BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645401|ref|NP_207575.1| hypothetical protein
[Helicobacter pylori 26695]
(455 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 943 0.0
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 855 0.0
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 334 1e-90
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 331 1e-89
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 326 3e-88
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 325 5e-88
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 325 5e-88
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 325 9e-88
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 282 5e-75
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 280 2e-74
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 254 1e-66
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 251 2e-65
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 188 1e-46
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 186 5e-46
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 186 5e-46
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 185 1e-45
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 943 bits (2437), Expect = 0.0
Identities = 455/455 (100%), Positives = 455/455 (100%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA
Sbjct: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWW 120
TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWW
Sbjct: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWW 120
Query: 121 GYLGDAPWKDSRIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFEL 180
GYLGDAPWKDSRIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFEL
Sbjct: 121 GYLGDAPWKDSRIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFEL 180
Query: 181 DYKINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQA 240
DYKINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQA
Sbjct: 181 DYKINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQA 240
Query: 241 TPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGE 300
TPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGE
Sbjct: 241 TPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGE 300
Query: 301 WGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTA 360
WGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTA
Sbjct: 301 WGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTA 360
Query: 361 DSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSM 420
DSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSM
Sbjct: 361 DSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSM 420
Query: 421 HTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
HTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF
Sbjct: 421 HTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 855 bits (2208), Expect = 0.0
Identities = 409/455 (89%), Positives = 431/455 (93%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAES SKVGFNHSKLNSKEGIFPTATFVTA
Sbjct: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTA 60
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWW 120
TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQ+YGSELF+ IGRWW
Sbjct: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQIYGSELFYLIGRWW 120
Query: 121 GYLGDAPWKDSRIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFEL 180
G+LG+APWKDS IESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMS YTQGFEL
Sbjct: 121 GFLGNAPWKDSLIESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSSYTQGFEL 180
Query: 181 DYKINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQA 240
DYKINSKIALKWFSSFGRALA GQWIRDWYAPIVTEDGRK+V GIHA QLYFS+KHVQ
Sbjct: 181 DYKINSKIALKWFSSFGRALAFGQWIRDWYAPIVTEDGRKEVYDGIHAAQLYFSSKHVQV 240
Query: 241 TPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGE 300
PF YFSPK Y APG+KIHIDSNPKF+GLGLR+QT INVIFPVYAKDLYDV WRNSKIGE
Sbjct: 241 MPFAYFSPKIYGAPGVKIHIDSNPKFKGLGLRAQTTINVIFPVYAKDLYDVYWRNSKIGE 300
Query: 301 WGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTA 360
WGASLLIHQRFD NEFNFGFGYYQNFGNANARIGWYGNPIPF+ R+NS+YG VFSNA+TA
Sbjct: 301 WGASLLIHQRFDYNEFNFGFGYYQNFGNANARIGWYGNPIPFNYRNNSVYGGVFSNAITA 360
Query: 361 DSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSM 420
D+VSGYVFGGGVYRGFLWGILGRYTYATRASERSINL+LGY+WGSFA VDVNL+YY VSM
Sbjct: 361 DAVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLNLGYKWGSFARVDVNLEYYVVSM 420
Query: 421 HTGYKVNDLTSPFNKAFKANTQDRSNLMVSVKFFF 455
H GY+++ LT PFNKAFKA+ QDRSNLMVS+KFFF
Sbjct: 421 HNGYRLDYLTGPFNKAFKADAQDRSNLMVSMKFFF 455
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 334 bits (857), Expect = 1e-90
Identities = 201/473 (42%), Positives = 273/473 (57%), Gaps = 43/473 (9%)
Query: 14 ILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPK 73
+L + L AFDYK AESFSKVGFN K++ GI+PT TFVTA + + ++ LPK
Sbjct: 17 VLSLSASLQAFDYKIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLPK 76
Query: 74 NIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD------ 125
++ H L+ +GG LG +AYDSTK +Q GS ++ +IG W GYLG
Sbjct: 77 GLKDQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLD 129
Query: 126 -------APWKDSRI---------ESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
A D ++ ++ RNY++ N++L Y Y D F K GRY SN
Sbjct: 130 GTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFLAKGGRYQSNAP 189
Query: 170 FMSGYTQGFELDYKINSKIA----LKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYG 225
+MSGYTQGFE+ K+ K L WFSS+GRA A G+WI D+Y+P + ++YG
Sbjct: 190 YMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFYSPRTVVKNGRTLNYG 249
Query: 226 IHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYA 285
IH V + K V +PFF FSP TY +PG+ + DSNP F G+G RS+T ++ PV+
Sbjct: 250 IHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGVGFRSETKAYILLPVHD 309
Query: 286 KDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIR 345
D K G G SLLI QRFD NEFNFG +Y+ + NANA IG GNP+ D
Sbjct: 310 PLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFW 369
Query: 346 SNSIY--GLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRW 403
+NS+Y G S+ VTAD+VSG+VFGGGV++ +LWG L R+T T A+E S +++GY+
Sbjct: 370 TNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGTLANEASAAVNVGYKI 429
Query: 404 GSFASVDVNLQYYEVSMHTGYKVNDL-TSPFNKAFKANTQDRSNLM--VSVKF 453
+ V L+Y V H G+ V +P +KA + DRS+LM +S KF
Sbjct: 430 SKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSKALYS---DRSHLMTTLSAKF 479
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 331 bits (848), Expect = 1e-89
Identities = 199/473 (42%), Positives = 274/473 (57%), Gaps = 43/473 (9%)
Query: 14 ILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPK 73
+L + + AFDYK +AESFSKVGFN K++ GI+PT TFVTA + + ++ L K
Sbjct: 17 VLSLSASVQAFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADFLSK 76
Query: 74 NIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD------ 125
+++ H L+ VGG +G +AYDSTK +Q GS ++ +IG W GYLG
Sbjct: 77 SLKDQGHVLEGKVGGTIGGIAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRALLD 129
Query: 126 -------APWKDSRI---------ESDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMD 169
A D ++ ++ RNY++ N++L Y Y D F K GRY SN
Sbjct: 130 GTSIHECALGSDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYKDIFAAKGGRYQSNAP 189
Query: 170 FMSGYTQGFELDYKINSKIA----LKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYG 225
+MS YTQGFE+ KI K L WFSS+GRA A G+WI D+Y+P + ++YG
Sbjct: 190 YMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFYSPRTVIKNGRTLNYG 249
Query: 226 IHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYA 285
IH V + K V +PFF FSP TY +PG+ + DSNP F G+G RS+T ++ PV+A
Sbjct: 250 IHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGVGFRSETKAYILLPVHA 309
Query: 286 KDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIR 345
D K G G SLLI QRFD NEFNFG +Y+ + NANA IG GNP+ D
Sbjct: 310 PLKRDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNANAYIGTTGNPLGIDFW 369
Query: 346 SNSIY--GLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRW 403
+NS+Y G S+ VTAD+VSG+VFGGGV++ +LWG L R+T A+E S +++GY+
Sbjct: 370 TNSVYDIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTSGALANEASAAVNVGYKI 429
Query: 404 GSFASVDVNLQYYEVSMHTGYKVNDL-TSPFNKAFKANTQDRSNLM--VSVKF 453
+ V L+Y V H+G+ V +P +KA + DRS+LM +S KF
Sbjct: 430 SKSLTASVKLEYLGVMTHSGFTVGSYRPTPGSKALYS---DRSHLMTTLSAKF 479
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 326 bits (836), Expect = 3e-88
Identities = 178/438 (40%), Positives = 265/438 (59%), Gaps = 8/438 (1%)
Query: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
L AF+Y+ S SFS++ FN S +NSK+GI+PT ++VT T LQVDS+LLPK IE H L
Sbjct: 6 LSAFEYQVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVDSSLLPKGIENHKL 65
Query: 81 KIGVGGILGALAYDSTKTLIDQATHQV-YGSELFFFIGRWWGYLGDAPWKDSRIESDAHT 139
GVGG +GALAYDSTK LID+A + + ++++GRW GYL +R + +
Sbjct: 66 GFGVGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNA 125
Query: 140 RNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRA 199
R YVLYN YL Y Y D F +KLGRY S F+SG+ QGFE+ Y+ K + WFS+FGRA
Sbjct: 126 RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEIFYRW-KKFKIVWFSTFGRA 184
Query: 200 LAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIH 259
LA Q+IRD+YAP+ + ++ ++YG+H L + NK+++ PF +F PK + APG +I
Sbjct: 185 LANEQYIRDFYAPV---NYKQKINYGMHNFNLVYENKYIRIAPFIWFYPKNFNAPGFEIT 241
Query: 260 IDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFG 319
D+ ++ L R QT FP+Y+ L +R + +G+ A+L + QR + + FG
Sbjct: 242 HDTKSYWKSL-WRIQTTFYAWFPLYSDYLSKDYYRAALVGKKSAALFVFQRVNFRSYRFG 300
Query: 320 FGYYQNFGNANARIGWYGNPIP--FDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFL 377
+ Y+NFGNA+ ++GW G+PI +D + ++ Y +SN A+S++ F G + L
Sbjct: 301 WSVYKNFGNASVQLGWNGSPIDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSIKNLL 360
Query: 378 WGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAF 437
+ G+ TY+ RA +S+ + Y + + Y+++MH GYKV TS +N F
Sbjct: 361 VQLYGKLTYSPRADAQSLGVTFKYNLKKHIYFMLMVNGYQITMHKGYKVGFFTSGYNPDF 420
Query: 438 KANTQDRSNLMVSVKFFF 455
Q+RS LM S+ + F
Sbjct: 421 AQTIQNRSYLMSSMSYRF 438
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 325 bits (834), Expect = 5e-88
Identities = 185/484 (38%), Positives = 270/484 (55%), Gaps = 43/484 (8%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVD- 67
LLF+ +++ L K AESFSKVGFN+ +N+ +GI+PT TF+T +QVD
Sbjct: 14 LLFLFFSQSEAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGIYPTETFMTIMAYMQVDF 73
Query: 68 SNLLPKNIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD 125
+ LLPK+ H L +GG GA+ YDSTK I++ T + YG+ + ++G W G +G
Sbjct: 74 TELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMTWNYVGYWGGLVGQ 133
Query: 126 APWK--------------DSRIESDA--------------------HTRNYVLYNSYLFY 151
PW D +++ HTRNYV+YN+YL Y
Sbjct: 134 KPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADHTRNYVIYNAYLRY 193
Query: 152 SYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAAGQWIRDWYA 211
+Y D F ++ GRY S D+MSGY QG ++ + + WFSSFGR A +W+ ++Y+
Sbjct: 194 NYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGN-FKFWWFSSFGRGFAYNEWLYNFYS 252
Query: 212 P-IVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLG 270
P T + ++ G+HA + ++ K PF YFSP P I DSNP F GLG
Sbjct: 253 PKTYTLKNGQTINPGVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLG 312
Query: 271 LRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNAN 330
RSQT + V+ P YAK +D G+ SL+I Q+F+ NE+NFGFG Y++FGNAN
Sbjct: 313 FRSQTDVTVLNPFYAKRFWDTYQFGMLAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNAN 372
Query: 331 ARIGWYGNPIPFDIRSNSIYGLV---FSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYA 387
IG++GN + FD +N++Y S + A++ + + FGGGV+R LWG+LGR TY
Sbjct: 373 WMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG 432
Query: 388 TRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNL 447
RA+E+ ++L+LGY++ S D+ +YY V MH GYK+ P + A QDRS++
Sbjct: 433 PRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMG-WNGPKLDSQPATDQDRSHI 491
Query: 448 MVSV 451
+
Sbjct: 492 FTEI 495
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 325 bits (834), Expect = 5e-88
Identities = 178/438 (40%), Positives = 263/438 (59%), Gaps = 8/438 (1%)
Query: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
L AF+Y+ S SFS++ FN S +NSK+GI+PT ++VT T LQVD +LLPK IE H L
Sbjct: 18 LNAFEYQISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLSLLPKGIENHKL 77
Query: 81 KIGVGGILGALAYDSTKTLIDQATHQV-YGSELFFFIGRWWGYLGDAPWKDSRIESDAHT 139
GVGG +G+LAYDSTK L+D+A + + ++++GRW GYL +R + +
Sbjct: 78 GFGVGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQHSQNWTREQKAQNA 137
Query: 140 RNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRA 199
R YVLYN YL Y Y D F +KLGRY S F+SG+ QGFE+ Y+ K ++WFS+FGRA
Sbjct: 138 RPYVLYNLYLDYQYKDIFGIKLGRYPSKALFLSGFNQGFEVFYRW-KKFRIEWFSTFGRA 196
Query: 200 LAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIH 259
LA Q IRD+YAP+ + ++ ++YG+H + L + NK+++ PF +F PK + APG +I
Sbjct: 197 LANEQSIRDFYAPV---NYKQKINYGMHNLNLIYENKYIRVAPFIWFYPKNFNAPGFEIT 253
Query: 260 IDSNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFG 319
D+ + L R QT FP+Y+ L +R S IG+ ASL + QR + FG
Sbjct: 254 HDTKSYWESL-WRIQTTFYAWFPLYSDYLSKDYYRASLIGKKSASLFVFQRVHFRSYRFG 312
Query: 320 FGYYQNFGNANARIGWYGNPIP--FDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFL 377
+ Y+NFGN NA++GW G+P+ +D + ++ Y +SN A+S++ F G + L
Sbjct: 313 WSVYKNFGNGNAQLGWNGSPVDPFYDTKDDTPYEDAYSNFYNANSITINAFIGKSVKNLL 372
Query: 378 WGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAF 437
+ G+ TY+ RA +S+ + Y + + Y+++MH GYKV TS +N F
Sbjct: 373 VQLYGKLTYSPRADSQSLGVTFKYNLKKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDF 432
Query: 438 KANTQDRSNLMVSVKFFF 455
Q+RS LM S+ + F
Sbjct: 433 AQTIQNRSYLMSSMSYRF 450
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 325 bits (832), Expect = 9e-88
Identities = 184/484 (38%), Positives = 267/484 (55%), Gaps = 43/484 (8%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVD- 67
LLF+ +Q+ L K AESFSKVGFN+ +N+ +G++PT TF+T +QVD
Sbjct: 14 LLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDF 73
Query: 68 SNLLPKNIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD 125
+ LLPK+ H L +GG GA+ YDSTK I++ T + YG+ + ++G W G +G
Sbjct: 74 TELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQ 133
Query: 126 APWKDSRIESD----------------------------------AHTRNYVLYNSYLFY 151
PW + + AHTRNYV+YN+YL Y
Sbjct: 134 KPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRY 193
Query: 152 SYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAAGQWIRDWYA 211
+Y D F ++ GRY S D+MSGY QG ++ + + WFSSFGR A +W+ ++Y+
Sbjct: 194 NYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGN-FKFWWFSSFGRGFAYNEWLYNFYS 252
Query: 212 P-IVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLG 270
P T + ++ G+HA ++ K PF YFSP P I DSNP F GLG
Sbjct: 253 PKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLG 312
Query: 271 LRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNAN 330
RSQT + V+ P YAK +D G+ SL+I Q+F+ NE+NFGFG Y++FGNAN
Sbjct: 313 FRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNAN 372
Query: 331 ARIGWYGNPIPFDIRSNSIYGLV---FSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYA 387
IG++GN + FD +N++Y S + A++ + + FGGGV+R LWG+LGR TY
Sbjct: 373 WMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG 432
Query: 388 TRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNL 447
RA+E+ ++L+ GY++ S D+ +YY V MH GYK+ P + A QDRS++
Sbjct: 433 PRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMG-WNGPKLDSQPATDQDRSHI 491
Query: 448 MVSV 451
+
Sbjct: 492 FTEI 495
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 282 bits (722), Expect = 5e-75
Identities = 171/495 (34%), Positives = 260/495 (51%), Gaps = 60/495 (12%)
Query: 20 PLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHS 79
P+ AFDY+FSG E+FSK+GFN+S++N+K+GI+PT +F+ QV NLLPK E H
Sbjct: 21 PVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHR 80
Query: 80 LKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWG-----YLGDAPWKDSRIE 134
L + +GG + A+ YD TK I+QA +V+GS + FIG + G YLG A + +
Sbjct: 81 LSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPA-YAGTSQS 139
Query: 135 SDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYK----INSKIAL 190
+ H R YV+ ++L Y Y D F K GRY +N+DFMSG QG+E+ Y+ ++
Sbjct: 140 ASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRF 199
Query: 191 KWFSSFGRALAAGQWIRDWYA--PIVTEDGRKD-----VDYGIHAVQLYFSNKHVQATPF 243
W+SSFGR LA WI +++A P + + G ++YG H + +S K + A F
Sbjct: 200 WWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFF 259
Query: 244 FYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLY----------DVVW 293
+YF+PKTY APG K+ D+N F +G RSQ++I FP+Y + Y D
Sbjct: 260 YYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTP 319
Query: 294 RNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNP-------------- 339
S +G G +L I Q F + FN+ G+Y FGN++A +G + P
Sbjct: 320 HGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISV 379
Query: 340 -------IPFDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYAT---- 388
I +D N+ Y + A++ + Y GG+++ F W + GR ++A
Sbjct: 380 TTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNAL 439
Query: 389 ----RASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSP-FNKA---FKAN 440
RA+E S+ + Y + ++ + YY ++ GY+ +P FN F AN
Sbjct: 440 GQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSAN 499
Query: 441 TQDRSNLMVSVKFFF 455
QDRS +M ++ F
Sbjct: 500 YQDRSYMMTNLTLKF 514
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 280 bits (717), Expect = 2e-74
Identities = 170/495 (34%), Positives = 261/495 (52%), Gaps = 60/495 (12%)
Query: 20 PLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHS 79
P AFDY+FSG E+FSK+GFN+S++N+K+GI+PT +F+ QV NLLPK E H
Sbjct: 21 PAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHR 80
Query: 80 LKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWG-----YLGDAPWKDSRIE 134
L + +GG + A+ YD TK I+QA +++GS + FIG + G YLG A + +
Sbjct: 81 LSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPA-YAGTSQS 139
Query: 135 SDAHTRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYK----INSKIAL 190
+ H R YV+ ++L Y Y D F K GRY +N+DFMSG QG+E+ Y+ ++
Sbjct: 140 ASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRF 199
Query: 191 KWFSSFGRALAAGQWIRDWYA--PIVTEDGRKD-----VDYGIHAVQLYFSNKHVQATPF 243
W+SSFGR LA WI +++A P + + G + ++YG H + +S K + A F
Sbjct: 200 WWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFF 259
Query: 244 FYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLY----------DVVW 293
+YF+PKTY APG K+ D+N F+ +G RSQ++I FP+Y + Y D
Sbjct: 260 YYFAPKTYNAPGFKLVYDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTP 319
Query: 294 RNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNP-------------- 339
S +G G +L I Q F + FN+ G+Y FGN++A +G + P
Sbjct: 320 HGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISI 379
Query: 340 -------IPFDIRSNSIYGLVFSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYAT---- 388
I +D N+ Y + A++ + Y GG+++ F W + GR ++A
Sbjct: 380 TTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNAL 439
Query: 389 ----RASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSP-FNKA---FKAN 440
RA+E S+ + Y + ++ + YY ++ GY+ +P FN F AN
Sbjct: 440 GQVGRANEYSLQFNASYAFTESILLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSAN 499
Query: 441 TQDRSNLMVSVKFFF 455
QDRS +M ++ F
Sbjct: 500 YQDRSYMMTNLTLKF 514
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 254 bits (649), Expect = 1e-66
Identities = 157/454 (34%), Positives = 231/454 (50%), Gaps = 23/454 (5%)
Query: 19 SPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKH 78
S L F+ K +G + S +GFN K+N + GI+P F T L + +LLPK + H
Sbjct: 16 SSLQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDH 75
Query: 79 SLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGDAPWKDSRIESDAH 138
LK +GG++G++ YD TK D + F+G + L ++ + +
Sbjct: 76 VLKGKIGGMVGSIFYDGTKKFEDSSVAYNLFGYYDGFMGGYTNILQSDDLATQNMKYNKN 135
Query: 139 TRNYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGR 198
RNYV ++YL Y+Y + F +K GRYLS M + SG TQGF++ + K L WFSSFGR
Sbjct: 136 VRNYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQY-KKARLTWFSSFGR 194
Query: 199 ALAAGQWIRDWYAPIVTEDG-------------RKDVDYGIHAVQLYFSNKHVQATPFFY 245
A A G ++ DW+A T G + V YG HAVQL + F+Y
Sbjct: 195 AFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYY 254
Query: 246 FSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVY-----AKDLYDVVWR-NSKIG 299
SP+ + APG+KI DSNP F G G RS T I FP+Y K V++ ++
Sbjct: 255 LSPQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPAT 314
Query: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
+ G +L+I QRFD N +N +Y+ F NAN IG GNP + SNS+Y A+
Sbjct: 315 QNGQNLIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGTALK 374
Query: 360 ADSVSGYVFGGGVY--RGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYE 417
D+ + ++ GG + + F W +Y+ + + E + LGY++ + S V+L YY
Sbjct: 375 RDAATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYG 434
Query: 418 VSMHTGYKVNDLTSPFNKAFKANTQDRSNLMVSV 451
V + G+K + P K F A DRS L ++
Sbjct: 435 VYTNKGFKPGE-NGPVPKDFPALYSDRSALYTAL 467
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 251 bits (640), Expect = 2e-65
Identities = 155/452 (34%), Positives = 230/452 (50%), Gaps = 23/452 (5%)
Query: 21 LLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSL 80
L F+ K +G + S +GFN K+N + GI+P F T L + +LLPK + H L
Sbjct: 18 LQGFEAKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFSLLPKKVSDHVL 77
Query: 81 KIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGDAPWKDSRIESDAHTR 140
K +GG++G++ YD TK D + F+G + L + ++ + + R
Sbjct: 78 KGKIGGMVGSIFYDGTKKFEDGSVAYNLFGYYDGFMGVYTNILQTDSLETQNMKHNKNVR 137
Query: 141 NYVLYNSYLFYSYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRAL 200
NYV ++YL Y+Y + F +K GRYLS M + SG TQGF++ + L WFSS+GRA
Sbjct: 138 NYVFSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQVSGQY-KHARLTWFSSWGRAF 196
Query: 201 AAGQWIRDWYAPIVTEDG-------------RKDVDYGIHAVQLYFSNKHVQATPFFYFS 247
A G ++ DW+A T G + V YG HAVQL + F+Y S
Sbjct: 197 AYGSFLMDWFAARTTYSGGFTKNNNGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLS 256
Query: 248 PKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVY-----AKDLYDVVWR-NSKIGEW 301
P+ + APG+KI DSNP F G G RS T I FP+Y K V+R ++ +
Sbjct: 257 PQIFNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYRYDTPATQN 316
Query: 302 GASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVTAD 361
G +L+I QRFD N +N +Y+ F NAN IG GNP + SNS+Y A+ D
Sbjct: 317 GQNLIIRQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGTALKRD 376
Query: 362 SVSGYVFGGGVY--RGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDVNLQYYEVS 419
+ + ++ GG + + F W +Y+ + + E + LGY++ + S V+L YY V
Sbjct: 377 AATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVH 436
Query: 420 MHTGYKVNDLTSPFNKAFKANTQDRSNLMVSV 451
+ G+K + P K F A DRS L ++
Sbjct: 437 TNKGFKPGE-NGPVPKNFPALYSDRSALYTAL 467
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 188 bits (478), Expect = 1e-46
Identities = 158/548 (28%), Positives = 233/548 (41%), Gaps = 124/548 (22%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
+LK LPLLF + L A Y+ G +FSKVGFN S +N +GI+PT TFV
Sbjct: 12 LLKRLTLPLLFTT-----GSLGAVTYEVHGDFINFSKVGFNRSPINPVKGIYPTETFVNL 66
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTK----------------------- 97
T KL+ +L + VGG+LG YD+T+
Sbjct: 67 TGKLEGSVHL------GRGWTVNVGGVLGGQVYDNTRYDRWAKDFTPPSYWDKTSCGTDS 120
Query: 98 -TLIDQAT----HQVYGSEL------FFFIGRWWGYLGDAPWKDSRIESDAHTRNYVLYN 146
+L AT Q G + + ++G W G + + + H+R Y +Y
Sbjct: 121 LSLCMNATKMWQQQGPGGIIDPRGIGYMYMGEWNGLFPN--YYPANAYLPGHSRRYEVYK 178
Query: 147 SYLFYSYGDKFHLKLGRY----LSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAA 202
+ L Y D+ H+ +GR+ MD++ QGF +K+ + FSS+GR +A
Sbjct: 179 ANLTYD-SDRVHMVMGRFDVTEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSSWGRGIAD 237
Query: 203 GQWIRDWYAPIVTEDGRKDVDYGIH-AVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHID 261
GQW+ Y ++ +GIH A +Y K++ P+ Y P PG KI D
Sbjct: 238 GQWLFPIY---------REKPWGIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYD 288
Query: 262 SNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEW-------------------- 301
+NP+F G G+R++T V LYD W N++ G +
Sbjct: 289 TNPEFSGRGIRNKTTFYV--------LYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGL 340
Query: 302 ----GASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSN---SIYGLVF 354
GA+L +H D N + G Y N GN N +G +GNP+ D IY L F
Sbjct: 341 QGPGGATLYLHHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVALDGIEQWVGGIYSLGF 400
Query: 355 S---NAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDV 411
+ N AD+ + YV GGG + F W + R+T A RA E I ++L Y++ +
Sbjct: 401 AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGL 460
Query: 412 NLQYYEVSMHTGYK-----VNDLTSPFN--------KAF-----------KANTQDRSNL 447
L + E + GY + P N AF K+ TQDRS+L
Sbjct: 461 KLVWLEFQIRAGYNPGTGFLGPNGQPLNLNNGLFESSAFAQGPQNMGGIAKSITQDRSHL 520
Query: 448 MVSVKFFF 455
M + + F
Sbjct: 521 MTHISYSF 528
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 186 bits (472), Expect = 5e-46
Identities = 139/466 (29%), Positives = 219/466 (46%), Gaps = 36/466 (7%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDS 68
LLF + ++ F+ G S++K GFN+ + + I+PT ++ + +L +
Sbjct: 14 LLFSGLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 73
Query: 69 NLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELF-FFIGRWWGYLGDAP 127
L L+ VG ++ AL YDST + + GS F G +W Y+G
Sbjct: 74 GLYK------GLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIG--- 124
Query: 128 WKDSRIESDAHT-RNYVLYNSYLFYSYG-DKFH--LKLGRY-LSNMDFMSGYTQGFELDY 182
W + R +++N++L Y+Y DKF +K GRY D+ + YTQG E
Sbjct: 125 WYAGHSGLNVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFV 184
Query: 183 KINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATP 242
K L+ S RA A+ W WY G+ + L + +++ P
Sbjct: 185 KYKDT-RLRVMYSDARASASSDWF--WYFGRYYTSGK-----ALMIADLKYEKDNLKINP 236
Query: 243 FFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYD---VVWRNSKIG 299
+FY + APGI I D+NP F G R FP++A ++++ +G
Sbjct: 237 YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLG 296
Query: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
+ G + RF N++ FG Y+N GNAN IG YG+P+ ++I +NSIY +N V
Sbjct: 297 KSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVG 356
Query: 360 ADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSF-ASVDVNLQYYEV 418
AD ++G+++ G YRGF W ILGR+T + RA ERS+ L L Y + +D+ L+YY
Sbjct: 357 ADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGN 416
Query: 419 SMHTGYKVN--------DLTSPFNKAFKANT-QDRSNLMVSVKFFF 455
GY + D P + N DRS++M ++ + F
Sbjct: 417 ITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNITYGF 462
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 186 bits (472), Expect = 5e-46
Identities = 139/466 (29%), Positives = 218/466 (45%), Gaps = 36/466 (7%)
Query: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVDS 68
LLF S+ ++ F+ G S++K GFN+ + + I+PT ++ + +L +
Sbjct: 29 LLFSSLFLSKLQAYKFNMSIVGKVSSYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSM 88
Query: 69 NLLPKNIEKHSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELF-FFIGRWWGYLGDAP 127
L L+ VG ++ AL YDST + + GS F G +W Y+G
Sbjct: 89 GLYK------GLRAEVGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIG--- 139
Query: 128 WKDSRIESDAHT-RNYVLYNSYLFYSYG-DKFH--LKLGRY-LSNMDFMSGYTQGFELDY 182
W R +++N++L Y+Y DKF +K GRY D+ + YTQG E
Sbjct: 140 WYAGHSGLQVQKPRLAMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFV 199
Query: 183 KINSKIALKWFSSFGRALAAGQWIRDWYAPIVTEDGRKDVDYGIHAVQLYFSNKHVQATP 242
K +S RA A+ W WY G+ + L + +++ P
Sbjct: 200 KYKDTRFRVMYSD-ARASASSDWF--WYFGRYYTSGK-----ALMVADLKYEKDNLKINP 251
Query: 243 FFYFSPKTYEAPGIKIHIDSNPKFRGLGLRSQTLINVIFPVYAKDLYD---VVWRNSKIG 299
+FY + APGI I D+NP F G R FP++A ++++ +G
Sbjct: 252 YFYAIFQRMYAPGINITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLG 311
Query: 300 EWGASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSNSIYGLVFSNAVT 359
+ G + RF N++ FG Y+N GNAN IG YG+P+ ++I +NSIY +N V
Sbjct: 312 KSGQTYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVG 371
Query: 360 ADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSF-ASVDVNLQYYEV 418
AD ++G+++ G YRGF W ILGR+T + RA ERS+ L L Y + +D+ L+YY
Sbjct: 372 ADVINGFLYVGSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGN 431
Query: 419 SMHTGYKVN--------DLTSPFNKAFKANT-QDRSNLMVSVKFFF 455
GY + D P + N DRS++M ++ + F
Sbjct: 432 ITKKGYCIGYCGMYVPVDPNGPGTQPLTHNVYSDRSHIMFNIAYGF 477
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 185 bits (469), Expect = 1e-45
Identities = 162/548 (29%), Positives = 238/548 (42%), Gaps = 124/548 (22%)
Query: 1 MLKFQKLPLLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTA 60
+LK LPLLF + L A Y+ G +F+KVGFNHS +N +GI+PT TFV
Sbjct: 12 LLKRFTLPLLFTT-----GSLGAVTYEVHGDFINFAKVGFNHSPINPVKGIYPTETFVNL 66
Query: 61 TIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTK----------------------- 97
T KL+ +L + +GG+LG AYD TK
Sbjct: 67 TGKLEGSVHL------GRGWTVNLGGVLGGQAYDGTKYDRWAKDFTPPSYWDKTSCGTDS 120
Query: 98 -TLIDQATHQVYGSELFFFI---GRWWGYLGDAPWKD---SRIESDAH----TRNYVLYN 146
+L AT S I G W Y+G+ W + ++A+ +R Y +Y
Sbjct: 121 MSLCMNATKMWQQSGPGGVINPRGIGWEYMGE--WNGLFPNYYPANAYLPGGSRRYQVYK 178
Query: 147 SYLFYSYGDKFHLKLGRY----LSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAA 202
+ L Y D+ H+ +GR+ MD++ QGF +K+ + FS +GR +A
Sbjct: 179 ANLTYD-SDRVHMVMGRFDITEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSGWGRGIAD 237
Query: 203 GQWIRDWYAPIVTEDGRKDVDYGIH-AVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHID 261
GQW+ Y ++ +G+H A +Y K++ P+ Y P PG KI D
Sbjct: 238 GQWLFPIY---------REKPWGVHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYD 288
Query: 262 SNPKFRGLGLRSQTLINVIFPVYAKDLYDVVWRNSKIGEW-------------------- 301
+NP+F G G+R++T YA LYD W N++ G +
Sbjct: 289 TNPEFSGRGIRNRTTF------YA--LYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGL 340
Query: 302 ----GASLLIHQRFDCNEFNFGFGYYQNFGNANARIGWYGNPIPFDIRSN---SIYGLVF 354
GA+LL+ D N + G Y N GN N +G +GNP+ D SIY L F
Sbjct: 341 QGPGGATLLLRHHIDINNYFVVGGAYLNIGNPNMNLGTWGNPVAVDGIEQWVGSIYSLGF 400
Query: 355 S---NAVTADSVSGYVFGGGVYRGFLWGILGRYTYATRASERSINLHLGYRWGSFASVDV 411
+ N AD+ + YV GGG + F W + R+T A RA E I ++L Y++ +
Sbjct: 401 AGIDNITDADAFTEYVKGGGKHGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGL 460
Query: 412 NLQYYEVSMHTGYK------------VNDLTSPF-NKAF-----------KANTQDRSNL 447
L + E + GY +N T F + AF K+ TQDRS+L
Sbjct: 461 KLVWLEFQIRAGYNPGTGFLGPNGQPLNLNTGLFESSAFAQGPQNMGGIAKSITQDRSHL 520
Query: 448 MVSVKFFF 455
M + + F
Sbjct: 521 MTHISYSF 528
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,075,662
Number of Sequences: 1026957
Number of extensions: 13368866
Number of successful extensions: 27118
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27036
Number of HSP's gapped (non-prelim): 20
length of query: 455
length of database: 324,149,939
effective HSP length: 124
effective length of query: 331
effective length of database: 196,807,271
effective search space: 65143206701
effective search space used: 65143206701
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)