BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645428|ref|NP_207602.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207602.1| (NC_000915) hypothetical protein [Helicoba... 348 2e-95
ref|NP_223463.1| (NC_000921) putative FLAGELLAR BIOSYNTHESI... 345 1e-94
ref|NP_282549.1| (NC_002163) possible flagellar protein [Ca... 122 3e-27
ref|NP_214280.1| (NC_000918) flagellar biosynthesis FliL [A... 100 1e-20
ref|NP_623049.1| (NC_003869) Flagellar basal body-associate... 66 2e-10
ref|NP_389512.1| (NC_000964) flagellar protein [Bacillus su... 65 4e-10
gb|AAD15906.1| (AF069392) polar flagellar protein FliL [Vib... 63 2e-09
gb|AAA22445.1| (M37691) ORF-A, 3' end [Bacillus subtilis] 58 4e-08
ref|NP_348770.1| (NC_003030) Flagellar protein FliL [Clostr... 58 4e-08
ref|NP_231758.1| (NC_002505) flagellar protein FliL, putati... 58 6e-08
ref|NP_521940.1| (NC_003296) PROBABLE FLAGELLAR FLIL TRANSM... 50 9e-06
gb|AAD00576.1| (U86075) FliL [Rhodobacter sphaeroides] 42 0.003
ref|NP_212413.1| (NC_001318) flagellar protein (fliL) [Borr... 42 0.003
ref|NP_228486.1| (NC_000853) flagellar protein, putative [T... 42 0.004
dbj|BAB62250.1| (AB046578) orf [Treponema medium] 41 0.006
>ref|NP_207602.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64621 hypothetical protein HP0809 - Helicobacter pylori (strain 26695)
gb|AAD07860.1| (AE000592) H. pylori predicted coding region HP0809 [Helicobacter
pylori 26695]
Length = 183
Score = 348 bits (893), Expect = 2e-95
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ
Sbjct: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
Query: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL
Sbjct: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
Query: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF
Sbjct: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
Query: 181 IIQ 183
IIQ
Sbjct: 181 IIQ 183
>ref|NP_223463.1| (NC_000921) putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
pir||H71894 probable flagellar biosynthesis protein - Helicobacter pylori
(strain J99)
gb|AAD06317.1| (AE001505) putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 183
Score = 345 bits (885), Expect = 1e-94
Identities = 182/183 (99%), Positives = 182/183 (99%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
MAEEQENTAQQP KKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ
Sbjct: 1 MAEEQENTAQQPQKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
Query: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL
Sbjct: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
Query: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF
Sbjct: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
Query: 181 IIQ 183
IIQ
Sbjct: 181 IIQ 183
>ref|NP_282549.1| (NC_002163) possible flagellar protein [Campylobacter jejuni]
pir||H81285 probable flagellar protein Cj1408 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73832.1| (AL139078) possible flagellar protein [Campylobacter jejuni]
Length = 178
Score = 122 bits (305), Expect = 3e-27
Identities = 68/182 (37%), Positives = 108/182 (58%), Gaps = 5/182 (2%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
M EE EN + K ++ ++I +++L ++GVI L+ + + E +E +
Sbjct: 1 MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAK 60
Query: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLL 120
A+ + A+ GS+ +GP+Y +D PF +NL+S +G RY+K +I LE ++E L
Sbjct: 61 ADK-PKVSAPAQRGSDFAN---IGPMYPLD-PFTLNLLSDSGSRYVKCTIELEQNSELLK 115
Query: 121 NEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDF 180
E+ K I+D II L++K+ EEV T KGK +LKDE+ +N L DGFIKNV+FTDF
Sbjct: 116 PELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDF 175
Query: 181 II 182
++
Sbjct: 176 VV 177
>ref|NP_214280.1| (NC_000918) flagellar biosynthesis FliL [Aquifex aeolicus]
sp|O67712|FLIL_AQUAE Flagellar fliL protein
pir||F70460 flagellar biosynthesis FliL - Aquifex aeolicus
gb|AAC07676.1| (AE000760) flagellar biosynthesis FliL [Aquifex aeolicus]
Length = 161
Score = 100 bits (248), Expect = 1e-20
Identities = 63/186 (33%), Positives = 99/186 (52%), Gaps = 30/186 (16%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGV---IIMLLMGNKEESKENASKNTQ 57
MAEE AQ K K L+F++ L+++LL G L KEE KE +
Sbjct: 1 MAEEVREEAQAGGGKKK-LIFLL----LLLILLAGAGAGAYFFLFAKKEEKKEEKAPKVA 55
Query: 58 EVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNE 117
+ +G +Y +D PF VNL Y + SI+LE++N+
Sbjct: 56 PPE----------------------VGIMYKLDPPFIVNLADPEATVYARISITLEVANQ 93
Query: 118 KLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFF 177
++L EV+ K+ I+D IIEI+SSK+ E+ T +G+ +LK E+ +N+ L +G ++NV+F
Sbjct: 94 QVLQEVQKKEPVIRDAIIEIISSKTSNEIRTPEGREQLKLEVLKRINTILSEGGVRNVYF 153
Query: 178 TDFIIQ 183
T+F+IQ
Sbjct: 154 TEFVIQ 159
>ref|NP_623049.1| (NC_003869) Flagellar basal body-associated protein
[Thermoanaerobacter tengcongensis]
gb|AAM24653.1| (AE013101) Flagellar basal body-associated protein
[Thermoanaerobacter tengcongensis]
Length = 135
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/97 (32%), Positives = 60/97 (60%), Gaps = 2/97 (2%)
Query: 87 YAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEV 146
Y+ F NL +++K + L++++ K+L +++ I+D II+IL SK+ +EV
Sbjct: 41 YSPGGEFITNLKGDG--KFIKVVVELQVTDPKVLKKLEENTPQIRDAIIQILRSKTAQEV 98
Query: 147 VTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDFIIQ 183
+G+ LK++IK+ +N + +G + NV+F DFI+Q
Sbjct: 99 EGPQGQEMLKNDIKNEINKIIGEGKVVNVYFNDFIVQ 135
>ref|NP_389512.1| (NC_000964) flagellar protein [Bacillus subtilis]
sp|P23452|FLIL_BACSU Flagellar fliL protein
pir||A38845 flagellar protein required for flagellar formation fliL - Bacillus
subtilis
emb|CAA39529.1| (X56049) ORF 10 [Bacillus subtilis]
emb|CAB13503.1| (Z99112) flagellar protein [Bacillus subtilis]
Length = 140
Score = 65.1 bits (157), Expect = 4e-10
Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 28/167 (16%)
Query: 17 KALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEAKEGSN 76
K L +I+ +L+++ +G ++G K E E A K+ E+ A+ + +
Sbjct: 2 KKKLMIILLIILIVIGALGAAAYFVLGGKSEKSE-AKKSIDEIVASSV-----------D 49
Query: 77 IQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIE 136
+++ NL S N ++ +I LE ++K E++ +D +KD +I
Sbjct: 50 VEE-------------ITTNLKSDN---IIRLAIKLETDSDKSKEELEKRDFQVKDAVIS 93
Query: 137 ILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDFIIQ 183
+L+ + +++ +KGK K E+K +NS+L +G ++ V+ T F +Q
Sbjct: 94 LLADTNADQIEGDKGKETFKKELKDKINSYLQEGKVEKVYITSFNLQ 140
>gb|AAD15906.1| (AF069392) polar flagellar protein FliL [Vibrio parahaemolyticus]
Length = 167
Score = 62.8 bits (151), Expect = 2e-09
Identities = 51/189 (26%), Positives = 88/189 (45%), Gaps = 28/189 (14%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESK--ENASKNTQE 58
MAEEQ A P KSK L+ +I +V+V+L G LMG+ + ++ E S+ TQ
Sbjct: 1 MAEEQLQGADAPKGKSKLLIIII--AVVVLLGGGGAAAFFLMGSDDSAQAAEAESQQTQA 58
Query: 59 VQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEK 118
ANP+A N + PF N+ R ++ L + +
Sbjct: 59 AAANPIAYVN--------------------LPQPFIFNVTGDRRDRLVQIKAQLMVRGSE 98
Query: 119 LLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKD----EIKSHLNSFLIDGFIKN 174
+ ++ +++ +S +VE++ + G+ +L+D +IK+ LN+ + I+
Sbjct: 99 NEQLARYHSPLVESSLLSTFASATVEQLRSPTGRVELRDRASEDIKAALNAAVGKPVIEK 158
Query: 175 VFFTDFIIQ 183
V FTDF+IQ
Sbjct: 159 VLFTDFVIQ 167
>gb|AAA22445.1| (M37691) ORF-A, 3' end [Bacillus subtilis]
Length = 84
Score = 58.2 bits (139), Expect = 4e-08
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 106 LKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNS 165
++ +I LE ++K E++ +D +KD +I +L+ + +++ +KGK K E+K +NS
Sbjct: 7 IRLAIKLETDSDKSKEELEKRDFQVKDAVISLLADTNADQIEGDKGKETFKKELKDKINS 66
Query: 166 FLIDGFIKNVFFTDFIIQ 183
+L +G ++ V+ T F +Q
Sbjct: 67 YLQEGKVEKVYITSFNLQ 84
>ref|NP_348770.1| (NC_003030) Flagellar protein FliL [Clostridium acetobutylicum]
gb|AAK80110.1|AE007715_15 (AE007715) Flagellar protein FliL [Clostridium acetobutylicum]
Length = 171
Score = 58.2 bits (139), Expect = 4e-08
Identities = 47/190 (24%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
M+E++++ ++ KSK ++ +++ V++++ + + + +K K S NT
Sbjct: 1 MSEKKKDKGEKGGGKSKIIIILLM--VIIVVFIAAALAYFFVFSK---KSPTSTNTTATN 55
Query: 61 ANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELS--NEK 118
A N E S ++ L NL +G +Y+K ++++ S N K
Sbjct: 56 AATTTEANVEENTYS-FEEILT-------------NLADTDGAKYIKVTVAVGYSSKNSK 101
Query: 119 LLNEVK-----VKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIK 173
L E++ +K ++D I+ +L SK + T G +++K EIK +N L +G I
Sbjct: 102 LKEELEDTKEDIKTPIMRDIIVNVLRSKKAADF-TPTGIDQMKKEIKEGINPHLKNGQID 160
Query: 174 NVFFTDFIIQ 183
NV+F++ +IQ
Sbjct: 161 NVYFSNLVIQ 170
>ref|NP_231758.1| (NC_002505) flagellar protein FliL, putative [Vibrio cholerae]
pir||A82117 probable flagellar protein FliL VC2127 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95272.1| (AE004285) flagellar protein FliL, putative [Vibrio cholerae]
Length = 167
Score = 57.8 bits (138), Expect = 6e-08
Identities = 46/189 (24%), Positives = 87/189 (45%), Gaps = 28/189 (14%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
MAEE T + PK K LL +II +V+++ G ++ +E+ +A + T++V
Sbjct: 1 MAEEDLGT--EAPKGKKKLLIIIIAAVVLLAGGGGAAFFMMGSGGDEAAADAEQKTEQVA 58
Query: 61 A--NPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRRYLKASISLELSNEK 118
A +P++ N I PF N+ R ++ + L + +
Sbjct: 59 APTDPVSYVN--------------------IAQPFVFNVTGDAKDRLVQIKVQLMVRGSE 98
Query: 119 LLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKG----KNKLKDEIKSHLNSFLIDGFIKN 174
N + ++ +++ +S +VE++ T G ++K D+IK+ LN + I+
Sbjct: 99 NENLARYHSPLVESSLLATFASATVEQLRTPNGRIELRDKATDDIKAALNQAVGKPVIEK 158
Query: 175 VFFTDFIIQ 183
V FTDF++Q
Sbjct: 159 VLFTDFVMQ 167
>ref|NP_521940.1| (NC_003296) PROBABLE FLAGELLAR FLIL TRANSMEMBRANE PROTEIN
[Ralstonia solanacearum]
emb|CAD17530.1| (AL646078) PROBABLE FLAGELLAR FLIL TRANSMEMBRANE PROTEIN [Ralstonia
solanacearum]
Length = 164
Score = 50.4 bits (119), Expect = 9e-06
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 7 NTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMAN 66
NTA P K L +II VLV++ + G +G + A P A
Sbjct: 8 NTAPAPAKGGSTKLLLIILIVLVLIGMGGAAAWFFLGGGSHA------------AGPAAP 55
Query: 67 KNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGR-RYLKASISLELSNEKLLNEVKV 125
+ P++ VNL + G RYL+ +I+ + N+ E+K
Sbjct: 56 PKPKE-------------PVFVPMETLTVNLQPEEGNDRYLQIAITFKSYNKHAEEEIKS 102
Query: 126 KDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEI----KSHLNSFLIDGFIKNVFFTDFI 181
++ ++ +LSSK+ E+ +N+GK KL EI + + + + +V FT+F+
Sbjct: 103 YTPELRSRVLMLLSSKAPAELYSNEGKAKLAKEIVEQCEQAYKAVGKESPVVDVLFTNFV 162
Query: 182 IQ 183
IQ
Sbjct: 163 IQ 164
>gb|AAD00576.1| (U86075) FliL [Rhodobacter sphaeroides]
Length = 189
Score = 42.4 bits (98), Expect = 0.003
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 87 YAIDAPFAVNLVSQNGRRYLKASISLELS-NEKLLNEVKVKDTAIKDTIIEILSSKSVEE 145
Y P NL + RR L+A I L ++K+++ V + A++ ++ I+ + S EE
Sbjct: 91 YQFKEPLTTNL--RASRRLLQAGIGLSTQYDQKVMDNVARNEVALRSDMLAIVGTFSEEE 148
Query: 146 VVTNKGKNKLKDEIKSHLNSFL--IDGF--IKNVFFTDFIIQ 183
+ G+++L E++ +N+ L ++GF I+ VFF FI+Q
Sbjct: 149 LQDKAGRDRLA-ELRGAVNARLQQLEGFGGIEAVFFPSFILQ 189
>ref|NP_212413.1| (NC_001318) flagellar protein (fliL) [Borrelia burgdorferi]
sp|Q57442|FLIL_BORBU Flagellar fliL protein
pir||G70134 flagellar protein (fliL) homolog - Lyme disease spirochete
gb|AAA85603.1| (U43739) orf25; Method: conceptual translation supplied by author
[Borrelia burgdorferi]
gb|AAB58964.1| (L75945) flagellar protein [Borrelia burgdorferi]
gb|AAC66669.1| (AE001137) flagellar protein (fliL) [Borrelia burgdorferi]
Length = 178
Score = 42.4 bits (98), Expect = 0.003
Identities = 24/77 (31%), Positives = 44/77 (56%), Gaps = 3/77 (3%)
Query: 106 LKASISLELSNEKLLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNS 165
+K ++ +N +LNE+ + +KD I E S ++ +E+ K ++++K EIK+ +NS
Sbjct: 102 VKLALGYAENNVNILNELGRQKVRLKDIIREYFSQRTGQEI---KNESQIKAEIKARINS 158
Query: 166 FLIDGFIKNVFFTDFII 182
L +G IK + T I
Sbjct: 159 ILRNGEIKEIALTQIDI 175
>ref|NP_228486.1| (NC_000853) flagellar protein, putative [Thermotoga maritima]
pir||D72347 hypothetical protein TM0678 - Thermotoga maritima (strain MSB8)
gb|AAD35761.1|AE001740_7 (AE001740) flagellar protein, putative [Thermotoga maritima]
Length = 169
Score = 41.6 bits (96), Expect = 0.004
Identities = 42/174 (24%), Positives = 75/174 (42%), Gaps = 29/174 (16%)
Query: 1 MAEEQENTAQQPPKKSKALLFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQ 60
MAEE+ +QP ++ A L I LV+ + V ++ + +G+ N K + V
Sbjct: 1 MAEEERREEEQPKRRMGASLITSIVVPLVVSVAVYFLLPMFLGS------NQGKQGENVP 54
Query: 61 ANPMANKNQEAKEGSNIQQYLVLG--PLYAIDAPFAVNLVSQNGRRYLKASISLELSNEK 118
+ P+ K ++G N Q +L+ G + ID S+S + ++
Sbjct: 55 STPVRIKAVLIQQGEN-QTFLLKGGRDVVVID------------------SLSFSVGSDA 95
Query: 119 LLNEVKVKDTAIKDTIIEILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFI 172
+ + I D ++ I SK E+ T G LK +I+ +N+ I GF+
Sbjct: 96 CRAAIAERKDEIMDALMMIFLSKDKSELSTVPGLELLKRQIRDAVNT--ITGFV 147
>dbj|BAB62250.1| (AB046578) orf [Treponema medium]
Length = 160
Score = 41.2 bits (95), Expect = 0.006
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 19/166 (11%)
Query: 20 LFVIIGSVLVMLLLVGVIIMLLMGNKEESKENASKNTQEVQANPMANKNQEAKEGSNIQQ 79
LF ++ S++++L+ + ++I ++ +++KE AS+ E A A +
Sbjct: 9 LFKLLRSIIIVLIAI-IVIGTVIAFVKKTKERASERQNEEPAGGAAYIPPK-----EYAL 62
Query: 80 YLVLGPLYAIDA---PFAVNLVSQNGRRYLKASISLELSNEKLLNEVKVKDTAIKDTIIE 136
Y LG L A+ A P V LK + + S+ E+ K A+K +I++
Sbjct: 63 YGDLGQLRAVTADNPPITV---------ILKPFLEYKASDTAFQEELVAKKDALKKSILD 113
Query: 137 ILSSKSVEEVVTNKGKNKLKDEIKSHLNSFLIDGFIKNVFFTDFII 182
S +S + + ++ +K + +N L+ G I N++F +F+I
Sbjct: 114 WFSLESAYRLSSELPQD-IKQTLMERINKQLVLGKIHNIYFEEFVI 158
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.313 0.131 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,687,368
Number of Sequences: 1026957
Number of extensions: 3603827
Number of successful extensions: 14564
Number of sequences better than 1.0e-02: 15
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14548
Number of HSP's gapped (non-prelim): 15
length of query: 183
length of database: 324,149,939
effective HSP length: 114
effective length of query: 69
effective length of database: 207,076,841
effective search space: 14288302029
effective search space used: 14288302029
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 93 (40.4 bits)