BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645400|ref|NP_207574.1| hypothetical protein [Helicobacter pylori 26695] (429 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207574.1|  (NC_000915) hypothetical protein [Helicoba...   848  0.0
ref|NP_223436.1|  (NC_000921) putative [Helicobacter pylori ...   790  0.0
ref|NP_282116.1|  (NC_002163) putative periplasmic protein [...   157  2e-37

>ref|NP_207574.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64617 hypothetical protein HP0781 - Helicobacter pylori (strain 26695)
 gb|AAD07834.1| (AE000590) H. pylori predicted coding region HP0781 [Helicobacter
           pylori 26695]
          Length = 429

 Score =  848 bits (2192), Expect = 0.0
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN 60
           MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN
Sbjct: 1   MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN 60

Query: 61  QIFSFVSQYDNNNQDESLKTYYHDILNKLNPVFIASQTPAKESYEPKIELAVLLPKKVVG 120
           QIFSFVSQYDNNNQDESLKTYYHDILNKLNPVFIASQTPAKESYEPKIELAVLLPKKVVG
Sbjct: 61  QIFSFVSQYDNNNQDESLKTYYHDILNKLNPVFIASQTPAKESYEPKIELAVLLPKKVVG 120

Query: 121 RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV 180
           RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV
Sbjct: 121 RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV 180

Query: 181 ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVI 240
           ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVI
Sbjct: 181 ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVI 240

Query: 241 EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT 300
           EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT
Sbjct: 241 EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT 300

Query: 301 KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS 360
           KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS
Sbjct: 301 KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS 360

Query: 361 LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQENLEDNQVRYHNQIYQALGYSFEPI 420
           LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQENLEDNQVRYHNQIYQALGYSFEPI
Sbjct: 361 LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQENLEDNQVRYHNQIYQALGYSFEPI 420

Query: 421 KNESGTKKE 429
           KNESGTKKE
Sbjct: 421 KNESGTKKE 429

>ref|NP_223436.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71896 hypothetical protein jhp0718 - Helicobacter pylori (strain J99)
 gb|AAD06301.1| (AE001503) putative [Helicobacter pylori J99]
          Length = 429

 Score =  790 bits (2040), Expect = 0.0
 Identities = 396/429 (92%), Positives = 411/429 (95%)

Query: 1   MPYALRKRFFKRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN 60
           MPYALRKRFFKR  L     C I+L+AKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN
Sbjct: 1   MPYALRKRFFKRLLLFFLIVCMINLHAKSYLFSPLPPAHQQIIKTEPCSLECLKDLMLQN 60

Query: 61  QIFSFVSQYDNNNQDESLKTYYHDILNKLNPVFIASQTPAKESYEPKIELAVLLPKKVVG 120
           QIFSFVSQYD+NNQDESLKTYY DILNKLNPVFIASQTPAKESYEPKIELA+LLPKKVVG
Sbjct: 61  QIFSFVSQYDDNNQDESLKTYYKDILNKLNPVFIASQTPAKESYEPKIELAILLPKKVVG 120

Query: 121 RYAISVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGV 180
           RYAI VMNTLLAYLNTRNNDFNIQVFDSDEESPEKLE+TYKEIEKEKFPF+IALLTKEGV
Sbjct: 121 RYAILVMNTLLAYLNTRNNDFNIQVFDSDEESPEKLEETYKEIEKEKFPFIIALLTKEGV 180

Query: 181 ENLLQNTTISTPTYVPTVNRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVI 240
           ENLLQNTTI+TPTYVPTVN+ QLEN TE SLSERLYFGGIDYKEQL ML  FI+PNSPVI
Sbjct: 181 ENLLQNTTINTPTYVPTVNKTQLENHTELSLSERLYFGGIDYKEQLGMLATFISPNSPVI 240

Query: 241 EYDDDGLIGERLRQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTT 300
           EYDDDGLIGERLRQITESL++EVKHQENISYKQATSFSKNFRK+DAFFKNS LILNTPTT
Sbjct: 241 EYDDDGLIGERLRQITESLNVEVKHQENISYKQATSFSKNFRKHDAFFKNSTLILNTPTT 300

Query: 301 KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYAS 360
           KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRK+LFIVNALQNSDETLIEYAS
Sbjct: 301 KSGLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKNLFIVNALQNSDETLIEYAS 360

Query: 361 LLESDLRHDWVNYSSAIGLEVFLNTLDPHFKKSFQENLEDNQVRYHNQIYQALGYSFEPI 420
           LLESDLRHDWVNYSSAIGLE+FLNTLDPHFKKSFQE+LEDNQVRYHNQIYQALGYSFEPI
Sbjct: 361 LLESDLRHDWVNYSSAIGLEMFLNTLDPHFKKSFQESLEDNQVRYHNQIYQALGYSFEPI 420

Query: 421 KNESGTKKE 429
           KNES TKKE
Sbjct: 421 KNESETKKE 429

>ref|NP_282116.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||C81371 probable periplasmic protein Cj0964 [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73221.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
          Length = 396

 Score =  157 bits (397), Expect = 2e-37
 Identities = 111/420 (26%), Positives = 207/420 (48%), Gaps = 34/420 (8%)

Query: 11  KRFALIVSTFCAISLNAKSYLFSPLPPAHQQIIK--TEPCSLECLKDLMLQNQIFSFVSQ 68
           K+  LI    C + LNAK      + P      K   + C+  CL DL+      SF+S+
Sbjct: 2   KKIFLIFFLSCFL-LNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSFLSE 60

Query: 69  YDNNNQDESLKTYYHDILNKLNPVFIASQTPAKESYEP--KIELAVLLPKKVVGRYAISV 126
           + + N D+ L   Y  +LN +        T  +++ +    ++LA+++P+K +  Y+ ++
Sbjct: 61  FADQN-DQFLSNVYAKLLNSI--------TDFEKNVQKITSVKLAIIIPEKTIKSYSNTI 111

Query: 127 MNTLLAYLNTRNNDFNIQVFDSDEESPEKLEQTYKEIEKEKFPFVIALLTKEGVENLLQN 186
           +N+ +AYL  +  +  ++VF +  E  +K+       + + + + IA  T +G  N L+N
Sbjct: 112 INSSIAYLLRQRAEIKVKVFLTGTEDNDKIRAALDAAQAQGYQYAIAGFTLKGA-NELKN 170

Query: 187 TTISTPTYVPTV--NRAQLENQTERSLSERLYFGGIDYKEQLSMLTAFINPNSPVIEYDD 244
            + +   ++PT+  N  Q+ NQ        + FG IDY  Q++ L +  N N  +  + D
Sbjct: 171 YSGNMKIFIPTIHKNNIQISNQN-------IIFGSIDYDAQIATLLSKSNANIAI--FSD 221

Query: 245 DGLIGERL--RQITESLSIEVKHQENISYKQATSFSKNFRKNDAFFKNSILILNTPTTKS 302
              +   L  R + ++ +  +   E     +   FS+  R       N+ +  NTP  K+
Sbjct: 222 GSALSSNLNSRILAQNNNARIYTIEG----EKLDFSRLLRSQGGV-NNASIFFNTPLIKT 276

Query: 303 GLILSQIGLLEYKPLKILSTQINFNPSLLLLTQPKDRKDLFIVNALQNSDETLIEYASLL 362
            L  SQ+ +    P  +LSTQIN+NP+ L LTQ  DR++  I N++ N D+ L+    + 
Sbjct: 277 ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIF 336

Query: 363 ESDLRHDWVNYSSAIGLEVFLNT-LDPHFKKSFQENLEDNQVRYHNQIYQALGYSFEPIK 421
              + ++W+ Y+++IG++ F    L+   +  F E ++++QV Y  ++ Q    SFE +K
Sbjct: 337 NQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK 396

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,373,285
Number of Sequences: 1026957
Number of extensions: 11062015
Number of successful extensions: 33703
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33696
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 324,149,939
effective HSP length: 124
effective length of query: 305
effective length of database: 196,807,271
effective search space: 60026217655
effective search space used: 60026217655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 99 (42.7 bits)