BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645404|ref|NP_207578.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(184 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207578.1| (NC_000915) conserved hypothetical secrete... 369 e-101
ref|NP_223440.1| (NC_000921) putative [Helicobacter pylori ... 342 1e-93
gb|AAK37432.1|AF254134_2 (AF254134) unknown [Helicobacter m... 117 8e-26
ref|NP_282095.1| (NC_002163) putative periplasmic protein [... 66 2e-10
sp|P39917|LOLA_COXBU Outer-membrane lipoproteins carrier pr... 55 5e-07
ref|NP_251304.1| (NC_002516) periplasmic chaperone LolA [Ps... 43 0.002
ref|NP_273666.1| (NC_003112) outer membrane lipoprotein car... 42 0.003
ref|NP_283623.1| (NC_003116) putative periplasmic carrier p... 42 0.004
>ref|NP_207578.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25474|LOLA_HELPY Probable outer-membrane lipoproteins carrier protein precursor
pir||A64618 conserved hypothetical secreted protein HP0785 - Helicobacter
pylori (strain 26695)
gb|AAD07829.1| (AE000590) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 184
Score = 369 bits (946), Expect = e-101
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MRAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKA 60
MRAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKA
Sbjct: 1 MRAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKA 60
Query: 61 KAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDGS 120
KAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDGS
Sbjct: 61 KAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDGS 120
Query: 121 FKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENID 180
FKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENID
Sbjct: 121 FKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENID 180
Query: 181 IVRQ 184
IVRQ
Sbjct: 181 IVRQ 184
>ref|NP_223440.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZL58|LOLA_HELPJ Probable outer-membrane lipoproteins carrier protein precursor
pir||B71897 hypothetical protein jhp0722 - Helicobacter pylori (strain J99)
gb|AAD06296.1| (AE001503) putative [Helicobacter pylori J99]
Length = 184
Score = 342 bits (877), Expect = 1e-93
Identities = 170/184 (92%), Positives = 176/184 (95%)
Query: 1 MRAFLKILMVLIFMSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVYYGVLKA 60
M+AFLKI MVLIF+ VA+AKNP TLSKEEEVLQ+LQSFSAHFKQVLKNEKPLVYYGVLKA
Sbjct: 1 MKAFLKICMVLIFVGVAHAKNPLTLSKEEEVLQNLQSFSAHFKQVLKNEKPLVYYGVLKA 60
Query: 61 KAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTILKRLKKQDDGS 120
KAPNWALWVYEKPLKKEIYMNDKEVV+YEPNLFQATITPLKDKTDFFTILK+LKKQ DGS
Sbjct: 61 KAPNWALWVYEKPLKKEIYMNDKEVVVYEPNLFQATITPLKDKTDFFTILKQLKKQTDGS 120
Query: 121 FKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENID 180
FKTTINKTTYRLVFKDGKPFSLEFKD MNNLVTITFSQAEINP I NEIFVF PKDENID
Sbjct: 121 FKTTINKTTYRLVFKDGKPFSLEFKDDMNNLVTITFSQAEINPKIPNEIFVFNPKDENID 180
Query: 181 IVRQ 184
IVRQ
Sbjct: 181 IVRQ 184
>gb|AAK37432.1|AF254134_2 (AF254134) unknown [Helicobacter mustelae]
Length = 196
Score = 117 bits (292), Expect = 8e-26
Identities = 63/151 (41%), Positives = 85/151 (55%), Gaps = 2/151 (1%)
Query: 35 LQSFSAHFKQVL-KNEKPLVYYGVLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLF 93
L S A F Q+ + + L+Y G L AK P+ A W+YE PLKK IY+N KE +IYEP L
Sbjct: 47 LISIEADFVQITHQGSQKLIYTGKLYAKNPSLAKWIYETPLKKTIYLNKKEAIIYEPMLE 106
Query: 94 QATITPLKDKTDFFTILKRLKKQDDGSFKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVT 153
QAT T L + DFF IL + DG + + Y L F P + F D + N +
Sbjct: 107 QATFTHLTKQVDFFAILHKATLGQDGKYHAKVGDAQYVLSFAKNLPHKITFIDELQNKIE 166
Query: 154 ITFSQAEINPTIANEIFVFKPKDENIDIVRQ 184
I ++NPT+++ IFVF P + NIDI+ Q
Sbjct: 167 IILKNLKVNPTLSDGIFVFTPPN-NIDIIEQ 196
>ref|NP_282095.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
sp|Q9PNZ0|LOLA_CAMJE Probable outer-membrane lipoproteins carrier protein precursor
pir||F81368 probable periplasmic protein Cj0943 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73200.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 169
Score = 65.9 bits (159), Expect = 2e-10
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 34 HLQSFSAHFKQVLKNEKPLVYYGVLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLF 93
+ +FS++F Q++K++ + Y + + A W Y+ P KKEIY+N +V I E +L
Sbjct: 21 NFNTFSSNFTQIVKSKNSTLSYSGHFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLE 80
Query: 94 QATITPLKDKTDFFTILKRLKKQDDGSFKTTINKTTYRLVFKDGKPFSLEFKDGMNNLVT 153
Q + L + + I K+ D + Y + + S+ +KD N V
Sbjct: 81 QVIFSHLDNIPNLNEIFKKASLIDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVI 140
Query: 154 ITFSQAEINPTIANEIFVFKPKDENIDIVR 183
I + NP I +++F K +N DIVR
Sbjct: 141 INLNNQIKNPKINSDVFKAK-IPQNYDIVR 169
>sp|P39917|LOLA_COXBU Outer-membrane lipoproteins carrier protein precursor
pir||S43133 hypothetical protein Y - Coxiella burnetii
emb|CAA53290.1| (X75627) orf 211, orf Y [Coxiella burnetii]
Length = 211
Score = 54.7 bits (130), Expect = 5e-07
Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 26/209 (12%)
Query: 1 MRAFLKILMVLIF-MSVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVLKNEKPLVY---YG 56
++ + +L + +F +S + ++ ++L + +++ A F Q+ + + V +G
Sbjct: 4 IKILIGLLGIFLFSLSGIVSAQSDATTQLSQLLSNFRTYQAKFNQITFDGQDRVIQQSHG 63
Query: 57 VLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATITPLKDKTDFFTI------L 110
+ P W + P K+ I N K + +Y+ +L QAT PL KT+ +
Sbjct: 64 RVMIMRPGRFRWETDSPTKQIIITNGKTLWVYDVDLSQATQQPLAQKTNINPASLLSGSV 123
Query: 111 KRLKKQDDGSFKTTINKTTYRLVFKDGKPFS---LEFKDGMNNLVTIT------------ 155
K LK++ + T + T++LV GK + + K L +T
Sbjct: 124 KDLKQKFTITISPTPDAATFQLVPNLGKSLNFNWIRLKFSKKQLTEMTVLNNLDERSIFQ 183
Query: 156 FSQAEINPTIANEIFVFKPKDENIDIVRQ 184
FSQ ++N +++ +F FKP ID+V+Q
Sbjct: 184 FSQIKVNAPLSSTLFEFKP-SRGIDVVKQ 211
>ref|NP_251304.1| (NC_002516) periplasmic chaperone LolA [Pseudomonas aeruginosa]
pir||D83318 periplasmic chaperone LolA PA2614 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06002.1|AE004690_2 (AE004690) periplasmic chaperone LolA [Pseudomonas aeruginosa]
Length = 208
Score = 43.1 bits (100), Expect = 0.002
Identities = 42/194 (21%), Positives = 80/194 (40%), Gaps = 26/194 (13%)
Query: 15 SVAYAKNPSTLSKEEEVLQHLQSFSAHFKQVL---KNEKPLVYYGVLKAKAPNWALWVYE 71
S+A+A + + + + +L Q+ +A F Q+ + G L K P W +
Sbjct: 17 SLAHADDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTD 76
Query: 72 KPLKKEIYMNDKEVVIYEPNLFQATITPLKDK---TDFFTILKRLKKQDDGSFKTTINK- 127
P ++ + N ++V +Y+P+L Q TI L + T + + K + SF T +
Sbjct: 77 APNEQLLISNGEKVWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISE-SFAITYKEG 135
Query: 128 -----------------TTYRLVFKDGKPFSLEFKDGMNNLVTITFSQAEINPTIANEIF 170
T RL F+ GK ++ DG+ I F ++N + + F
Sbjct: 136 GNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQMIDGVGQRTNILFFDVKMNEALDAKQF 195
Query: 171 VFKPKDENIDIVRQ 184
F +D++++
Sbjct: 196 TF-DVPPGVDVIQE 208
>ref|NP_273666.1| (NC_003112) outer membrane lipoprotein carrier protein [Neisseria
meningitidis MC58]
sp|P57068|LOLA_NEIMB Outer-membrane lipoproteins carrier protein precursor
pir||C81178 outer membrane lipoprotein carrier protein NMB0622 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF41048.1| (AE002417) outer membrane lipoprotein carrier protein [Neisseria
meningitidis MC58]
Length = 207
Score = 42.4 bits (98), Expect = 0.003
Identities = 36/165 (21%), Positives = 67/165 (39%), Gaps = 22/165 (13%)
Query: 39 SAHFKQVLKNEKPL-VYYGVLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATI 97
S F Q ++++K +G K P W Y KP ++ I + + V +Y+ +L Q T
Sbjct: 42 SGSFTQTVQSKKKTQTAHGTFKILRPGLFKWEYTKPYRQTIVGDGQTVWLYDVDLAQVTK 101
Query: 98 ---------TPLKDKTDFFTILKRLKKQDDGSF-----------KTTINKTTYRLVFKDG 137
+P ++ + ++DGS + R+ FK G
Sbjct: 102 SSQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKGG 161
Query: 138 KPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENIDIV 182
+++ KD N +I+F NP ++ F F P + +D++
Sbjct: 162 NLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTP-PKGVDVL 205
>ref|NP_283623.1| (NC_003116) putative periplasmic carrier protein [Neisseria
meningitidis Z2491]
sp|P57067|LOLA_NEIMA Outer-membrane lipoproteins carrier protein precursor
pir||C81928 probable periplasmic carrier protein NMA0830 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB84112.1| (AL162754) putative periplasmic carrier protein [Neisseria
meningitidis Z2491]
Length = 207
Score = 41.6 bits (96), Expect = 0.004
Identities = 36/165 (21%), Positives = 66/165 (39%), Gaps = 22/165 (13%)
Query: 39 SAHFKQVLKNEKPL-VYYGVLKAKAPNWALWVYEKPLKKEIYMNDKEVVIYEPNLFQATI 97
S F Q ++++K +G K P W Y P K+ I + + V +Y+ +L Q T
Sbjct: 42 SGSFTQTVQSKKKTQTAHGTFKILRPGLFKWEYTSPYKQTIVGDGQTVWLYDVDLAQVTK 101
Query: 98 ---------TPLKDKTDFFTILKRLKKQDDGSF-----------KTTINKTTYRLVFKDG 137
+P ++ + ++DGS + R+ FK G
Sbjct: 102 SSQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKGG 161
Query: 138 KPFSLEFKDGMNNLVTITFSQAEINPTIANEIFVFKPKDENIDIV 182
+++ KD N +I+F NP ++ F F P + +D++
Sbjct: 162 NLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTP-PKGVDVL 205
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,155,998
Number of Sequences: 1026957
Number of extensions: 4788785
Number of successful extensions: 10694
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10688
Number of HSP's gapped (non-prelim): 10
length of query: 184
length of database: 324,149,939
effective HSP length: 114
effective length of query: 70
effective length of database: 207,076,841
effective search space: 14495378870
effective search space used: 14495378870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)