BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645422|ref|NP_207596.1| hypothetical protein [Helicobacter pylori 26695] (279 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207596.1|  (NC_000915) hypothetical protein [Helicoba...   570  e-162
ref|NP_223457.1|  (NC_000921) putative [Helicobacter pylori ...   561  e-159
emb|CAB71023.1|  (AJ271607) hypothetical protein [Helicobact...   484  e-136
ref|NP_230895.1|  (NC_002505) conserved hypothetical protein...   142  3e-33
emb|CAA72786.1|  (Y12062) hypothetical protein [Helicobacter...    54  2e-06

>ref|NP_207596.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64620 hypothetical protein HP0803 - Helicobacter pylori (strain 26695)
 gb|AAD07858.1| (AE000592) H. pylori predicted coding region HP0803 [Helicobacter
           pylori 26695]
          Length = 279

 Score =  570 bits (1468), Expect = e-162
 Identities = 279/279 (100%), Positives = 279/279 (100%)

Query: 1   MRVIIEFMLISLKTFLKILLKIFLKTFQKIWVVCVIIWGLGCSFLNANSIQLEETLRRSP 60
           MRVIIEFMLISLKTFLKILLKIFLKTFQKIWVVCVIIWGLGCSFLNANSIQLEETLRRSP
Sbjct: 1   MRVIIEFMLISLKTFLKILLKIFLKTFQKIWVVCVIIWGLGCSFLNANSIQLEETLRRSP 60

Query: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE 120
           KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE
Sbjct: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE 120

Query: 121 KFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMASAFFSFITSTL 180
           KFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMASAFFSFITSTL
Sbjct: 121 KFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMASAFFSFITSTL 180

Query: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALM 240
           FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALM
Sbjct: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALM 240

Query: 241 DPIGFIIRDLGLGEALGIYNKHEIRSSLSPNGLNLTYKF 279
           DPIGFIIRDLGLGEALGIYNKHEIRSSLSPNGLNLTYKF
Sbjct: 241 DPIGFIIRDLGLGEALGIYNKHEIRSSLSPNGLNLTYKF 279

>ref|NP_223457.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71894 hypothetical protein jhp0739 - Helicobacter pylori (strain J99)
 gb|AAD06325.1| (AE001505) putative [Helicobacter pylori J99]
          Length = 279

 Score =  561 bits (1446), Expect = e-159
 Identities = 270/279 (96%), Positives = 277/279 (98%)

Query: 1   MRVIIEFMLISLKTFLKILLKIFLKTFQKIWVVCVIIWGLGCSFLNANSIQLEETLRRSP 60
           MRVII+FMLISLKTFLKILLKIFLKTFQKIW+VCV+IWGLGCSFLNANS+QLEETLRR+P
Sbjct: 1   MRVIIKFMLISLKTFLKILLKIFLKTFQKIWIVCVVIWGLGCSFLNANSVQLEETLRRNP 60

Query: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE 120
           KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE
Sbjct: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE 120

Query: 121 KFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMASAFFSFITSTL 180
           KFG+KSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWM SAFFSFITSTL
Sbjct: 121 KFGVKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMTSAFFSFITSTL 180

Query: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALM 240
           FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRL IALM
Sbjct: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLAIALM 240

Query: 241 DPIGFIIRDLGLGEALGIYNKHEIRSSLSPNGLNLTYKF 279
           DPIGFIIRDLGLGEALGIYNKHEIRS+LSPNGLNLTYKF
Sbjct: 241 DPIGFIIRDLGLGEALGIYNKHEIRSNLSPNGLNLTYKF 279

>emb|CAB71023.1| (AJ271607) hypothetical protein [Helicobacter pylori]
          Length = 240

 Score =  484 bits (1245), Expect = e-136
 Identities = 232/240 (96%), Positives = 238/240 (98%)

Query: 1   MRVIIEFMLISLKTFLKILLKIFLKTFQKIWVVCVIIWGLGCSFLNANSIQLEETLRRSP 60
           MRVIIEFMLISLKTFLKILLKIFLKTFQKIW+VCV+IWGLGCSFLNANSIQLEETLRR+P
Sbjct: 1   MRVIIEFMLISLKTFLKILLKIFLKTFQKIWIVCVVIWGLGCSFLNANSIQLEETLRRNP 60

Query: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDKE 120
           KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWD+E
Sbjct: 61  KNLIWQHFKKKFKKSNTIPYAPNSRWKYLGTSIGILGVSLVIGIVGLYLMPESVTNWDRE 120

Query: 121 KFGIKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFSWMASAFFSFITSTL 180
           KFG+KSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGF WMASAFFSFITSTL
Sbjct: 121 KFGVKSWFENVRMGPKLDNDSFIFNEILHPYFGAMYYMQPRMAGFGWMASAFFSFITSTL 180

Query: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNEGKLFGSLFLGRLVIALM 240
           FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRN+GKLFGSLFLGRL IALM
Sbjct: 181 FWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTRYIQRNQGKLFGSLFLGRLAIALM 240

>ref|NP_230895.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
 pir||G82222 conserved hypothetical protein VC1250 [imported] - Vibrio cholerae
           (group O1 strain N16961)
 gb|AAF94409.1| (AE004204) conserved hypothetical protein [Vibrio cholerae]
          Length = 299

 Score =  142 bits (359), Expect = 3e-33
 Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 24/209 (11%)

Query: 43  SFLNANSIQLEETLRRSPKNLIWQHFKKKFKKSNTIPYAPNSRWKYL-GTSIGILGVSLV 101
           S  +A+S++L+E L   PK L+ Q  +                W YL G +  ILG+S++
Sbjct: 59  SLNDASSLKLDEHL---PKYLMVQDTRD---------------WDYLKGQTYTILGLSVM 100

Query: 102 IGIVGLYLMPESVTNWDKEKFGI----KSWFENVRMGPKLDNDSFIFNEILHPYFGAMYY 157
              + + L+PES+T WD E   +    K W +NV  GP  D D    N I+HPYFG +YY
Sbjct: 101 TAGL-MTLLPESITKWDAEDRKLSGLGKKWKDNVTSGPTWDRDEHFLNYIMHPYFGGVYY 159

Query: 158 MQPRMAGFSWMASAFFSFITSTLFWEYGLEAFVEVPSWQDLVITPLLGSILGEGFYQLTR 217
              R AGF+   S  +S   ST FWEYG+EAF EVPSWQD+ ITP  G+++GE  ++  +
Sbjct: 160 TAARHAGFNEFESFLYSATMSTFFWEYGVEAFAEVPSWQDIFITPFFGAVIGELMFEAEQ 219

Query: 218 YIQRNEGKLFGSLFLGRLVIALMDPIGFI 246
            I  N G++ GS  +G + +  ++PIG I
Sbjct: 220 NIVANGGEVMGSDTMGGVTLFFLNPIGHI 248

>emb|CAA72786.1| (Y12062) hypothetical protein [Helicobacter pylori]
          Length = 25

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 255 ALGIYNKHEIRSSLSPNGLNLTYKF 279
           ALGIYNKHEIRS+LSPNGLNLTYKF
Sbjct: 1   ALGIYNKHEIRSNLSPNGLNLTYKF 25

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.327    0.144    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,065,185
Number of Sequences: 1026957
Number of extensions: 7985639
Number of successful extensions: 22448
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22442
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 324,149,939
effective HSP length: 119
effective length of query: 160
effective length of database: 201,942,056
effective search space: 32310728960
effective search space used: 32310728960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 96 (41.6 bits)