 149 CYYQN-------KDFYKRLSLAFKHQKTKIPYYILKEAALKTNLKRQDILNYLQKIYYTL 201
+ + ++F+ L H++ I ++AA L + Y Y L
Sbjct: 184 LSHSSTLPLQLQQEFFSSLHYFQDHREE-----IWRKAAALLKLPESLMQQYYSLCRYEL 238
Query: 202 GKKEQLGLKAF--YRELLFKRIQKP 224
+++ GL+ F Y + L ++ + P
Sbjct: 239 SEEDFAGLQQFKNYYDKLPRQAEHP 263
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,801,526
Number of Sequences: 1026957
Number of extensions: 5436801
Number of successful extensions: 15401
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15392
Number of HSP's gapped (non-prelim): 7
length of query: 227
length of database: 324,149,939
effective HSP length: 117
effective length of query: 110
effective length of database: 203,995,970
effective search space: 22439556700
effective search space used: 22439556700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 95 (41.2 bits)