BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645399|ref|NP_207573.1| hypothetical protein
[Helicobacter pylori 26695]
         (90 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207573.1|  (NC_000915) hypothetical protein [Helicoba...   178  1e-44
ref|NP_223435.1|  (NC_000921) putative [Helicobacter pylori ...   159  6e-39

>ref|NP_207573.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64617 hypothetical protein HP0780 - Helicobacter pylori (strain 26695)
 gb|AAD07833.1| (AE000590) H. pylori predicted coding region HP0780 [Helicobacter
          pylori 26695]
          Length = 90

 Score =  178 bits (451), Expect = 1e-44
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MAVKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEV 60
          MAVKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEV
Sbjct: 1  MAVKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEV 60

Query: 61 LSGQLGDMRKDILSTRDYCISLRPYIYNWR 90
          LSGQLGDMRKDILSTRDYCISLRPYIYNWR
Sbjct: 61 LSGQLGDMRKDILSTRDYCISLRPYIYNWR 90



>ref|NP_223435.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71896 hypothetical protein jhp0717 - Helicobacter pylori (strain J99)
 gb|AAD06300.1| (AE001503) putative [Helicobacter pylori J99]
          Length = 88

 Score =  159 bits (402), Expect = 6e-39
 Identities = 81/88 (92%), Positives = 84/88 (95%)

Query: 3  VKKIVVSWCVALAFLSADSAQANKAISNADLIKEIRDLKKIISAQNTEINNLRKVQEVLS 62
          +KKIVVS CVAL FLSAD AQANKAIS+ADLI+EIRDLKKIISAQNTEIN LRKVQEVLS
Sbjct: 1  MKKIVVSLCVALGFLSADPAQANKAISDADLIEEIRDLKKIISAQNTEINQLRKVQEVLS 60

Query: 63 GQLGDMRKDILSTRDYCISLRPYIYNWR 90
          GQLGDMRKDILSTRDYCISLRPYIYNWR
Sbjct: 61 GQLGDMRKDILSTRDYCISLRPYIYNWR 88



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,576,040
Number of Sequences: 1026957
Number of extensions: 1334521
Number of successful extensions: 6006
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6004
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 324,149,939
effective HSP length: 66
effective length of query: 24
effective length of database: 256,370,777
effective search space: 6152898648
effective search space used: 6152898648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)