BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645407|ref|NP_207581.1| hypothetical protein
[Helicobacter pylori 26695]
(499 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207581.1| (NC_000915) hypothetical protein [Helicoba... 1060 0.0
ref|NP_223443.1| (NC_000921) putative Outer membrane protei... 1030 0.0
ref|NP_207874.1| (NC_000915) hypothetical protein [Helicoba... 385 e-106
ref|NP_223061.1| (NC_000921) putative Outer membrane protei... 384 e-105
ref|NP_223437.1| (NC_000921) putative Outer membrane protei... 330 2e-89
ref|NP_207575.1| (NC_000915) hypothetical protein [Helicoba... 325 1e-87
ref|NP_223568.1| (NC_000921) putative Outer membrane protei... 290 2e-77
ref|NP_207706.1| (NC_000915) hypothetical protein [Helicoba... 289 5e-77
ref|NP_223811.1| (NC_000921) putative Outer membrane protei... 245 1e-63
ref|NP_222916.1| (NC_000921) putative Outer membrane protei... 244 1e-63
ref|NP_207958.1| (NC_000915) hypothetical protein [Helicoba... 244 2e-63
ref|NP_207007.1| (NC_000915) hypothetical protein [Helicoba... 242 9e-63
ref|NP_207284.1| (NC_000915) hypothetical protein [Helicoba... 172 8e-42
ref|NP_223157.1| (NC_000921) putative Outer membrane protei... 170 4e-41
ref|NP_223156.1| (NC_000921) Outer membrane protein [Helico... 154 2e-36
ref|NP_207283.1| (NC_000915) hypothetical protein [Helicoba... 153 5e-36
>ref|NP_207581.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64618 hypothetical protein HP0788 - Helicobacter pylori (strain 26695)
gb|AAD07845.1| (AE000591) H. pylori predicted coding region HP0788 [Helicobacter
pylori 26695]
Length = 499
Score = 1060 bits (2741), Expect = 0.0
Identities = 499/499 (100%), Positives = 499/499 (100%)
Query: 1 MNYKVASAKNIATLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE 60
MNYKVASAKNIATLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE
Sbjct: 1 MNYKVASAKNIATLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE 60
Query: 61 TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA 120
TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA
Sbjct: 61 TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA 120
Query: 121 WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAH 180
WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAH
Sbjct: 121 WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAH 180
Query: 181 TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG 240
TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
Sbjct: 181 TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG 240
Query: 241 FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTI 300
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTI
Sbjct: 241 FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTI 300
Query: 301 TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF 360
TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF
Sbjct: 301 TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF 360
Query: 361 GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK 420
GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK
Sbjct: 361 GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK 420
Query: 421 LLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS 480
LLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
Sbjct: 421 LLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS 480
Query: 481 QPATDQDRSHIFTEIVWKL 499
QPATDQDRSHIFTEIVWKL
Sbjct: 481 QPATDQDRSHIFTEIVWKL 499
>ref|NP_223443.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71895 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06307.1| (AE001504) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 499
Score = 1030 bits (2662), Expect = 0.0
Identities = 485/499 (97%), Positives = 489/499 (97%)
Query: 1 MNYKVASAKNIATLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTE 60
MNYKVASA+NIATLLFL SQS+AFDLGKIAKIKAGAESFSKVGFNNKPINTNKG+YPTE
Sbjct: 1 MNYKVASARNIATLLFLFFSQSEAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGIYPTE 60
Query: 61 TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA 120
TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGK YGAM
Sbjct: 61 TFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKPYGAMT 120
Query: 121 WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAH 180
WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEAL ASTCAK YA H
Sbjct: 121 WNYVGYWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALAASTCAKTYADH 180
Query: 181 TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG 240
TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG
Sbjct: 181 TRNYVIYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRG 240
Query: 241 FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTI 300
FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFY IWNYKG+SIQPFVYFSPFNEYDPNFTI
Sbjct: 241 FAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTI 300
Query: 301 TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNF 360
TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGM AGKNAHSLMIKQKFEWNEYNF
Sbjct: 301 TYDSNPTFTGLGFRSQTDVTVLNPFYAKRFWDTYQFGMLAGKNAHSLMIKQKFEWNEYNF 360
Query: 361 GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK 420
GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK
Sbjct: 361 GFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRK 420
Query: 421 LLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS 480
LLWGLLGRLTYGPRANEQVLSLN GYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS
Sbjct: 421 LLWGLLGRLTYGPRANEQVLSLNLGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDS 480
Query: 481 QPATDQDRSHIFTEIVWKL 499
QPATDQDRSHIFTEIVWKL
Sbjct: 481 QPATDQDRSHIFTEIVWKL 499
>ref|NP_207874.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64655 hypothetical protein HP1083 - Helicobacter pylori (strain 26695)
gb|AAD08134.1| (AE000615) H. pylori predicted coding region HP1083 [Helicobacter
pylori 26695]
Length = 479
Score = 385 bits (990), Expect = e-106
Identities = 211/484 (43%), Positives = 290/484 (59%), Gaps = 34/484 (7%)
Query: 18 LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELL 77
LS+ QAFD KI+ AESFSKVGFN K I+ +G+YPTETF+T + + + + L
Sbjct: 20 LSASLQAFDY----KIEVSAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNI-YADFL 74
Query: 78 PKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQKPWA 137
PK GH L+G +GG G V YDSTK N+ G++ +NY+GYW G +G K
Sbjct: 75 PKGLKDQGHVLEGKIGGTLGGVAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRAL 127
Query: 138 SCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTR-NYVIYNAYLRYNYK 196
G + G S+ + +++ C A R NY++ NA+L Y YK
Sbjct: 128 LDGTSIHECALG-------------SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYK 174
Query: 197 DIFEIRGGRYESPADYMSGYNQGLDMTL-----NLGNFKFWWFSSFGRGFAYNEWLYNFY 251
DIF +GGRY+S A YMSGY QG +++ N G K WWFSS+GR FAY EW+Y+FY
Sbjct: 175 DIFLAKGGRYQSNAPYMSGYTQGFEISAKVKDKNEGIHKLWWFSSWGRAFAYGEWIYDFY 234
Query: 252 SPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGL 311
SP+T +KNG+T+N G+H + KG S+ PF FSP Y P + YDSNP F G+
Sbjct: 235 SPRT-VVKNGRTLNYGIHLVNYTYERKGVSVSPFFQFSPGTYYSPGVVVGYDSNPNFNGV 293
Query: 312 GFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNA 371
GFRS+T +L P + DTY++ + AG SL+I+Q+F++NE+NFG YK + NA
Sbjct: 294 GFRSETKAYILLPVHDPLRRDTYRYAIKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNA 353
Query: 372 NWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTY 431
N IG GN LG DFWTN+VY + +LS+++ A+A + + FGGGVH+K LWG L R T
Sbjct: 354 NAYIGTTGNPLGIDFWTNSVY-DIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTS 412
Query: 432 GPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATDQDRSHI 491
G ANE ++N GYK +K+ +A +K EY V+ H G+ +G P S+ A DRSH+
Sbjct: 413 GTLANEASAAVNVGYKISKSLTASVKLEYLGVMTHAGFTVGSYRPTPGSK-ALYSDRSHL 471
Query: 492 FTEI 495
T +
Sbjct: 472 MTTL 475
>ref|NP_223061.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71942 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05925.1| (AE001470) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 479
Score = 384 bits (987), Expect = e-105
Identities = 210/484 (43%), Positives = 291/484 (59%), Gaps = 34/484 (7%)
Query: 18 LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELL 77
LS+ QAFD KI+ AESFSKVGFN K I+ +G+YPTETF+T + + + + L
Sbjct: 20 LSASVQAFDY----KIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNI-YADFL 74
Query: 78 PKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQKPWA 137
KS GH L+G +GG G + YDSTK N+ G++ +NY+GYW G +G K
Sbjct: 75 SKSLKDQGHVLEGKVGGTIGGIAYDSTK--FNQG-----GSVIYNYIGYWDGYLGGKRAL 127
Query: 138 SCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTR-NYVIYNAYLRYNYK 196
G + G S+ + +++ C A R NY++ NA+L Y YK
Sbjct: 128 LDGTSIHECALG-------------SDGKVIDSIACGNARANKIRRNYLMNNAFLEYRYK 174
Query: 197 DIFEIRGGRYESPADYMSGYNQGLDMTL-----NLGNFKFWWFSSFGRGFAYNEWLYNFY 251
DIF +GGRY+S A YMS Y QG +++ N G+ K WWFSS+GR FAY EW+Y+FY
Sbjct: 175 DIFAAKGGRYQSNAPYMSSYTQGFEISAKIKDKNEGSHKLWWFSSWGRAFAYGEWIYDFY 234
Query: 252 SPKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGL 311
SP+T +KNG+T+N G+H + KG S+ PF FSP Y P + YDSNP F G+
Sbjct: 235 SPRT-VIKNGRTLNYGIHLVDYTYERKGVSVSPFFQFSPGTYYSPGVAVGYDSNPNFNGV 293
Query: 312 GFRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNA 371
GFRS+T +L P +A DTY++ + AG SL+I+Q+F++NE+NFG YK + NA
Sbjct: 294 GFRSETKAYILLPVHAPLKRDTYRYAVKAGTAGQSLLIRQRFDYNEFNFGGAFYKVWKNA 353
Query: 372 NWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTY 431
N IG GN LG DFWTN+VY + +LS+++ A+A + + FGGGVH+K LWG L R T
Sbjct: 354 NAYIGTTGNPLGIDFWTNSVY-DIGQALSHVVTADAVSGWVFGGGVHKKWLWGTLWRWTS 412
Query: 432 GPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATDQDRSHI 491
G ANE ++N GYK +K+ +A +K EY V+ H G+ +G P S+ A DRSH+
Sbjct: 413 GALANEASAAVNVGYKISKSLTASVKLEYLGVMTHSGFTVGSYRPTPGSK-ALYSDRSHL 471
Query: 492 FTEI 495
T +
Sbjct: 472 MTTL 475
>ref|NP_223437.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71896 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06302.1| (AE001503) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 455
Score = 330 bits (846), Expect = 2e-89
Identities = 186/484 (38%), Positives = 271/484 (55%), Gaps = 43/484 (8%)
Query: 14 LLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDF 73
LLF+ +Q+ L K AES SKVGFN+ +N+ +G++PT TF+T +QVD
Sbjct: 9 LLFVSILYNQSPLLAFDYKFSGVAESVSKVGFNHSKLNSKEGIFPTATFVTATIKLQVD- 67
Query: 74 TELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQ 133
+ LLPK+ H L +GG GA+ YDSTK I++ T + YG+ + +G W G +G
Sbjct: 68 SNLLPKNIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQIYGSELFYLIGRWWGFLGN 125
Query: 134 KPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRY 193
PW D + +++ AHTRNYV+YN+YL Y
Sbjct: 126 APWK--------------DSLIESD--------------------AHTRNYVLYNSYLFY 151
Query: 194 NYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGN-FKFWWFSSFGRGFAYNEWLYNFYS 252
+Y D F ++ GRY S D+MS Y QG ++ + + WFSSFGR A+ +W+ ++Y+
Sbjct: 152 SYGDKFHLKLGRYLSNMDFMSSYTQGFELDYKINSKIALKWFSSFGRALAFGQWIRDWYA 211
Query: 253 PKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLG 312
P T + + G+HA ++ K + PF YFSP P I DSNP F GLG
Sbjct: 212 P-IVTEDGRKEVYDGIHAAQLYFSSKHVQVMPFAYFSPKIYGAPGVKIHIDSNPKFKGLG 270
Query: 313 FRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNAN 372
R+QT + V+ P YAK +D Y G+ SL+I Q+F++NE+NFGFG Y++FGNAN
Sbjct: 271 LRAQTTINVIFPVYAKDLYDVYWRNSKIGEWGASLLIHQRFDYNEFNFGFGYYQNFGNAN 330
Query: 373 WMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG 432
IG++GN + F++ N+VY S + A+A + + FGGGV+R LWG+LGR TY
Sbjct: 331 ARIGWYGNPIPFNYRNNSVYGGV---FSNAITADAVSGYVFGGGVYRGFLWGILGRYTYA 387
Query: 433 PRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGW-NGPKLDSQPATDQDRSHI 491
RA+E+ ++LN GYK+ D+ EYY V MH GY++ + GP + A QDRS++
Sbjct: 388 TRASERSINLNLGYKWGSFARVDVNLEYYVVSMHNGYRLDYLTGPFNKAFKADAQDRSNL 447
Query: 492 FTEI 495
+
Sbjct: 448 MVSM 451
>ref|NP_207575.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64617 hypothetical protein HP0782 - Helicobacter pylori (strain 26695)
gb|AAD07835.1| (AE000590) H. pylori predicted coding region HP0782 [Helicobacter
pylori 26695]
Length = 455
Score = 325 bits (832), Expect = 1e-87
Identities = 184/484 (38%), Positives = 267/484 (55%), Gaps = 43/484 (8%)
Query: 14 LLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDF 73
LLF+ +Q+ L K AESFSKVGFN+ +N+ +G++PT TF+T +QVD
Sbjct: 9 LLFVSILYNQSPLLAFDYKFSGVAESFSKVGFNHSKLNSKEGIFPTATFVTATIKLQVD- 67
Query: 74 TELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQ 133
+ LLPK+ H L +GG GA+ YDSTK I++ T + YG+ + ++G W G +G
Sbjct: 68 SNLLPKNIEK--HSLKIGVGGILGALAYDSTKTLIDQATHQVYGSELFFFIGRWWGYLGD 125
Query: 134 KPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRY 193
PW + + AHTRNYV+YN+YL Y
Sbjct: 126 APWKDSRIESD----------------------------------AHTRNYVLYNSYLFY 151
Query: 194 NYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGN-FKFWWFSSFGRGFAYNEWLYNFYS 252
+Y D F ++ GRY S D+MSGY QG ++ + + WFSSFGR A +W+ ++Y+
Sbjct: 152 SYGDKFHLKLGRYLSNMDFMSGYTQGFELDYKINSKIALKWFSSFGRALAAGQWIRDWYA 211
Query: 253 PKTYTLKNGQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLG 312
P T + ++ G+HA ++ K PF YFSP P I DSNP F GLG
Sbjct: 212 P-IVTEDGRKDVDYGIHAVQLYFSNKHVQATPFFYFSPKTYEAPGIKIHIDSNPKFRGLG 270
Query: 313 FRSQTDVTVLNPFYAKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNAN 372
RSQT + V+ P YAK +D G+ SL+I Q+F+ NE+NFGFG Y++FGNAN
Sbjct: 271 LRSQTLINVIFPVYAKDLYDVVWRNSKIGEWGASLLIHQRFDCNEFNFGFGYYQNFGNAN 330
Query: 373 WMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG 432
IG++GN + FD +N++Y S + A++ + + FGGGV+R LWG+LGR TY
Sbjct: 331 ARIGWYGNPIPFDIRSNSIYGLV---FSNAVTADSVSGYVFGGGVYRGFLWGILGRYTYA 387
Query: 433 PRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMG-WNGPKLDSQPATDQDRSHI 491
RA+E+ ++L+ GY++ S D+ +YY V MH GYK+ P + A QDRS++
Sbjct: 388 TRASERSINLHLGYRWGSFASVDVNLQYYEVSMHTGYKVNDLTSPFNKAFKANTQDRSNL 447
Query: 492 FTEI 495
+
Sbjct: 448 MVSV 451
>ref|NP_223568.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||E71880 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06428.1| (AE001514) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 514
Score = 290 bits (743), Expect = 2e-77
Identities = 176/541 (32%), Positives = 262/541 (47%), Gaps = 95/541 (17%)
Query: 13 TLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVD 72
+LL L +AFD + E+FSK+GFNN INT KG+YPTE+F+ I+ QV
Sbjct: 13 SLLSFLLCPVEAFDY----RFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVK 68
Query: 73 FTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVG 132
LLPK H L SLGG A+ YD TK +IN+ GK +G++ N++G + G
Sbjct: 69 -VNLLPKG--TENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFF 125
Query: 133 QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLR 192
K T ++ + H R YV+ A+LR
Sbjct: 126 NKYLGPAYAGT------------------------------SQSASYHARPYVVDTAFLR 155
Query: 193 YNYKDIFEIRGGRYESPADYMSGYNQGLDM-----TLNLGNFKFWWFSSFGRGFAYNEWL 247
Y+YKD+F + GRYE+ D+MSG NQG ++ +FWW+SSFGRG A+N W+
Sbjct: 156 YDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWI 215
Query: 248 YNFYSPKTYTLKNGQT------INPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTIT 301
Y F++ Y K G IN G H ++YKG Q F YF+P P F +
Sbjct: 216 YEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLV 275
Query: 302 YDSNPTFTGLGFRSQTDVTVLNPFYAKRFW----------DTYQFGMPAGKNAHSLMIKQ 351
YD+N F +GFRSQ+ + P Y + ++ D+ G G+N +L I+Q
Sbjct: 276 YDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQ 335
Query: 352 KFEWNEYNFGFGIYKSFGNANWMIGYH----GNR-----------------LGFDFWTNT 390
F W+ +N+ G Y +FGN++ +G H GN +G+DFW NT
Sbjct: 336 VFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYISNEISVTTRHAGMIGYDFWDNT 395
Query: 391 VYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG--------PRANEQVLSL 442
Y ++++ +AN FT + GG+H++ W + GR+++ RANE L
Sbjct: 396 AYDGLADAIT---NANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQF 452
Query: 443 NFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATD-----QDRSHIFTEIVW 497
N Y FT++ + + YY +++GY+ G+ G + P D QDRS++ T +
Sbjct: 453 NASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTL 512
Query: 498 K 498
K
Sbjct: 513 K 513
>ref|NP_207706.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64634 hypothetical protein HP0914 - Helicobacter pylori (strain 26695)
gb|AAD07966.1| (AE000601) H. pylori predicted coding region HP0914 [Helicobacter
pylori 26695]
Length = 514
Score = 289 bits (740), Expect = 5e-77
Identities = 176/541 (32%), Positives = 262/541 (47%), Gaps = 95/541 (17%)
Query: 13 TLLFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVD 72
+LL L ++AFD + E+FSK+GFNN INT KG+YPTE+F+ I+ QV
Sbjct: 13 SLLSFLLCPAEAFDY----RFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVK 68
Query: 73 FTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVG 132
LLPK H L SLGG A+ YD TK IN+ GK +G++ N++G + G
Sbjct: 69 -VNLLPKG--TENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFF 125
Query: 133 QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLR 192
K T ++ + H R YV+ A+LR
Sbjct: 126 NKYLGPAYAGT------------------------------SQSASYHARPYVVDTAFLR 155
Query: 193 YNYKDIFEIRGGRYESPADYMSGYNQGLDM-----TLNLGNFKFWWFSSFGRGFAYNEWL 247
Y+YKD+F + GRYE+ D+MSG NQG ++ +FWW+SSFGRG A+N W+
Sbjct: 156 YDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWI 215
Query: 248 YNFYSPKTYTLKNGQT------INPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTIT 301
Y F++ Y K G IN G H ++YKG Q F YF+P P F +
Sbjct: 216 YEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLV 275
Query: 302 YDSNPTFTGLGFRSQTDVTVLNPFYAKRFW----------DTYQFGMPAGKNAHSLMIKQ 351
YD+N F +GFRSQ+ + P Y + ++ D+ G G+N +L I+Q
Sbjct: 276 YDTNRNFQNVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQ 335
Query: 352 KFEWNEYNFGFGIYKSFGNANWMIGYH----GNR-----------------LGFDFWTNT 390
F W+ +N+ G Y +FGN++ +G H GN +G+DFW NT
Sbjct: 336 VFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNT 395
Query: 391 VYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYG--------PRANEQVLSL 442
Y ++++ +AN FT + GG+H++ W + GR+++ RANE L
Sbjct: 396 AYDGLADAIT---NANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSLQF 452
Query: 443 NFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPATD-----QDRSHIFTEIVW 497
N Y FT++ + + YY +++GY+ G+ G + P D QDRS++ T +
Sbjct: 453 NASYAFTESILLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTL 512
Query: 498 K 498
K
Sbjct: 513 K 513
>ref|NP_223811.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71849 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06676.1| (AE001537) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 471
Score = 245 bits (625), Expect = 1e-63
Identities = 161/499 (32%), Positives = 240/499 (47%), Gaps = 64/499 (12%)
Query: 18 LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELL 77
LS+ Q F+ AK+ + S +GFN IN +G+YP + F TI Y+ + F+ LL
Sbjct: 14 LSTSLQGFE----AKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATIAGYLGLGFS-LL 68
Query: 78 PKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVGYWGGLVGQKPWA 137
PK + H L G +GG G++ YD TK F + G++A+N GY+ G +G
Sbjct: 69 PKKVS--DHVLKGKIGGMVGSIFYDGTKKFED-------GSVAYNLFGYYDGFMGV---- 115
Query: 138 SCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRYNYKD 197
Y + Q + + N + + + RNYV +AYL Y YK+
Sbjct: 116 -------------YTNILQTDSLETQNMK----------HNKNVRNYVFSDAYLEYAYKN 152
Query: 198 IFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKT-- 255
FEI+ GRY S Y SG QG ++ + + WFSS+GR FAY +L ++++ +T
Sbjct: 153 YFEIKAGRYLSTMPYKSGQTQGFQVSGQYKHARLTWFSSWGRAFAYGSFLMDWFAARTTY 212
Query: 256 ---YTLKN-------GQTINPGVHAFYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSN 305
+T N G+ + G HA + + I+ F Y SP P I +DSN
Sbjct: 213 SGGFTKNNNGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSN 272
Query: 306 PTFTGLGFRSQTDVTVLNPFY------AKRFWDTYQFGMPAGKNAHSLMIKQKFEWNEYN 359
P F+G GFRS T + P Y Y++ PA +N +L+I+Q+F+ N YN
Sbjct: 273 PNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYRYDTPATQNGQNLIIRQRFDINNYN 332
Query: 360 FGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVH- 418
YK F NAN IG GN G +N+VYA + + +A T+F GG H
Sbjct: 333 VSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGT---ALKRDAATIFLSCGGTHF 389
Query: 419 -RKLLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYKMGWNGPK 477
+K W + + + E ++ GYKFT+ S + YY V ++G+K G NGP
Sbjct: 390 AKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVHTNKGFKPGENGPV 449
Query: 478 LDSQPATDQDRSHIFTEIV 496
+ PA DRS ++T +V
Sbjct: 450 PKNFPALYSDRSALYTALV 468
>ref|NP_222916.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||B71963 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD05769.1| (AE001457) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 438
Score = 244 bits (624), Expect = 1e-63
Identities = 159/471 (33%), Positives = 241/471 (50%), Gaps = 49/471 (10%)
Query: 32 KIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGS 91
++ A SFS++ FN IN+ KG+YPT +++T +QVD + LLPK H L
Sbjct: 12 QVSARVGSFSRIAFNQSIINSKKGIYPTGSYVTTTGALQVD-SSLLPKGI--ENHKLGFG 68
Query: 92 LGGWGGAVIYDSTKDFINEVTGKT-YGAMAWNYVGYWGGLVGQKPWASCGLATGNLTQGQ 150
+GG GA+ YDSTK I+E K + W Y+G W G + Q + N T+ Q
Sbjct: 69 VGGEIGALAYDSTKFLIDEANPKAGFQPANWYYMGRWEGYLMQH--------SQNWTREQ 120
Query: 151 YDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRYNYKDIFEIRGGRYESPA 210
A + R YV+YN YL Y YKDIF I+ GRY S A
Sbjct: 121 K--------------------------AQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKA 154
Query: 211 DYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKTYTLKNGQTINPGVHA 270
++SG+NQG ++ FK WFS+FGR A +++ +FY+P Y Q IN G+H
Sbjct: 155 LFLSGFNQGFEIFYRWKKFKIVWFSTFGRALANEQYIRDFYAPVNYK----QKINYGMHN 210
Query: 271 FYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFYAKRF 330
F ++ K I PF++F P N P F IT+D+ + L +R QT P Y+
Sbjct: 211 FNLVYENKYIRIAPFIWFYPKNFNAPGFEITHDTKSYWKSL-WRIQTTFYAWFPLYSDYL 269
Query: 331 WDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLG--FDFWT 388
Y GK + +L + Q+ + Y FG+ +YK+FGNA+ +G++G+ + +D
Sbjct: 270 SKDYYRAALVGKKSAALFVFQRVNFRSYRFGWSVYKNFGNASVQLGWNGSPIDPFYDTKD 329
Query: 389 NTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKF 448
+T Y ++ S +AN+ T+ AF G + LL L G+LTY PRA+ Q L + F Y
Sbjct: 330 DTPYE---DAYSNFYNANSITINAFIGKSIKNLLVQLYGKLTYSPRADAQSLGVTFKYNL 386
Query: 449 TKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPA-TDQDRSHIFTEIVWK 498
K+ + Y + MH+GYK+G+ + A T Q+RS++ + + ++
Sbjct: 387 KKHIYFMLMVNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSMSYR 437
>ref|NP_207958.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64665 hypothetical protein HP1167 - Helicobacter pylori (strain 26695)
gb|AAD08213.1| (AE000622) H. pylori predicted coding region HP1167 [Helicobacter
pylori 26695]
Length = 471
Score = 244 bits (622), Expect = 2e-63
Identities = 167/512 (32%), Positives = 239/512 (46%), Gaps = 69/512 (13%)
Query: 9 KNIATLLFL---LSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTI 65
K + +LF LSS Q F+ AK+ + S +GFN IN +G+YP + F TI
Sbjct: 2 KKASQVLFFGAFLSSSLQGFE----AKLNGFVDQSSTIGFNQHKINKERGIYPMQQFATI 57
Query: 66 MAYMQVDFTELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMAWNYVG 125
Y+ + F+ LLPK + H L G +GG G++ YD TK F + ++A+N G
Sbjct: 58 AGYLGLGFS-LLPKKVS--DHVLKGKIGGMVGSIFYDGTKKFEDS-------SVAYNLFG 107
Query: 126 YWGGLVGQKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYV 185
Y+ G +G Y + Q++ N + Y + RNYV
Sbjct: 108 YYDGFMGG-----------------YTNILQSDDLATQNMK----------YNKNVRNYV 140
Query: 186 IYNAYLRYNYKDIFEIRGGRYESPADYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNE 245
+AYL Y YK+ FEI+ GRY S Y SG QG ++ + WFSSFGR FAY
Sbjct: 141 FSDAYLEYAYKNYFEIKAGRYLSTMPYKSGQTQGFQISGQYKKARLTWFSSFGRAFAYGS 200
Query: 246 WLYNFYSPKTYTLKNGQTINP-------------GVHAFYAIWNYKGWSIQPFVYFSPFN 292
+L ++++ +T T G T N G HA + + I+ F Y SP
Sbjct: 201 FLMDWFAART-TYSGGFTKNDKGGYDSHGRKVLYGTHAVQLTYKPHRFLIEGFYYLSPQI 259
Query: 293 EYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFY------AKRFWDTYQFGMPAGKNAHS 346
P I +DSNP F+G GFRS T + P Y Y++ PA +N +
Sbjct: 260 FNAPGVKIGWDSNPNFSGTGFRSDTAIIGFFPIYYPWMIVKSNGSPVYKYDTPATQNGQN 319
Query: 347 LMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDAN 406
L+I Q+F+ N YN YK F NAN IG GN G +N+VYA + + +
Sbjct: 320 LIILQRFDINNYNVSIAFYKVFQNANGWIGNMGNPSGVIMGSNSVYAGFTGT---ALKRD 376
Query: 407 AFTVFAFGGGVH--RKLLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVL 464
A T+F GG H +K W + + + E ++ GYKFT+ S + YY V
Sbjct: 377 AATIFLSCGGTHFAKKFTWKFATQYSNSVVSWEARAMISLGYKFTEYLSGSVDLAYYGVY 436
Query: 465 MHQGYKMGWNGPKLDSQPATDQDRSHIFTEIV 496
++G+K G NGP PA DRS ++T +V
Sbjct: 437 TNKGFKPGENGPVPKDFPALYSDRSALYTALV 468
>ref|NP_207007.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64546 hypothetical protein HP0209 - Helicobacter pylori (strain 26695)
gb|AAD07285.1| (AE000541) H. pylori predicted coding region HP0209 [Helicobacter
pylori 26695]
Length = 450
Score = 242 bits (617), Expect = 9e-63
Identities = 158/471 (33%), Positives = 239/471 (50%), Gaps = 49/471 (10%)
Query: 32 KIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGS 91
+I A SFS++ FN IN+ KG+YPT +++T +QVD + LLPK H L
Sbjct: 24 QISARVGSFSRIAFNQSVINSKKGIYPTGSYVTTTGALQVDLS-LLPKGI--ENHKLGFG 80
Query: 92 LGGWGGAVIYDSTKDFINEVTGKT-YGAMAWNYVGYWGGLVGQKPWASCGLATGNLTQGQ 150
+GG G++ YDSTK ++E K + W Y+G W G + Q + N T+ Q
Sbjct: 81 VGGEIGSLAYDSTKFLMDEANPKAGFQPANWYYMGRWEGYLMQH--------SQNWTREQ 132
Query: 151 YDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRYNYKDIFEIRGGRYESPA 210
A + R YV+YN YL Y YKDIF I+ GRY S A
Sbjct: 133 K--------------------------AQNARPYVLYNLYLDYQYKDIFGIKLGRYPSKA 166
Query: 211 DYMSGYNQGLDMTLNLGNFKFWWFSSFGRGFAYNEWLYNFYSPKTYTLKNGQTINPGVHA 270
++SG+NQG ++ F+ WFS+FGR A + + +FY+P Y Q IN G+H
Sbjct: 167 LFLSGFNQGFEVFYRWKKFRIEWFSTFGRALANEQSIRDFYAPVNYK----QKINYGMHN 222
Query: 271 FYAIWNYKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTDVTVLNPFYAKRF 330
I+ K + PF++F P N P F IT+D+ + L +R QT P Y+
Sbjct: 223 LNLIYENKYIRVAPFIWFYPKNFNAPGFEITHDTKSYWESL-WRIQTTFYAWFPLYSDYL 281
Query: 331 WDTYQFGMPAGKNAHSLMIKQKFEWNEYNFGFGIYKSFGNANWMIGYHGNRLG--FDFWT 388
Y GK + SL + Q+ + Y FG+ +YK+FGN N +G++G+ + +D
Sbjct: 282 SKDYYRASLIGKKSASLFVFQRVHFRSYRFGWSVYKNFGNGNAQLGWNGSPVDPFYDTKD 341
Query: 389 NTVYANTLNSLSYMMDANAFTVFAFGGGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKF 448
+T Y ++ S +AN+ T+ AF G + LL L G+LTY PRA+ Q L + F Y
Sbjct: 342 DTPYE---DAYSNFYNANSITINAFIGKSVKNLLVQLYGKLTYSPRADSQSLGVTFKYNL 398
Query: 449 TKNFSADIKFEYYNVLMHQGYKMGWNGPKLDSQPA-TDQDRSHIFTEIVWK 498
K+ + F Y + MH+GYK+G+ + A T Q+RS++ + + ++
Sbjct: 399 KKHIYLMLMFNGYQITMHKGYKVGFFTSGYNPDFAQTIQNRSYLMSSMSYR 449
>ref|NP_207284.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64580 hypothetical protein HP0487 - Helicobacter pylori (strain 26695)
gb|AAD07555.1| (AE000563) H. pylori predicted coding region HP0487 [Helicobacter
pylori 26695]
Length = 480
Score = 172 bits (436), Expect = 8e-42
Identities = 142/516 (27%), Positives = 223/516 (42%), Gaps = 107/516 (20%)
Query: 15 LFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFT 74
LFL Q+ F++ + K+ S++K GFNN+ +K +YPT ++ +++ + +
Sbjct: 34 LFLSKLQAYKFNMSIVGKVS----SYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG 89
Query: 75 ELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA--------WNYVGY 126
L K A +G A+ YDST N + G+ W Y+G+
Sbjct: 90 --LYKGLRAE-------VGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGW 140
Query: 127 WGGLVG---QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRN 183
+ G G QKP R
Sbjct: 141 YAGHSGLQVQKP----------------------------------------------RL 154
Query: 184 YVIYNAYLRYNYKD---IFEIRGGRYESPA-DYMSGYNQGLDMTLNLGNFKFWWFSSFGR 239
+++NA+L YNYK F ++GGRY++ D+ + Y QG++ + + +F S R
Sbjct: 155 AMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRFRVMYSDAR 214
Query: 240 GFAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYK--GWSIQPFVYFSPFNEYDPN 297
A ++W + F G+ G A Y+ I P+ Y Y P
Sbjct: 215 ASASSDWFWYF----------GRYYTSGKALMVADLKYEKDNLKINPYFYAIFQRMYAPG 264
Query: 298 FTITYDSNPTFTGLGFRSQTDVTVLNPFYAK--RFWDTYQFG-MPAGKNAHSLMIKQKFE 354
ITYD+NP F GFR P +A D F +P GK+ + + +F
Sbjct: 265 INITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFY 324
Query: 355 WNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFG 414
+N++ FG +YK+ GNAN IG +G+ LG++ WTN++Y +N++ + A+ F +
Sbjct: 325 YNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNI---VGADVINGFLYV 381
Query: 415 GGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKFTK-NFSADIKFEYYNVLMHQGYKMGW 473
G +R W +LGR T PRA+E+ L+L Y K N D+K EYY + +GY +G+
Sbjct: 382 GSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGY 441
Query: 474 ---------NGPKLDSQPATD---QDRSHIFTEIVW 497
NGP +QP T DRSHI I +
Sbjct: 442 CGMYVPVDPNGP--GTQPLTHNVYSDRSHIMFNIAY 475
>ref|NP_223157.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||G71931 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06017.1| (AE001478) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 465
Score = 170 bits (430), Expect = 4e-41
Identities = 141/516 (27%), Positives = 222/516 (42%), Gaps = 107/516 (20%)
Query: 15 LFLLSSQSQAFDLGKIAKIKAGAESFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFT 74
LFL Q+ F++ + K+ S++K GFNN+ +K +YPT ++ +++ + +
Sbjct: 19 LFLSKLQAYKFNMSIVGKVS----SYTKFGFNNQRYQPSKDIYPTGSYTSLLGELNLSMG 74
Query: 75 ELLPKSATANGHHLDGSLGGWGGAVIYDSTKDFINEVTGKTYGAMA--------WNYVGY 126
L K A +G A+ YDST N + G+ W Y+G+
Sbjct: 75 --LYKGLRAE-------VGAMMAALPYDSTAYQGNNIPNGQPGSRTDPFGAGIFWQYIGW 125
Query: 127 WGGLVG---QKPWASCGLATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRN 183
+ G G QKP R
Sbjct: 126 YAGHSGLNVQKP----------------------------------------------RL 139
Query: 184 YVIYNAYLRYNYKD---IFEIRGGRYESPA-DYMSGYNQGLDMTLNLGNFKFWWFSSFGR 239
+++NA+L YNYK F ++GGRY++ D+ + Y QG++ + + + S R
Sbjct: 140 AMVHNAFLSYNYKKDKFSFGVKGGRYDAEEYDWFTSYTQGVEGFVKYKDTRLRVMYSDAR 199
Query: 240 GFAYNEWLYNFYSPKTYTLKNGQTINPGVHAFYAIWNYK--GWSIQPFVYFSPFNEYDPN 297
A ++W + F G+ G A Y+ I P+ Y Y P
Sbjct: 200 ASASSDWFWYF----------GRYYTSGKALMIADLKYEKDNLKINPYFYAIFQRMYAPG 249
Query: 298 FTITYDSNPTFTGLGFRSQTDVTVLNPFYAK--RFWDTYQFG-MPAGKNAHSLMIKQKFE 354
ITYD+NP F GFR P +A D F +P GK+ + + +F
Sbjct: 250 INITYDTNPNFNNKGFRFVGTFVGFFPIFATPANQNDIILFQQVPLGKSGQTYFFRTRFY 309
Query: 355 WNEYNFGFGIYKSFGNANWMIGYHGNRLGFDFWTNTVYANTLNSLSYMMDANAFTVFAFG 414
+N++ FG +YK+ GNAN IG +G+ LG++ WTN++Y +N++ + A+ F +
Sbjct: 310 YNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNI---VGADVINGFLYV 366
Query: 415 GGVHRKLLWGLLGRLTYGPRANEQVLSLNFGYKFTK-NFSADIKFEYYNVLMHQGYKMGW 473
G +R W +LGR T PRA+E+ L+L Y K N D+K EYY + +GY +G+
Sbjct: 367 GSQYRGFSWKILGRWTDSPRADERSLALFLSYFSNKYNIRMDLKLEYYGNITKKGYCIGY 426
Query: 474 ---------NGPKLDSQPATD---QDRSHIFTEIVW 497
NGP +QP T DRSHI I +
Sbjct: 427 CGMYVPVDPNGP--GTQPLTHNVYSDRSHIMFNITY 460
>ref|NP_223156.1| (NC_000921) Outer membrane protein [Helicobacter pylori J99]
pir||F71931 outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06016.1| (AE001478) Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 154 bits (390), Expect = 2e-36
Identities = 142/523 (27%), Positives = 215/523 (40%), Gaps = 104/523 (19%)
Query: 39 SFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGA 98
+FSKVGFN PIN KG+YPTETF+ + +++ + L + T N +GG G
Sbjct: 40 NFSKVGFNRSPINPVKGIYPTETFVNLTG--KLEGSVHLGRGWTVN-------VGGVLGG 90
Query: 99 VIYDST------KDFI------NEVTGKTYGAMAWNYVGYW-----GGLVGQKPWASCGL 141
+YD+T KDF G ++ N W GG++ +
Sbjct: 91 QVYDNTRYDRWAKDFTPPSYWDKTSCGTDSLSLCMNATKMWQQQGPGGIIDPR------- 143
Query: 142 ATGNLTQGQYDKMTQAEMTQLSNQEALEASTCAKGYAAHTRNYVIYNAYLRYNYKDIFEI 201
G + G+++ + A+ G H+R Y +Y A L Y+ + +
Sbjct: 144 GIGYMYMGEWNGLFP---------NYYPANAYLPG---HSRRYEVYKANLTYDSDRVHMV 191
Query: 202 RGG---RYESPADYMSGYNQGLDMTLNLG-NFKFWWFSSFGRGFAYNEWLYNFYSPKTYT 257
G + D++ QG T L N KF FSS+GRG A +WL+ Y K +
Sbjct: 192 MGRFDVTEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSSWGRGIADGQWLFPIYREKPW- 250
Query: 258 LKNGQTINPGVHAFYAIWN-YKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQ 316
G+H I+ K I P+VY P P I YD+NP F+G G R++
Sbjct: 251 ---------GIHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNK 301
Query: 317 TDVTVLNPF---------YAKRFWDTYQFGMPAGK-------NAHSLMIKQKFEWNEYNF 360
T VL + YA ++T+ + GK +L + + N Y
Sbjct: 302 TTFYVLYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLYLHHHIDINNYFV 361
Query: 361 GFGIYKSFGNANWMIGYHGNRL---GFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGV 417
G Y + GN N +G GN + G + W +Y+ + + DA+AFT + GGG
Sbjct: 362 VGGAYLNIGNPNMNLGTWGNPVALDGIEQWVGGIYSLGFAGIDNITDADAFTEYVKGGGK 421
Query: 418 HRKLLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYK-----MG 472
H K W + R T PRA E + + Y+F+K+ A +K + + GY +G
Sbjct: 422 HGKFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFLG 481
Query: 473 WNGPKLDSQ--------------------PATDQDRSHIFTEI 495
NG L+ + QDRSH+ T I
Sbjct: 482 PNGQPLNLNNGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHI 524
>ref|NP_207283.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64580 hypothetical protein HP0486 - Helicobacter pylori (strain 26695)
gb|AAD07554.1| (AE000563) H. pylori predicted coding region HP0486 [Helicobacter
pylori 26695]
Length = 528
Score = 153 bits (386), Expect = 5e-36
Identities = 141/521 (27%), Positives = 213/521 (40%), Gaps = 100/521 (19%)
Query: 39 SFSKVGFNNKPINTNKGLYPTETFMTIMAYMQVDFTELLPKSATANGHHLDGSLGGWGGA 98
+F+KVGFN+ PIN KG+YPTETF+ + +++ + L + T N LGG G
Sbjct: 40 NFAKVGFNHSPINPVKGIYPTETFVNLTG--KLEGSVHLGRGWTVN-------LGGVLGG 90
Query: 99 VIYDSTKDFINEVTGKTYGAMAWNYV--GYWGGLVGQKPWASCGLATGNLTQGQYDKMTQ 156
YD TK Y A ++ YW SCG + +L Q
Sbjct: 91 QAYDGTK----------YDRWAKDFTPPSYWDK-------TSCGTDSMSLCMNATKMWQQ 133
Query: 157 AEMTQLSNQEALEASTCAKG-------YAAH------TRNYVIYNAYLRYNYKDIFEIRG 203
+ + N + + Y A+ +R Y +Y A L Y+ + + G
Sbjct: 134 SGPGGVINPRGIGWEYMGEWNGLFPNYYPANAYLPGGSRRYQVYKANLTYDSDRVHMVMG 193
Query: 204 G---RYESPADYMSGYNQGLDMTLNLG-NFKFWWFSSFGRGFAYNEWLYNFYSPKTYTLK 259
+ D++ QG T L N KF FS +GRG A +WL+ Y K +
Sbjct: 194 RFDITEQEQMDWIYQLFQGFYGTFKLTKNMKFLLFSGWGRGIADGQWLFPIYREKPW--- 250
Query: 260 NGQTINPGVHAFYAIWN-YKGWSIQPFVYFSPFNEYDPNFTITYDSNPTFTGLGFRSQTD 318
GVH I+ K I P+VY P P I YD+NP F+G G R++T
Sbjct: 251 -------GVHKAGIIYRPTKNLMIHPYVYLIPMVGTLPGAKIEYDTNPEFSGRGIRNRTT 303
Query: 319 VTVLNPF---------YAKRFWDTYQFGMPAGK-------NAHSLMIKQKFEWNEYNFGF 362
L + YA ++T+ + GK +L+++ + N Y
Sbjct: 304 FYALYDYRWNNAEYGRYAPARYNTWDPFLDNGKWRGLQGPGGATLLLRHHIDINNYFVVG 363
Query: 363 GIYKSFGNANWMIGYHGNRL---GFDFWTNTVYANTLNSLSYMMDANAFTVFAFGGGVHR 419
G Y + GN N +G GN + G + W ++Y+ + + DA+AFT + GGG H
Sbjct: 364 GAYLNIGNPNMNLGTWGNPVAVDGIEQWVGSIYSLGFAGIDNITDADAFTEYVKGGGKHG 423
Query: 420 KLLWGLLGRLTYGPRANEQVLSLNFGYKFTKNFSADIKFEYYNVLMHQGYK-----MGWN 474
K W + R T PRA E + + Y+F+K+ A +K + + GY +G N
Sbjct: 424 KFSWSVYQRFTTAPRALEYGIGMYLDYQFSKHVKAGLKLVWLEFQIRAGYNPGTGFLGPN 483
Query: 475 GPKLDSQ--------------------PATDQDRSHIFTEI 495
G L+ + QDRSH+ T I
Sbjct: 484 GQPLNLNTGLFESSAFAQGPQNMGGIAKSITQDRSHLMTHI 524
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,038,811
Number of Sequences: 1026957
Number of extensions: 16477534
Number of successful extensions: 30582
Number of sequences better than 1.0e-02: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30483
Number of HSP's gapped (non-prelim): 29
length of query: 499
length of database: 324,149,939
effective HSP length: 125
effective length of query: 374
effective length of database: 195,780,314
effective search space: 73221837436
effective search space used: 73221837436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)