BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645402|ref|NP_207576.1| hypothetical protein
[Helicobacter pylori 26695]
         (165 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207576.1|  (NC_000915) hypothetical protein [Helicoba...   325  1e-88
ref|NP_223438.1|  (NC_000921) putative [Helicobacter pylori ...   318  2e-86
ref|NP_014971.1|  (NC_001147) class V myosin; Myo2p [Sacchar...    40  0.010
emb|CAA89973.1|  (Z49821) MYO2 [Saccharomyces cerevisiae] >g...    40  0.010

>ref|NP_207576.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64617 hypothetical protein HP0783 - Helicobacter pylori (strain 26695)
 gb|AAD07836.1| (AE000590) H. pylori predicted coding region HP0783 [Helicobacter
           pylori 26695]
          Length = 165

 Score =  325 bits (833), Expect = 1e-88
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MALPFYFVSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDL 60
           MALPFYFVSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDL
Sbjct: 1   MALPFYFVSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDL 60

Query: 61  HEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQID 120
           HEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQID
Sbjct: 61  HEKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQID 120

Query: 121 KQLDSFKQDNLIDVKPLKDVLAQLEAELRKAINFQKQWLNSTKPN 165
           KQLDSFKQDNLIDVKPLKDVLAQLEAELRKAINFQKQWLNSTKPN
Sbjct: 121 KQLDSFKQDNLIDVKPLKDVLAQLEAELRKAINFQKQWLNSTKPN 165



>ref|NP_223438.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71896 hypothetical protein jhp0720 - Helicobacter pylori (strain J99)
 gb|AAD06294.1| (AE001503) putative [Helicobacter pylori J99]
          Length = 175

 Score =  318 bits (814), Expect = 2e-86
 Identities = 160/164 (97%), Positives = 163/164 (98%)

Query: 2   ALPFYFVSALAAIDIDEVTEAQANSVKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH 61
           ALPFYFVSALAAIDIDEVTEAQANS+KLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH
Sbjct: 12  ALPFYFVSALAAIDIDEVTEAQANSIKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLH 71

Query: 62  EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGETIKKALGEPVFPQDALDAALQIDK 121
           EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGE IKKALG+PVFPQDALDAALQIDK
Sbjct: 72  EKIKHLRLILEPKPKDKENNPNLKDHQGSETIEIGEAIKKALGDPVFPQDALDAALQIDK 131

Query: 122 QLDSFKQDNLIDVKPLKDVLAQLEAELRKAINFQKQWLNSTKPN 165
           QLDSFKQDNLIDVKPLKDVLAQLEAELRKAI+FQKQWLNSTKPN
Sbjct: 132 QLDSFKQDNLIDVKPLKDVLAQLEAELRKAIDFQKQWLNSTKPN 175



>ref|NP_014971.1| (NC_001147) class V myosin; Myo2p [Saccharomyces cerevisiae]
 sp|P19524|MYS2_YEAST Myosin-2 isoform
 pir||A38454 myosin MYO2 - yeast (Saccharomyces cerevisiae)
 gb|AAA34810.1| (M35532) myosin 1 isoform (MYO2) [Saccharomyces cerevisiae]
 emb|CAA99646.1| (Z75234) ORF YOR326w [Saccharomyces cerevisiae]
          Length = 1574

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 40/146 (27%), Positives = 72/146 (48%), Gaps = 23/146 (15%)

Query: 21   EAQANSVKLSDQLVSLSDKLLEKAVDRGRN-TDHLKDLNDLHEKIKHLRLILEPKPKDKE 79
            +A A SV   + L  +S KL  K ++  +N    +K+  ++ E+IK L++ +E   K +E
Sbjct: 927  KADAKSV---NHLKEVSYKLENKVIELTQNLASKVKENKEMTERIKELQVQVEESAKLQE 983

Query: 80   NNPNLK-------DHQGSETIEIGETIKKALGEPVFPQDALDAALQID---KQLDSFKQD 129
               N+K       D+Q S+ +E+ +TI+  L      Q   DA L+++   KQ D  K++
Sbjct: 984  TLENMKKEHLIDIDNQKSKDMELQKTIENNLQST--EQTLKDAQLELEDMVKQHDELKEE 1041

Query: 130  NLIDVKPLKDVLAQLEAELRKAINFQ 155
            +       K  L +LE   +  + +Q
Sbjct: 1042 S-------KKQLEELEQTKKTLVEYQ 1060



>emb|CAA89973.1| (Z49821) MYO2 [Saccharomyces cerevisiae]
 emb|CAA99648.1| (Z75235) ORF YOR326w [Saccharomyces cerevisiae]
          Length = 898

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 40/146 (27%), Positives = 72/146 (48%), Gaps = 23/146 (15%)

Query: 21  EAQANSVKLSDQLVSLSDKLLEKAVDRGRN-TDHLKDLNDLHEKIKHLRLILEPKPKDKE 79
           +A A SV   + L  +S KL  K ++  +N    +K+  ++ E+IK L++ +E   K +E
Sbjct: 251 KADAKSV---NHLKEVSYKLENKVIELTQNLASKVKENKEMTERIKELQVQVEESAKLQE 307

Query: 80  NNPNLK-------DHQGSETIEIGETIKKALGEPVFPQDALDAALQID---KQLDSFKQD 129
              N+K       D+Q S+ +E+ +TI+  L      Q   DA L+++   KQ D  K++
Sbjct: 308 TLENMKKEHLIDIDNQKSKDMELQKTIENNLQST--EQTLKDAQLELEDMVKQHDELKEE 365

Query: 130 NLIDVKPLKDVLAQLEAELRKAINFQ 155
           +       K  L +LE   +  + +Q
Sbjct: 366 S-------KKQLEELEQTKKTLVEYQ 384



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,561,220
Number of Sequences: 1026957
Number of extensions: 4080347
Number of successful extensions: 11723
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11721
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 324,149,939
effective HSP length: 112
effective length of query: 53
effective length of database: 209,130,755
effective search space: 11083930015
effective search space used: 11083930015
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 92 (40.0 bits)