BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645425|ref|NP_207599.1| hypothetical protein
[Helicobacter pylori 26695]
(206 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207599.1| (NC_000915) hypothetical protein [Helicoba... 412 e-115
gb|AAM46140.1|AF380136_1 (AF380136) metalloprotease [Helico... 385 e-106
ref|NP_223460.1| (NC_000921) putative [Helicobacter pylori ... 385 e-106
ref|NP_360041.1| (NC_003103) unknown [Rickettsia conorii] >... 77 1e-13
ref|NP_281803.1| (NC_002163) hypothetical protein Cj0620 [C... 76 2e-13
ref|NP_279256.1| (NC_002607) Vng0110c [Halobacterium sp. NR... 75 6e-13
ref|NP_603843.1| (NC_003454) Zinc metalloprotease [Fusobact... 74 1e-12
ref|NP_561719.1| (NC_003366) hypothetical protein [Clostrid... 73 2e-12
ref|NP_384132.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 71 7e-12
ref|NP_353056.1| (NC_003062) AGR_C_25p [Agrobacterium tumef... 69 3e-11
ref|NP_634625.1| (NC_003901) Zinc metalloprotease [Methanos... 66 2e-10
ref|NP_618386.1| (NC_003552) conserved hypothetical protein... 65 4e-10
ref|NP_654268.1| (NC_003995) DUF45, Protein of unknown func... 63 2e-09
ref|NP_070535.1| (NC_000917) hypothetical protein [Archaeog... 62 3e-09
ref|NP_540932.1| (NC_003317) zinc metallopeptidases [Brucel... 62 4e-09
ref|NP_326157.1| (NC_002771) conserved hypothetical protein... 62 5e-09
ref|NP_617886.1| (NC_003552) conserved hypothetical protein... 60 2e-08
ref|NP_224143.1| (NC_000921) putative [Helicobacter pylori ... 59 3e-08
ref|NP_518642.1| (NC_003295) HYPOTHETICAL PROTEIN [Ralstoni... 59 3e-08
ref|NP_142658.1| (NC_000961) hypothetical protein [Pyrococc... 57 1e-07
ref|NP_346969.1| (NC_003030) Predicted metal-dependent hydr... 56 2e-07
gb|AAM08233.1| (AF410854) unknown [Legionella pneumophila] 56 2e-07
ref|NP_578408.1| (NC_003413) hypothetical protein [Pyrococc... 55 4e-07
ref|NP_208192.1| (NC_000915) conserved hypothetical protein... 55 5e-07
ref|NP_638254.1| (NC_003902) conserved hypothetical protein... 55 5e-07
ref|NP_105795.1| (NC_002678) hypothetical protein [Mesorhiz... 54 1e-06
ref|NP_276076.1| (NC_000916) unknown [Methanothermobacter t... 53 2e-06
ref|NP_541426.1| (NC_003318) zinc metallopeptidases [Brucel... 53 2e-06
ref|NP_661599.1| (NC_002932) zinc protease, putative [Chlor... 52 4e-06
ref|NP_297857.1| (NC_002488) conserved hypothetical protein... 52 5e-06
ref|NP_127009.1| (NC_000868) hypothetical protein [Pyrococc... 51 9e-06
ref|NP_634315.1| (NC_003901) Zinc metalloprotease [Methanos... 48 6e-05
ref|NP_078157.1| (NC_002162) conserved hypothetical [Ureapl... 48 6e-05
ref|NP_283232.1| (NC_003116) hypothetical protein NMA0403 [... 47 1e-04
ref|NP_275026.1| (NC_003112) conserved hypothetical protein... 47 1e-04
ref|NP_419070.1| (NC_002696) conserved hypothetical protein... 46 2e-04
ref|NP_273283.1| (NC_003112) conserved hypothetical protein... 46 3e-04
ref|NP_639436.1| (NC_003902) conserved hypothetical protein... 46 3e-04
ref|NP_644521.1| (NC_003919) conserved hypothetical protein... 46 3e-04
gb|AAD38302.1|AF036242_2 (AF036242) unknown [Neisseria meni... 44 9e-04
ref|NP_282887.1| (NC_003116) hypothetical protein NMA0032 [... 44 0.001
gb|AAD24686.1|AF083877_6 (AF083877) unknown [Erwinia amylov... 44 0.001
ref|NP_297587.1| (NC_002488) hypothetical protein [Xylella ... 41 0.007
>ref|NP_207599.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64620 hypothetical protein HP0806 - Helicobacter pylori (strain 26695)
gb|AAD07859.1| (AE000592) H. pylori predicted coding region HP0806 [Helicobacter
pylori 26695]
Length = 206
Score = 412 bits (1060), Expect = e-115
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MLDDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ 60
MLDDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ
Sbjct: 1 MLDDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ 60
Query: 61 EKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF 120
EKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF
Sbjct: 61 EKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF 120
Query: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC
Sbjct: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
Query: 181 PNYRALRERLKQNTIFYAQLLKTLQP 206
PNYRALRERLKQNTIFYAQLLKTLQP
Sbjct: 181 PNYRALRERLKQNTIFYAQLLKTLQP 206
>gb|AAM46140.1|AF380136_1 (AF380136) metalloprotease [Helicobacter pylori]
Length = 206
Score = 385 bits (988), Expect = e-106
Identities = 192/206 (93%), Positives = 197/206 (95%)
Query: 1 MLDDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ 60
MLDDIPITIQKS+KIKTLSLNITPSL VILKMPNSCSQTRASAFLKEQEAWLKKT +MQ
Sbjct: 1 MLDDIPITIQKSEKIKTLSLNITPSLVVILKMPNSCSQTRASAFLKEQEAWLKKTLSAMQ 60
Query: 61 EKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF 120
EK+SLL + LE YQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPL AQKMQTSYTHF
Sbjct: 61 EKYSLLHSRLETYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLNAQKMQTSYTHF 120
Query: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
S+RNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC
Sbjct: 121 SVRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
Query: 181 PNYRALRERLKQNTIFYAQLLKTLQP 206
PNYRALRE LKQN IFYAQLLKTLQP
Sbjct: 181 PNYRALREHLKQNIIFYAQLLKTLQP 206
>ref|NP_223460.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71894 hypothetical protein jhp0742 - Helicobacter pylori (strain J99)
gb|AAD06314.1| (AE001505) putative [Helicobacter pylori J99]
Length = 206
Score = 385 bits (988), Expect = e-106
Identities = 188/206 (91%), Positives = 199/206 (96%)
Query: 1 MLDDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ 60
MLD+IPITIQKSKKIKTLSLN+TPSLEVILKMP+SC Q RA+AFLKEQEAWLKKT L+MQ
Sbjct: 1 MLDNIPITIQKSKKIKTLSLNVTPSLEVILKMPDSCPQARANAFLKEQEAWLKKTLLAMQ 60
Query: 61 EKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF 120
EKHSLLRTNLEKY+NKILVFDE++NANDYTLT+LKKILKTYLEQKLPLIAQKMQTSYTHF
Sbjct: 61 EKHSLLRTNLEKYKNKILVFDEMRNANDYTLTDLKKILKTYLEQKLPLIAQKMQTSYTHF 120
Query: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
SIRNNAKVLGSCSYHNRLSFALLLVCA+KEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC
Sbjct: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAKKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
Query: 181 PNYRALRERLKQNTIFYAQLLKTLQP 206
PNYRALRERLKQ +FY QLLK LQP
Sbjct: 181 PNYRALRERLKQRVVFYTQLLKPLQP 206
>ref|NP_360041.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02942.1| (AE008604) unknown [Rickettsia conorii]
Length = 230
Score = 77.0 bits (188), Expect = 1e-13
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 31/212 (14%)
Query: 7 ITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSM------- 59
+ +++S K K +++ IT S L +P + FL QE W+++
Sbjct: 16 VIVRRSSKAKNIAIRIT-SKGAELVLPLKVKAEKGHNFLLSQEYWVRQKLRRNVTAIPKD 74
Query: 60 QEKHSLLRTNLEKYQNKILVFDEVKNA---NDYTLTE------LKKI-LKTYLEQKLPL- 108
++K S+L + E I+ D KN ND TL LKK+ ++ +L++KL
Sbjct: 75 EDKISILGKSYE-----IIHIDSSKNQIKLNDSTLEVYCCSQVLKKLSIEVFLKKKLLAE 129
Query: 109 -------IAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELA 161
I++K +Y++ I N GSC L F +V A E + Y++ HE+A
Sbjct: 130 IKIIVENISKKHNLTYSNIRIMENVSRWGSCCSKGNLVFNWRVVLAPFEVLKYLVAHEMA 189
Query: 162 HTIHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
H NHSKNFW V+ P Y+ + LK+N
Sbjct: 190 HLKEMNHSKNFWELVEDIYPEYQPAKLWLKRN 221
>ref|NP_281803.1| (NC_002163) hypothetical protein Cj0620 [Campylobacter jejuni]
pir||C81410 hypothetical protein Cj0620 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75256.1| (AL139075) hypothetical protein Cj0620 [Campylobacter jejuni]
Length = 215
Score = 76.3 bits (186), Expect = 2e-13
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 13 KKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWL---KKTFLSMQEKHSLLRTN 69
K IKTL L + E +L +P C+ FL + +W+ KK F K L
Sbjct: 23 KCIKTLRLRLNEKGEFVLSIPYFCTFKSVYEFLDKSSSWMNEAKKRFEKKVLKDDELIFL 82
Query: 70 LEKYQNKILVFDEVKNAN----DYTLTELKKILKTYLEQKLPLI--------AQKMQTSY 117
+KY+ ++FDE D + + K L +L Q I +QK Y
Sbjct: 83 AKKYK---IIFDENTKKTYFDKDKIICQNKAKLDLFLRQNAKKIFTFYLKKWSQKTGLFY 139
Query: 118 THFSIRNNAKVLGSCSYHNRLSFALLLVCAQKE--AIDYVIIHELAHTIHKNHSKNFWRC 175
TH SI+N GSC+ HN+ L L QK AI+YVI+HE++H NHSK F+
Sbjct: 140 THLSIKNMKTRWGSCN-HNKAYVNLNLKLIQKSLRAIEYVILHEISHLKFPNHSKEFYTF 198
Query: 176 VQIFCPNYR 184
++ F ++R
Sbjct: 199 IEHFMSDFR 207
>ref|NP_279256.1| (NC_002607) Vng0110c [Halobacterium sp. NRC-1]
gb|AAG18736.1| (AE004978) Vng0110c [Halobacterium sp. NRC-1]
Length = 241
Score = 74.7 bits (182), Expect = 6e-13
Identities = 39/112 (34%), Positives = 58/112 (50%), Gaps = 8/112 (7%)
Query: 92 TELKKILKTY--------LEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALL 143
+ LK++L+ + L + +A M +Y +RN GSCS + LSF
Sbjct: 121 SSLKRVLENFYRSRAREHLTDRTDALADSMNHTYDRIELRNQRTRWGSCSTNGVLSFNWR 180
Query: 144 LVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQNTI 195
LV A + IDYV++HELAH H+ FWR V++ P YR L + L N++
Sbjct: 181 LVMAPPDVIDYVVVHELAHLRESGHNDRFWRLVEMEIPEYRELSDWLDTNSV 232
>ref|NP_603843.1| (NC_003454) Zinc metalloprotease [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95142.1| (AE010602) Zinc metalloprotease [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 229
Score = 73.9 bits (180), Expect = 1e-12
Identities = 58/216 (26%), Positives = 98/216 (44%), Gaps = 28/216 (12%)
Query: 3 DDIPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQ-- 60
D + T+ K KKIK + I P L + + +P S F++ ++ W++ T ++
Sbjct: 12 DKVEYTVTK-KKIKNFIIRIYPDLRIAVSVPLLASNKDIENFVQNKKEWIETTLEKIKIV 70
Query: 61 -EKHSLLRTNLEKYQNKILVFDEVKN---------------ANDYTLTELKKILKTYLEQ 104
E + L+ N+ K K + +K+ + D ++K L + +
Sbjct: 71 KENKNNLKENVIKILGKEIEKKVIKSDLERIRLTDTSIYIYSKDTGNAGIEKKLLEWKIE 130
Query: 105 KLPLIAQKMQTSYTHFSIRN----NAKVLGSC--SYH---NRLSFALLLVCAQKEAIDYV 155
KL I + +YT RN K L S YH N +SF L+ E I+YV
Sbjct: 131 KLKAILDEYLANYTKLLNRNINYYQIKKLSSAWGIYHKKENYISFNFDLIEKDIECIEYV 190
Query: 156 IIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
++HEL H + NH K+FW V+ + +Y+ R++LK
Sbjct: 191 VLHELCHIFYMNHQKDFWSLVEKYMSDYKIRRKKLK 226
>ref|NP_561719.1| (NC_003366) hypothetical protein [Clostridium perfringens]
dbj|BAB80509.1| (AP003188) hypothetical protein [Clostridium perfringens]
Length = 125
Score = 72.8 bits (177), Expect = 2e-12
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 88 DYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF--------SIRNNAKVLGSCSYHNRLS 139
+Y L+K ++ + ++ I + Y F ++ + GSC+Y+N L
Sbjct: 6 EYNKERLRKAIELWYREEGVRIIKDRVEHYLKFYPVKPRSIKVKEQKRRWGSCTYYNDLL 65
Query: 140 FALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQNTI 195
F + A + +DY+++HE+ H +HK+HSKN+W V PNY+ + LK+N I
Sbjct: 66 FNWRCIMAPLKVVDYIVVHEMTHMVHKDHSKNYWNFVSKIIPNYKEQKMWLKENGI 121
>ref|NP_384132.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41413.1| (AL591782) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 251
Score = 71.2 bits (173), Expect = 7e-12
Identities = 54/214 (25%), Positives = 90/214 (41%), Gaps = 25/214 (11%)
Query: 5 IPITIQKSKKIKTLSLNITPSLEVI-LKMPNSCSQTRASAFLKEQEAWLKK--------- 54
+P+TI+++ + ++L I P + L +P + SAFL + WL
Sbjct: 28 LPLTIRQNARATRMTLRIEPGGRALKLTVPEGLPEREVSAFLIRHQGWLMTKLARFSGES 87
Query: 55 ------TFLSMQEKHSLLRTNLEKYQNKILVFDE-----VKNANDYTLTE----LKKILK 99
T L H + RT + + LV D+ V A ++ LKK +
Sbjct: 88 ELEDGGTILVRGVAHRIERTGRLRGLTEALVIDDEAVLRVGGAEEHLRRRIADYLKKEAR 147
Query: 100 TYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHE 159
+ LE+ + + A + S+++ GSCS LSF+ + A + I Y+ HE
Sbjct: 148 SELERLVAVYAGRTGRRARSLSLKDTRSRWGSCSAEGDLSFSWRIAMAPPKVIAYLAAHE 207
Query: 160 LAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
+AH NH FW + CP + + LK+N
Sbjct: 208 VAHLQEMNHGPRFWALCESLCPETKDAKHWLKRN 241
>ref|NP_353056.1| (NC_003062) AGR_C_25p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_530731.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK85841.1| (AE007944) AGR_C_25p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL41047.1| (AE008976) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 255
Score = 68.9 bits (167), Expect = 3e-11
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 5 IPITIQKSKKIKTLSLNITPSLEVI-LKMPNSCSQTRASAFLKEQEAWLKKTFLSMQEKH 63
+PIT++++ + ++L I P + L +P + FL+ + WL+ L
Sbjct: 31 VPITVRENPRATRITLRIEPGGRALKLTIPMGLHHRQVDDFLERHQGWLEGKLLKFSPDD 90
Query: 64 SL--------------------LR--TNLEKYQNKILVFDEVKNANDYT----LTELKKI 97
L LR T++ K + + V +V A ++ T LKK
Sbjct: 91 GLRPGATIDIRGISHRIEHTGSLRGLTHIAKDADGVAVL-KVSGAPEHLRRRIATFLKKE 149
Query: 98 LKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVII 157
K LE+ + + + S+++ GSCS+ LSF+ +V A IDY+
Sbjct: 150 AKADLERLVAIHGRAAGRPVRSISMKDTRSRWGSCSHDGNLSFSWRIVMAPDRVIDYLAA 209
Query: 158 HELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
HE+AH NH FW + CP+ ++ LK++
Sbjct: 210 HEVAHLSEMNHGPKFWALCEKLCPHTSEAKDWLKRH 245
>ref|NP_634625.1| (NC_003901) Zinc metalloprotease [Methanosarcina mazei Goe1]
gb|AAM32297.1| (AE013504) Zinc metalloprotease [Methanosarcina mazei Goe1]
Length = 245
Score = 66.2 bits (160), Expect = 2e-10
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 43/222 (19%)
Query: 12 SKKIKTLSLNITPSLEVILKMPNSCSQT-------RASAFLKEQEAWLKKTFLSMQEKHS 64
SKK + ++ + P L V + P+ S+ + +A+++E+ W + L QEK
Sbjct: 21 SKKRRKAAIVVRPDLSVEFRAPHGLSREAIREMVQKKAAWVQEKLDWFEVNRLPCQEKEY 80
Query: 65 LLRTNLEK-------YQNKILVFDEVKNA------NDYTLT-------ELKKIL------ 98
T+ EK Y +L + +K A ++ T+ ELK L
Sbjct: 81 ---TDGEKFLYLGKEYPLTVLPVEGIKKAFASFSGSEITVLLPEPAPEELKPSLVKKAVW 137
Query: 99 -------KTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEA 151
+ +E+ L A+ + F +++ K GSCS N L L+ A E
Sbjct: 138 NFYSECAEKEVEKFLKAYAEILNIDIPAFKVKHQKKRWGSCSADNVLRINFQLMMAPPEQ 197
Query: 152 IDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
++YV++HE+ H KNHS FW V P Y+ R+ LK++
Sbjct: 198 LEYVVVHEICHVKEKNHSVKFWDLVGELMPGYQVHRKSLKKD 239
>ref|NP_618386.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06866.1| (AE011059) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 245
Score = 65.5 bits (158), Expect = 4e-10
Identities = 56/225 (24%), Positives = 97/225 (42%), Gaps = 37/225 (16%)
Query: 5 IPITIQKSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWLKKTF-------L 57
I I SK+ + ++ + P L+V + P+ S L+++ W+++ L
Sbjct: 14 IDYEIVYSKRRRKAAIVVRPDLKVEFRAPHGLSLEAIRDMLQKKAGWVQEKLDWFEANRL 73
Query: 58 SMQEKH----SLLRTNLEKYQNKILVFDEVKNA----NDYTLT---------ELKKIL-- 98
QEK + +Y KIL +K N LT EL+ +L
Sbjct: 74 PGQEKRYTEGEIYLYMGREYPLKILAGKGIKKPLASFNGAELTVLIPEAVPEELRPVLVK 133
Query: 99 -----------KTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCA 147
++ +E+ L + ++K++ + F ++ + GSCS N + L+ A
Sbjct: 134 KAVWDFYRECAESNVERLLKIYSEKLKIAPPIFKVKYQKRRWGSCSADNVIRINFQLMMA 193
Query: 148 QKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
E ++YV++HEL H KNHS FW+ V P Y R+ LK+
Sbjct: 194 PPEQLEYVVVHELCHVKEKNHSFRFWKLVGGLMPGYEIHRKSLKK 238
>ref|NP_654268.1| (NC_003995) DUF45, Protein of unknown function DUF45 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 154
Score = 62.8 bits (151), Expect = 2e-09
Identities = 32/115 (27%), Positives = 60/115 (51%), Gaps = 9/115 (7%)
Query: 83 VKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHFS-------IRNNAKVLGSCSYH 135
VK D + + K + Y +Q L+ + ++ ++F I ++++ G+C +
Sbjct: 33 VKELKDEKIQQALK--RFYYKQCKSLVGKSIKAHQSNFKTKPRSIRITDSSRTWGTCDSN 90
Query: 136 NRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERL 190
+L+F L A + IDYV++HE+ H +H NH ++FWR V P+Y+ + L
Sbjct: 91 LQLTFNWKLAMAPQRVIDYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYKEMENWL 145
>ref|NP_070535.1| (NC_000917) hypothetical protein [Archaeoglobus fulgidus]
pir||B69463 hypothetical protein AF1707 - Archaeoglobus fulgidus
gb|AAB89540.1| (AE000985) A. fulgidus predicted coding region AF1707
[Archaeoglobus fulgidus]
Length = 219
Score = 62.4 bits (150), Expect = 3e-09
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 43 AFLKEQEAWLKKTFLSMQE-------KHSLLRTNLEKYQN------KILVFDEVKNANDY 89
+F+ + W+KK ++ K +L N + Y +I +EV Y
Sbjct: 35 SFISKHADWIKKKRAEIESLAEEIKGKERMLLLNGKFYHLVKDSGFEIKEGEEVGVVKYY 94
Query: 90 TLTELKK----ILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLV 145
+L LK+ IL+ L++ + ++ + +Y I+ SCS LSF L +
Sbjct: 95 SLRNLKRNLASILREELKRNVSFYSRLLGINYGRIFIKMQKTKWASCSSKGNLSFNLASL 154
Query: 146 CAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQNTIF 196
++ +Y+++HEL H + HS+ FW V + P Y LK+ IF
Sbjct: 155 ALPEKLREYIVVHELVHLLEPKHSRLFWETVGFYYPEYEEAERELKKYWIF 205
>ref|NP_540932.1| (NC_003317) zinc metallopeptidases [Brucella melitensis]
gb|AAL53196.1| (AE009634) zinc metallopeptidases [Brucella melitensis]
Length = 253
Score = 62.0 bits (149), Expect = 4e-09
Identities = 44/215 (20%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 4 DIPITIQKSKKIKTLSLNITPSLEVI-LKMPNSCSQTRASAFLKEQEAWLKKTFLSMQEK 62
++P+ + ++ + K L+L I P + + + +P + FL E W++ + ++
Sbjct: 33 ELPLRVYENPRAKRLTLRIEPGGKGLRITVPPGLPEREVQNFLNRHEGWIESRIAKLPDQ 92
Query: 63 -------------------HSLLRTNLEKYQNKILVFDE-----VKNANDYTLTELKKIL 98
H R +E + IL+ + DY E+++ +
Sbjct: 93 PGVRAGIKIPIRGVAHLIVHQPGRGTVECIEGNILLVHGDPSHLPRRVADYLKREVRRDI 152
Query: 99 KTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIH 158
+ + + + +K + ++ GSC+ LSF+ + A I+Y++ H
Sbjct: 153 EALVVRHTAAVGRKAKA----VRFKDTKSRWGSCTSDGVLSFSWRIGMAPPPVINYLVAH 208
Query: 159 ELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
E AH I NH FW+ Q CP+ + LK N
Sbjct: 209 EAAHLIEMNHGPKFWKLCQELCPDTERCKAWLKHN 243
>ref|NP_326157.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13499.1| (AL445564) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 177
Score = 61.6 bits (148), Expect = 5e-09
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 75 NKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSY 134
+K++ E + + Y +K+I YL+ + + M +R + S +Y
Sbjct: 61 SKVIRVKEYEKIDIYLKKIIKEIFLEYLKVRQKYWSLIMGVPEHSIEVREKNRSWAS-NY 119
Query: 135 HNRLSFALLLVCAQK--EAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRE 188
++ L + K E IDY+IIHELAH +NHS NFW+ V ++CPN++A+++
Sbjct: 120 VSKKKIVYALKSSSKSYEWIDYLIIHELAHYKEQNHSSNFWKIVSLYCPNWKAMKK 175
>ref|NP_617886.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM06366.1| (AE011002) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 130
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 130 GSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRER 189
G+CS N+L F ++ A+ IDYV++HEL HT +K+HSK FW VQ P+Y +
Sbjct: 61 GNCSKTNQLRFNWRVIMAKMSIIDYVVVHELCHTKYKDHSKAFWNEVQKILPDYEERKAW 120
Query: 190 LK 191
L+
Sbjct: 121 LR 122
>ref|NP_224143.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71808 hypothetical protein jhp1425 - Helicobacter pylori (strain J99)
gb|AAD07006.1| (AE001565) putative [Helicobacter pylori J99]
Length = 235
Score = 58.9 bits (141), Expect = 3e-08
Identities = 38/150 (25%), Positives = 79/150 (52%), Gaps = 10/150 (6%)
Query: 44 FLKEQEAWLKKTFLSMQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLE 103
+L + E +KK F+ K +L + K + + +K +Y L++ ++TY+
Sbjct: 89 YLLKIEHTIKKHFVLQSPKCLILHVH-----QKTSLENRLKVLENYYRQVLREKIQTYIN 143
Query: 104 QKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNR-LSFALLLVCAQKEAIDYVIIHELAH 162
Q ++ + +Q+ F I+ ++ GSC+ R L F L L A ++ I+YV++HEL H
Sbjct: 144 QYEKILNESIQS----FKIQKMKRIWGSCNIAKRTLLFNLELAKAPRKGIEYVVVHELLH 199
Query: 163 TIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
++H++ F + ++ P+++ + LK+
Sbjct: 200 LKARHHNEYFRDLLSLYLPDWQRAKASLKE 229
>ref|NP_518642.1| (NC_003295) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14049.1| (AL646059) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 288
Score = 58.9 bits (141), Expect = 3e-08
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 104 QKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHT 163
++L + A+++ ++ +++ + A GSC+ ++ LV IDYV+ HELAH
Sbjct: 191 ERLDVYAERLGVRHSAYALSSAATRWGSCTADGKIRLNWRLVHFPLSLIDYVVAHELAHL 250
Query: 164 IHKNHSKNFWRCVQIFCPNYRALRERLKQN 193
NHS FW V+ P +R RE+L+ +
Sbjct: 251 KEMNHSPRFWDTVESIFPEFREAREQLRSH 280
>ref|NP_142658.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||A71118 hypothetical protein PH0712 - Pyrococcus horikoshii
dbj|BAA29803.1| (AP000003) 230aa long hypothetical protein [Pyrococcus horikoshii]
Length = 230
Score = 57.4 bits (137), Expect = 1e-07
Identities = 32/119 (26%), Positives = 58/119 (47%), Gaps = 8/119 (6%)
Query: 74 QNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCS 133
+N+I+++ + D+ E+K+ + I+++ + +R GS +
Sbjct: 93 KNRIIIYPGIDVLRDWIKKEVKR--------RAQEISKEFGVAPKRIYVRVMKTKWGSTT 144
Query: 134 YHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
+ ++ L V +E Y++IHELAH I NHSK FW V + P+Y+ R LK+
Sbjct: 145 WRKSVTLNLSSVALPEELFHYLVIHELAHLIELNHSKRFWSIVARYHPDYKEKRRELKK 203
>ref|NP_346969.1| (NC_003030) Predicted metal-dependent hydrolase [Clostridium
acetobutylicum]
gb|AAK78309.1|AE007547_6 (AE007547) Predicted metal-dependent hydrolase [Clostridium
acetobutylicum]
Length = 259
Score = 56.2 bits (134), Expect = 2e-07
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 56 FLSMQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQT 115
++ ++ + + EK+ KI + +Y E KI ++K L +KM++
Sbjct: 135 YIKEKDNYEYKKNYAEKWYKKIAAIEL-----EYLYNEKYKIFDEIYDEKPKLCIRKMKS 189
Query: 116 SYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRC 175
+ +S +N VL + LV K I+YVIIHEL H +NH K F+
Sbjct: 190 KWGSYSPADNKVVLNT-----------QLVKIPKTCIEYVIIHELCHVKFRNHRKEFYNY 238
Query: 176 VQIFCPNYRALRERL 190
V F P+++ +E L
Sbjct: 239 VNNFMPDWKLKKESL 253
>gb|AAM08233.1| (AF410854) unknown [Legionella pneumophila]
Length = 243
Score = 56.2 bits (134), Expect = 2e-07
Identities = 48/229 (20%), Positives = 97/229 (41%), Gaps = 33/229 (14%)
Query: 2 LDDIPITIQ-KSKKIKTLSLNITPSLEVILKMPNSCSQTRASAFLKEQEAWL--KKTFLS 58
+D IP ++ K ++ +++ + P +VI+ P S + + ++ W+ K
Sbjct: 12 IDKIPFELRPKRQESHRITIKVKPDCQVIVFAPPSATHDEIIVAVNKRAKWVYNKLHIFR 71
Query: 59 MQEKHSLLRTNLE---------KYQNKILVFDEVKNANDYTLTELKKILKTYLEQKLPLI 109
Q+++ + R + KY K++ + K +L+ I +E + L+
Sbjct: 72 SQQEYIIPRQYISGESHYYLGRKYVLKVIEDSKAKPQVKLVRGQLQIIAARNIEHRRQLL 131
Query: 110 AQ-KMQTSYTHFS--------------------IRNNAKVLGSCSYHNRLSFALLLVCAQ 148
++ Q ++ FS +R GSC+ + +++ L+ A
Sbjct: 132 SEWYKQKAFEVFSKRLDQLLSTAPWIKERPTIHLRAMRSRWGSCAVNGKITLNTHLIKAP 191
Query: 149 KEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQNTIFY 197
IDYVI+HEL H NHS F+R + PN++ +++ L + Y
Sbjct: 192 TACIDYVILHELCHHSEHNHSDKFYRLLNQVSPNWKQVKQYLDKAANLY 240
>ref|NP_578408.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL80803.1| (AE010188) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 223
Score = 55.5 bits (132), Expect = 4e-07
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 94 LKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAID 153
L+ +K +++K IA+ S ++ GS ++ ++ +E
Sbjct: 105 LRNWIKREIKRKAREIAKDFGISPKRIYVKAMRTKWGSATWRKSITLNFSSAALPEELFH 164
Query: 154 YVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
Y++IHELAH I NHSK FW V + P+Y+ R LK+
Sbjct: 165 YLVIHELAHLIELNHSKRFWSLVASYHPDYKKKRRELKK 203
>ref|NP_208192.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||A64695 conserved hypothetical protein HP1401 - Helicobacter pylori
(strain 26695)
gb|AAD08444.1| (AE000640) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 235
Score = 55.1 bits (131), Expect = 5e-07
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 44 FLKEQEAWLKKTFLSMQEKHSLLRTNLEKYQNKILVFDEVKNANDYTLTELKKILKTYLE 103
+L + E KK F+ K+ +L + K + + +K +Y L++ ++T +
Sbjct: 89 YLLKIEHTTKKHFVLQNPKYLILHVH-----QKTSLENRLKVLENYYRQVLREKIQTCIN 143
Query: 104 QKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNR-LSFALLLVCAQKEAIDYVIIHELAH 162
+ ++ + +Q+ F I+ ++ GSC+ R L F L L ++ I+YV++HEL H
Sbjct: 144 RYEKILNESIQS----FKIQKMKRIWGSCNIAKRALLFNLELAKVPRKGIEYVVVHELLH 199
Query: 163 TIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
++H++ F + ++ PN++ + LK+
Sbjct: 200 LKTRHHNEYFRDLLSLYLPNWQRAKASLKE 229
>ref|NP_638254.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42178.1| (AE012404) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 248
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
S+R + GSCS R+S L L+ IDYVI+HEL H NH K F+R +
Sbjct: 169 SLRMMQRQWGSCSPSGRISLNLGLIRVPGACIDYVILHELCHLKIHNHGKAFYRLLDAHM 228
Query: 181 PNYRALRERL 190
P +R +++RL
Sbjct: 229 PGWREIKQRL 238
>ref|NP_105795.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51581.1| (AP003005) hypothetical protein [Mesorhizobium loti]
Length = 252
Score = 53.5 bits (127), Expect = 1e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 130 GSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRER 189
GSC+ LSF+ ++ A + I+Y++ HE+AH NH FW+ + CP+ ++
Sbjct: 179 GSCTSEGNLSFSWRIMMAPQPVINYLVAHEVAHLKEMNHGPKFWKLCEKLCPDTDRCKDW 238
Query: 190 LKQN 193
LK+N
Sbjct: 239 LKRN 242
>ref|NP_276076.1| (NC_000916) unknown [Methanothermobacter thermautotrophicus]
[Methanothermobacter thermautotrophicus str. Delta H]
pir||G69225 hypothetical protein MTH939 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB85437.1| (AE000868) unknown [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 188
Score = 53.1 bits (126), Expect = 2e-06
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 65 LLRTNLEKYQNKILVFDEV-KNANDYTLTELK-KILKTYLEQKLPLIAQKMQTSYTHFSI 122
+L + + Q KI F E+ + A+D L + K L++ + L + + Y
Sbjct: 47 VLSSRSDWIQRKIHEFHEMLERASDMELEYRRDKELRSLVSGFLDHYSDVLGVEYGRVRF 106
Query: 123 RNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPN 182
R GSCS LSF LL ++YV++HELAH NHS FW ++ P+
Sbjct: 107 RRMRSRWGSCSSRGNLSFNTLLSHLPDRMVEYVVLHELAHLREMNHSPRFWGILESEMPD 166
Query: 183 YRALRERLK 191
R L+
Sbjct: 167 CTERRRMLR 175
>ref|NP_541426.1| (NC_003318) zinc metallopeptidases [Brucella melitensis]
gb|AAL53690.1| (AE009681) zinc metallopeptidases [Brucella melitensis]
Length = 246
Score = 52.8 bits (125), Expect = 2e-06
Identities = 24/67 (35%), Positives = 33/67 (48%)
Query: 124 NNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNY 183
+ +K GSC R+ L A +DYVI HE H + NHS+ FWR ++ P+Y
Sbjct: 171 DQSKRWGSCDARGRIRLNWRLAMAPMPLVDYVIAHEACHILEHNHSRRFWRSLEAIMPDY 230
Query: 184 RALRERL 190
RL
Sbjct: 231 EDRLRRL 237
>ref|NP_661599.1| (NC_002932) zinc protease, putative [Chlorobium tepidum TLS]
gb|AAM71941.1| (AE012841) zinc protease, putative [Chlorobium tepidum TLS]
Length = 248
Score = 52.0 bits (123), Expect = 4e-06
Identities = 28/89 (31%), Positives = 42/89 (46%)
Query: 94 LKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAID 153
LK K L +L +A + S++ GSCS ++ L L+ +
Sbjct: 137 LKHRAKLKLGAQLMRLASINGFKVSGVSVKKQKSRWGSCSSRGNINLNLKLIFLPPLLVR 196
Query: 154 YVIIHELAHTIHKNHSKNFWRCVQIFCPN 182
Y++IHEL HT+H NHS +W V F P+
Sbjct: 197 YIMIHELCHTLHMNHSARYWETVARFDPD 225
>ref|NP_297857.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||E82791 conserved hypothetical protein XF0567 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83377.1|AE003903_13 (AE003903) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 254
Score = 51.6 bits (122), Expect = 5e-06
Identities = 29/77 (37%), Positives = 41/77 (52%), Gaps = 1/77 (1%)
Query: 130 GSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRER 189
GS + ++ L LV + A +YV++HEL H I NHS FWR V+ P +R R+
Sbjct: 176 GSLATAGHMALDLALVLGRPSAFEYVVVHELCHLIQANHSPAFWREVECRFPLWREERDY 235
Query: 190 LK-QNTIFYAQLLKTLQ 205
+ I AQL + LQ
Sbjct: 236 FHLKGRILKAQLRRLLQ 252
>ref|NP_127009.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||B75043 hypothetical protein PAB1496 - Pyrococcus abyssi (strain Orsay)
emb|CAB50239.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 208
Score = 50.8 bits (120), Expect = 9e-06
Identities = 24/100 (24%), Positives = 48/100 (48%)
Query: 93 ELKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAI 152
E+K++L+ + + + ++ I+ + GS ++ ++ L ++ +
Sbjct: 89 EIKRMLRKEVLNIAGEVGRALKVRPKRVYIKVMKRKWGSTTWRGSITIDLSAAALPRDLL 148
Query: 153 DYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
Y++ HE+ H I NH K FW V F P+Y+ R LK+
Sbjct: 149 HYLVTHEMCHLIEMNHGKKFWSLVSRFHPDYKEKRRELKR 188
>ref|NP_634315.1| (NC_003901) Zinc metalloprotease [Methanosarcina mazei Goe1]
gb|AAM31987.1| (AE013471) Zinc metalloprotease [Methanosarcina mazei Goe1]
Length = 238
Score = 48.1 bits (113), Expect = 6e-05
Identities = 27/101 (26%), Positives = 51/101 (49%), Gaps = 5/101 (4%)
Query: 93 ELKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNR-LSFALLLVCAQKEA 151
+LKK + + + PL+ K++ F ++ GSC++ R + L +E
Sbjct: 132 QLKKAIPPLIARWEPLLGVKVE----RFFVQRMRTKWGSCNHKARNIRLNTELAKKPEEC 187
Query: 152 IDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
++Y I+HE+AH + H+ +F + F P ++ R+RL Q
Sbjct: 188 LEYTIVHEMAHILEPTHNSHFITLMDQFMPKWQFCRDRLNQ 228
>ref|NP_078157.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||E82906 conserved hypothetical UU323 [imported] - Ureaplasma urealyticum
gb|AAF30732.1|AE002129_8 (AE002129) conserved hypothetical [Ureaplasma urealyticum]
Length = 231
Score = 48.1 bits (113), Expect = 6e-05
Identities = 35/131 (26%), Positives = 58/131 (43%), Gaps = 29/131 (22%)
Query: 68 TNLEKYQNKILVF-------DEVKNANDYTLTELKKILKTYLEQKLPLIAQKMQTSYTHF 120
TN + KIL++ +KNA + T +KK + + + + +
Sbjct: 122 TNTKLLYQKILIYLAEIIFPQIIKNAQNITTLTVKKYVFGFYKSQ--------------W 167
Query: 121 SIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFC 180
+ N K SY LV ++ I+YV+IHELAH +++H K+FW V +C
Sbjct: 168 GVYNKIKHTIGLSY--------FLVHYDQDIINYVVIHELAHIKYQHHQKSFWDFVLKYC 219
Query: 181 PNYRALRERLK 191
N + +LK
Sbjct: 220 KNAKIYNNQLK 230
>ref|NP_283232.1| (NC_003116) hypothetical protein NMA0403 [Neisseria meningitidis
Z2491]
pir||H81956 hypothetical protein NMA0403 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83703.1| (AL162753) hypothetical protein NMA0403 [Neisseria meningitidis
Z2491]
Length = 230
Score = 47.4 bits (111), Expect = 1e-04
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 94 LKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAID 153
L++ +YL +L A+ Q S+ + G C + F LV A + D
Sbjct: 123 LERQAHSYLIPRLERHARTTQLFPAPSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVAD 182
Query: 154 YVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
YV IHEL H H +HS+ FW + F P ++ LK
Sbjct: 183 YVCIHELCHLAHADHSRAFWALTRRFAPYTPEAKQWLK 220
>ref|NP_275026.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||H81013 conserved hypothetical protein NMB2035 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42356.1| (AE002553) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 230
Score = 47.0 bits (110), Expect = 1e-04
Identities = 30/98 (30%), Positives = 43/98 (43%)
Query: 94 LKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAID 153
L++ +YL +L A+ Q S+ + G C + F LV A + D
Sbjct: 123 LERQAHSYLIPRLERHARTTQLFPASSSLTSAKTFWGVCRKTTGIRFNWRLVGAPEYVAD 182
Query: 154 YVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
YV IHEL H H +HS FW + F P ++ LK
Sbjct: 183 YVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLK 220
>ref|NP_419070.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22238.1| (AE005698) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 239
Score = 46.2 bits (108), Expect = 2e-04
Identities = 43/196 (21%), Positives = 79/196 (39%), Gaps = 23/196 (11%)
Query: 6 PITIQKSKKIKTLSLNITPSL-EVILKMPNSCSQTRASAFLKEQEAWLKKTFLSMQEKHS 64
P+ ++ + + +SL + + E++ P A AF +E+ W+ K ++ E+ S
Sbjct: 21 PVRLKVDGRARRISLRVDRARSEIVALSPTPRRLNEAVAFAQEKAGWIAKQLAALPERMS 80
Query: 65 L-----LRTNLEKYQNKI-----------LVFDEVKNANDYTLTELKKILKTYLEQKLPL 108
L LR N + ++ ++ +V + N + K+ T L ++ +
Sbjct: 81 LAPGGVLRLNDKPFRLEVGAGRARIDGDRIVAPDDANWGLKVIRLAKREALTVLTERTAI 140
Query: 109 IAQKMQTSYTHFSIRNNAKVLGSCSYHNR-----LSFALLLVCAQKEAIDYVIIHELAHT 163
A + +I + GSC + ++ L+ A DYV HE AH
Sbjct: 141 HAAALGRPVPSVAIADPKARWGSCRPATSRAPAAIRYSWRLILAPAVVADYVAAHECAHL 200
Query: 164 IHKNHSKNFWR-CVQI 178
I NH FW C Q+
Sbjct: 201 IEANHGPRFWALCEQL 216
>ref|NP_273283.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81223 conserved hypothetical protein NMB0226 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40682.1| (AE002380) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 230
Score = 45.8 bits (107), Expect = 3e-04
Identities = 29/104 (27%), Positives = 42/104 (39%)
Query: 88 DYTLTELKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCA 147
D+ L + + YL +L A + + T + N G C H + L+
Sbjct: 117 DHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGVCRPHTGIRLNWRLIGT 176
Query: 148 QKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
+ DYV IHEL H H +HS FW V P+ + LK
Sbjct: 177 PEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSWLK 220
>ref|NP_639436.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43318.1| (AE012533) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 263
Score = 45.8 bits (107), Expect = 3e-04
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 94 LKKILKTYLEQK--------LPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLV 145
L++ LK + E + LP + + ++ + GS + L+ L LV
Sbjct: 141 LRRTLKEFYEAQARADIGRWLPTYLPGLPRAPARLRLKVMSSQWGSLAPDGSLALDLALV 200
Query: 146 CAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQN-TIFYAQLLKTL 204
+ A +YV++HEL H + NHS FW V+ P +R R ++ AQL + L
Sbjct: 201 LGRPSAFEYVLVHELCHLVQANHSPAFWAEVEQRFPAWRDERSYFHEHGRQLKAQLRRLL 260
Query: 205 Q 205
Q
Sbjct: 261 Q 261
>ref|NP_644521.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM39057.1| (AE012074) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 263
Score = 45.8 bits (107), Expect = 3e-04
Identities = 27/102 (26%), Positives = 47/102 (45%), Gaps = 8/102 (7%)
Query: 94 LKKILKTYLEQK--------LPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLV 145
L++ LK + E + LP + + ++ + GS + ++ L LV
Sbjct: 141 LRRTLKEFYEAQARADVGRWLPTYLPGLPRAPARLRLKMMSSQWGSLAPDGSMALDLALV 200
Query: 146 CAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALR 187
+ A +YV++HEL H + NHS FW V+ P++R R
Sbjct: 201 LGRPSAFEYVLVHELCHLVQANHSPAFWAEVEQRFPSWREER 242
>gb|AAD38302.1|AF036242_2 (AF036242) unknown [Neisseria meningitidis]
Length = 230
Score = 44.3 bits (103), Expect = 9e-04
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 94 LKKILKTYLEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAID 153
L++ +YL +L A+ Q S+ + G C + LV A + D
Sbjct: 123 LERQAHSYLIPRLERHARTTQLFPAPSSLTSAKTFWGVCRKTTGIRLNWRLVGAPEYVAD 182
Query: 154 YVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLK 191
YV IHEL H H +HS FW + F P ++ LK
Sbjct: 183 YVCIHELCHLAHPDHSPAFWELTRRFAPYTPKAKQWLK 220
>ref|NP_282887.1| (NC_003116) hypothetical protein NMA0032 [Neisseria meningitidis
Z2491]
pir||C81994 hypothetical protein NMA0032 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB72040.1| (AJ391262) hypothetical protein [Neisseria meningitidis]
emb|CAB83351.1| (AL162752) hypothetical protein NMA0032 [Neisseria meningitidis
Z2491]
Length = 230
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 124 NNAKVL-GSCSYHNRLSFALLLVCAQKEAIDYVIIHELAHTIHKNHSKNFWRCVQIFCPN 182
+NAK G C H + L+ + DYV IHEL H H +HS FW V P+
Sbjct: 152 SNAKTFWGVCRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPH 211
Query: 183 YRALRERLK 191
+ LK
Sbjct: 212 TDNAKSWLK 220
>gb|AAD24686.1|AF083877_6 (AF083877) unknown [Erwinia amylovora]
Length = 90
Score = 43.5 bits (101), Expect = 0.001
Identities = 18/41 (43%), Positives = 26/41 (62%)
Query: 152 IDYVIIHELAHTIHKNHSKNFWRCVQIFCPNYRALRERLKQ 192
IDYVI+HEL H NHS+ F+R + P +R ++ RL +
Sbjct: 40 IDYVILHELCHLAEHNHSERFYRLMAQVMPQWRTIKVRLDE 80
>ref|NP_297587.1| (NC_002488) hypothetical protein [Xylella fastidiosa 9a5c]
pir||B82823 hypothetical protein XF0294 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83107.1|AE003883_2 (AE003883) hypothetical protein [Xylella fastidiosa 9a5c]
Length = 114
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/85 (25%), Positives = 44/85 (50%)
Query: 102 LEQKLPLIAQKMQTSYTHFSIRNNAKVLGSCSYHNRLSFALLLVCAQKEAIDYVIIHELA 161
L++++ A K++ + +++ + GSCS ++ A L+ ++ DYVI+HEL
Sbjct: 11 LKRRVLAWAVKLKVNPRAVRVQDMHRKWGSCSSTGTITLASDLLDQEQRFQDYVIVHELL 70
Query: 162 HTIHKNHSKNFWRCVQIFCPNYRAL 186
H H + F + + P +RA+
Sbjct: 71 HLRFATHGRMFKALMSAYVPGWRAM 95
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,458,467
Number of Sequences: 1026957
Number of extensions: 4396040
Number of successful extensions: 14635
Number of sequences better than 1.0e-02: 43
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14588
Number of HSP's gapped (non-prelim): 46
length of query: 206
length of database: 324,149,939
effective HSP length: 115
effective length of query: 91
effective length of database: 206,049,884
effective search space: 18750539444
effective search space used: 18750539444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)