BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645429|ref|NP_207603.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(200 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207603.1| (NC_000915) conserved hypothetical protein... 398 e-110
ref|NP_223464.1| (NC_000921) putative [Helicobacter pylori ... 370 e-102
ref|NP_282601.1| (NC_002163) possible DNA methylase [Campyl... 110 7e-24
ref|NP_604226.1| (NC_003454) Methyltransferase [Fusobacteri... 96 3e-19
ref|NP_623102.1| (NC_003869) N6-adenine-specific methylase ... 89 2e-17
ref|NP_471493.1| (NC_003212) similar to unknown proteins [L... 89 4e-17
ref|NP_224801.1| (NC_000922) predicted Methylase [Chlamydop... 87 1e-16
ref|NP_657967.1| (NC_003995) UPF0020, Putative RNA methylas... 86 2e-16
ref|NP_465577.1| (NC_003210) similar to unknown proteins [L... 86 2e-16
ref|NP_220001.1| (NC_000117) Methylase [Chlamydia trachomat... 84 9e-16
ref|NP_348363.1| (NC_003030) N6-adenine-specific methylase ... 82 4e-15
ref|NP_297147.1| (NC_002620) conserved hypothetical protein... 82 4e-15
ref|NP_359376.1| (NC_003098) Conserved hypothetical protein... 81 6e-15
ref|NP_562646.1| (NC_003366) conserved hypothetical protein... 81 6e-15
ref|NP_462473.1| (NC_003197) putative methyltransferase [Sa... 81 8e-15
ref|NP_458349.1| (NC_003198) conserved hypothetical protein... 81 8e-15
ref|NP_607623.1| (NC_003485) conserved hypothetical protein... 80 1e-14
ref|NP_269611.1| (NC_002737) conserved hypothetical protein... 80 1e-14
ref|NP_637746.1| (NC_003902) conserved hypothetical protein... 80 1e-14
ref|NP_290013.1| (NC_002655) orf, hypothetical protein [Esc... 79 3e-14
ref|NP_417922.1| (NC_000913) orf, hypothetical protein [Esc... 79 3e-14
ref|NP_298269.1| (NC_002488) conserved hypothetical protein... 79 3e-14
ref|NP_243456.1| (NC_002570) BH2590~unknown conserved prote... 78 5e-14
ref|NP_346396.1| (NC_003028) type II DNA modification methy... 77 1e-13
ref|NP_326519.1| (NC_002771) DNA METHYLASE [Mycoplasma pulm... 77 1e-13
ref|NP_642842.1| (NC_003919) conserved hypothetical protein... 77 1e-13
ref|NP_389384.1| (NC_000964) similar to hypothetical protei... 77 1e-13
ref|NP_268320.1| (NC_002662) conserved hypothetical protein... 76 2e-13
ref|NP_283001.1| (NC_003116) possible DNA methylase [Neisse... 75 3e-13
ref|NP_407263.1| (NC_003143) conserved hypothetical protein... 75 3e-13
ref|NP_273180.1| (NC_003112) conserved hypothetical protein... 75 6e-13
ref|NP_212340.1| (NC_001318) conserved hypothetical protein... 74 7e-13
ref|NP_371648.1| (NC_002758) conserved hypothetical protein... 74 1e-12
ref|NP_442033.1| (NC_000911) hypothetical protein [Synechoc... 71 8e-12
ref|NP_485410.1| (NC_003272) hypothetical protein [Nostoc s... 70 1e-11
ref|NP_419046.1| (NC_002696) conserved hypothetical protein... 70 1e-11
ref|NP_108389.1| (NC_002678) hypothetical protein [Mesorhiz... 69 4e-11
ref|NP_239864.1| (NC_002528) hypothetical protein [Buchnera... 68 7e-11
ref|NP_229189.1| (NC_000853) conserved hypothetical protein... 66 3e-10
ref|NP_600548.1| (NC_003450) COG0742:N6-adenine-specific me... 66 3e-10
ref|NP_438926.1| (NC_000907) conserved hypothetical protein... 65 6e-10
gb|EAA02211.1| (AAAB01003112) ebiP1003 [Anopheles gambiae s... 64 8e-10
ref|NP_249061.1| (NC_002516) conserved hypothetical protein... 64 1e-09
ref|NP_353714.1| (NC_003062) AGR_C_1242p [Agrobacterium tum... 64 1e-09
ref|NP_229804.1| (NC_002505) conserved hypothetical protein... 64 1e-09
ref|NP_542016.1| (NC_003318) METHYLTRANSFERASE [Brucella me... 63 2e-09
ref|NP_218505.1| (NC_000919) conserved hypothetical protein... 63 2e-09
ref|NP_384908.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 62 3e-09
pir||T44702 hypothetical protein MLCB1243.09 [imported] - M... 62 3e-09
ref|NP_217482.1| (NC_000962) hypothetical protein Rv2966c [... 61 8e-09
gb|AAG30412.1|AF262949_3 (AF262949) hypothetical methyltran... 60 2e-08
ref|NP_246455.1| (NC_002663) unknown [Pasteurella multocida... 59 2e-08
ref|NP_518510.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 59 2e-08
ref|NP_294366.1| (NC_001263) N-6 adenine-specific DNA restr... 59 3e-08
ref|NP_661857.1| (NC_002932) methylase, putative [Chlorobiu... 59 4e-08
pir||S54842 hypothetical protein 21.7K in ftsY 5' region - ... 58 7e-08
ref|NP_629702.1| (NC_003888) putative DNA methylase [Strept... 55 4e-07
pir||S73056 u0002d protein - Mycobacterium tuberculosis >gi... 55 5e-07
dbj|BAB02862.1| (AB026644) gb|AAC66597.1~gene_id:MFJ20.15~s... 52 3e-06
ref|NP_302144.1| (NC_002677) conserved hypothetical protein... 50 2e-05
ref|NP_189487.1| (NM_113766) unknown protein [Arabidopsis t... 49 4e-05
ref|NP_603930.1| (NC_003454) Methyltransferase [Fusobacteri... 48 6e-05
ref|NP_196664.1| (NM_121141) putative protein [Arabidopsis ... 42 0.004
>ref|NP_207603.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||B64621 conserved hypothetical protein HP0810 - Helicobacter pylori
(strain 26695)
gb|AAD07856.1| (AE000592) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 200
Score = 398 bits (1022), Expect = e-110
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSG 60
MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSG
Sbjct: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSG 60
Query: 61 SASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
SASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL
Sbjct: 61 SASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
Query: 121 CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL
Sbjct: 121 CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
Query: 181 VTLAIIKQKKFGKTTLTYFQ 200
VTLAIIKQKKFGKTTLTYFQ
Sbjct: 181 VTLAIIKQKKFGKTTLTYFQ 200
>ref|NP_223464.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71895 hypothetical protein jhp0746 - Helicobacter pylori (strain J99)
gb|AAD06318.1| (AE001505) putative [Helicobacter pylori J99]
Length = 200
Score = 370 bits (951), Expect = e-102
Identities = 187/200 (93%), Positives = 191/200 (95%)
Query: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSG 60
MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ EINGAHFIEVFSG
Sbjct: 1 MPNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQTEINGAHFIEVFSG 60
Query: 61 SASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
SASMGLEALSRGAKSAVFFEQNK+AY TLLENISLFKNRLKKE+EIQTFLDDAFKLLPTL
Sbjct: 61 SASMGLEALSRGAKSAVFFEQNKNAYATLLENISLFKNRLKKEIEIQTFLDDAFKLLPTL 120
Query: 121 CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
LKNGVLNIIYLDPPFETSGFLGIYEKCF ALERLL R + KNL VVFEHES+HEMPKSL
Sbjct: 121 RLKNGVLNIIYLDPPFETSGFLGIYEKCFHALERLLNRSHSKNLFVVFEHESLHEMPKSL 180
Query: 181 VTLAIIKQKKFGKTTLTYFQ 200
TLAIIKQKKFGKTTLTYFQ
Sbjct: 181 ATLAIIKQKKFGKTTLTYFQ 200
>ref|NP_282601.1| (NC_002163) possible DNA methylase [Campylobacter jejuni]
pir||D81292 probable DNA methylase Cj1461 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73884.1| (AL139078) possible DNA methylase [Campylobacter jejuni]
Length = 227
Score = 110 bits (276), Expect = 7e-24
Identities = 70/190 (36%), Positives = 104/190 (53%), Gaps = 12/190 (6%)
Query: 12 IIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSR 71
I G KG L LP++++TR TK+IV+ FN ++ ++ FIE F GSA + EALS
Sbjct: 46 IESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEALSN 105
Query: 72 GAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIY 131
A A E + AYK LEN + ++ + F++LP L + I+Y
Sbjct: 106 YALKAYAIELDIKAYKIALENAK------NIDPNLEVIHANTFEILPKLIENSKNEIILY 159
Query: 132 LDPPFE-TSGFLGIYEKCFQALERL-LKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQK 189
LDPPF+ GF IYEK + LE L LK N L++FE+ S + P+ + +K+K
Sbjct: 160 LDPPFDIREGFSDIYEKIYHFLENLDLKTLN----LIIFEYHSTIKTPEKIQNFQKVKEK 215
Query: 190 KFGKTTLTYF 199
KFG T+L+++
Sbjct: 216 KFGSTSLSFY 225
>ref|NP_604226.1| (NC_003454) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95525.1| (AE010638) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 182
Score = 95.5 bits (236), Expect = 3e-19
Identities = 56/189 (29%), Positives = 104/189 (54%), Gaps = 10/189 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+II G K + TRPT V+ES F+ + I G+ F+++FSGS S+ LEA+S
Sbjct: 2 RIIAGEAKNRIIKTRKGFDTRPTLESVKESLFSIIAPYIEGSIFLDLFSGSGSISLEAIS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGAK AV E++ A K ++ENI + L + + +D + + L KN +II
Sbjct: 62 RGAKRAVMIEKDGEALKYIIENI----DNLGFSDRCRAYKNDVIRAIEILGRKNEKFDII 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
++DPP++ + + +K +A+++ ++ L++ EH + ++ ++V+ ++K
Sbjct: 118 FMDPPYQDN----VTKKVLKAIDK--ANILAEDGLIICEHHLLEDLEDNIVSFRKTDERK 171
Query: 191 FGKTTLTYF 199
+ K LT++
Sbjct: 172 YNKKILTFY 180
>ref|NP_623102.1| (NC_003869) N6-adenine-specific methylase [Thermoanaerobacter
tengcongensis]
gb|AAM24706.1| (AE013106) N6-adenine-specific methylase [Thermoanaerobacter
tengcongensis]
Length = 189
Score = 89.4 bits (220), Expect = 2e-17
Identities = 55/193 (28%), Positives = 101/193 (51%), Gaps = 10/193 (5%)
Query: 8 KKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLE 67
K ++IGG KG + RPT V+E+ FN L I G+ F+++F+G+ ++G+E
Sbjct: 4 KSLRVIGGTLKGRKIKSLEGEEVRPTSDRVKEALFNILMNRIEGSVFLDLFAGTGNVGIE 63
Query: 68 ALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVL 127
ALSRGA+ F +++ ++ K + EN+ L+ + + F DAF L K+
Sbjct: 64 ALSRGAEFCYFVDKSTNSVKCIRENV----EGLELQPFCKIFHKDAFTALEIFHKKSVKF 119
Query: 128 NIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIK 187
+II+LDPP+ + + EK + + L + +V+ E E+ + L ++
Sbjct: 120 DIIFLDPPY----YQNLAEKALRRIGSL--EVLKEGGIVIAEVHKRDELKERYGKLKKVR 173
Query: 188 QKKFGKTTLTYFQ 200
+ K+G+T L +++
Sbjct: 174 ENKYGETILMFYE 186
>ref|NP_471493.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC97389.1| (AL596171) similar to unknown proteins [Listeria innocua]
Length = 185
Score = 88.6 bits (218), Expect = 4e-17
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 14/192 (7%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
++I G KG L ++TRPT V+ES F+ + +G +++F+GS +G+EALS
Sbjct: 2 RVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDIVLDLFAGSGGLGIEALS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENIS--LFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLN 128
RGA+ AVF +Q A KT+ +NI F R + + +DA + L L +
Sbjct: 62 RGAERAVFIDQATLAIKTIRQNIEGCHFTER------AEVYRNDAERALKLLHKNEWKFD 115
Query: 129 IIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQ 188
+++LDPP++ EK ALE+L +N +V EH+ MP ++ IK
Sbjct: 116 LVFLDPPYKKQQL----EKLLIALEKL--ELVSENGRIVCEHDKEAVMPDTIGKFEKIKS 169
Query: 189 KKFGKTTLTYFQ 200
+G T L+ F+
Sbjct: 170 VSYGITVLSIFE 181
>ref|NP_224801.1| (NC_000922) predicted Methylase [Chlamydophila pneumoniae CWL029]
ref|NP_300661.1| (NC_002491) methylase [Chlamydophila pneumoniae J138]
ref|NP_444694.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||G72057 conserved hypothetical protein CP0142 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18744.1| (AE001645) predicted Methylase [Chlamydophila pneumoniae CWL029]
gb|AAF38024.1| (AE002175) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98812.1| (AP002547) methylase [Chlamydophila pneumoniae J138]
Length = 186
Score = 86.7 bits (213), Expect = 1e-16
Identities = 60/194 (30%), Positives = 101/194 (51%), Gaps = 20/194 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+I+ G KG L + RPT +V+E+FF+ + +I GA F+++F+G ++G EALS
Sbjct: 2 RILAGKYKGKSLKTFSNPHIRPTSGLVKEAFFSICREDIEGAAFLDLFAGMGAIGFEALS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA S VF + + A + + N +L L +++ + F DA + L + ++I
Sbjct: 62 RGAASVVFVDISIKAIQLIHTNSAL----LGEQLPVVIFRQDAQSAIQRLIKQKRSFDLI 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLL-----VVFEHESMHEMPKSLVTLAI 185
Y+DPP YE C +E LL++ N+L + E+ S E+ +TL
Sbjct: 118 YIDPP---------YELCNCYVETLLQKIVSGNILNPEGTLFLENASDEEIACEGLTLR- 167
Query: 186 IKQKKFGKTTLTYF 199
+++K GKT L +
Sbjct: 168 -RRRKLGKTYLAEY 180
>ref|NP_657967.1| (NC_003995) UPF0020, Putative RNA methylase family UPF0020
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 188
Score = 86.3 bits (212), Expect = 2e-16
Identities = 51/190 (26%), Positives = 103/190 (53%), Gaps = 10/190 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+++ G CKG L ++TRPT V+ES FN + +G +++F GS +G+EA+S
Sbjct: 2 RVVSGKCKGHPLKAVPGNTTRPTTDKVKESIFNMIGPYFDGGIALDLFGGSGGLGIEAIS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG A+F +++ A KT+ +N+ R++++ E+ + +DA + + L + ++I
Sbjct: 62 RGIDKAIFVDRDNKAIKTIHQNLE--SCRIQEQAEV--YRNDAERAIKALIKREMSFDLI 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
+DPP++ + + Q LL L++ EH + +P+S+ L ++ +K
Sbjct: 118 LIDPPYKDQKIVSLISVMDQ--HGLLHNAG----LIMAEHGNDVVLPESIGRLVKVRAEK 171
Query: 191 FGKTTLTYFQ 200
+G T ++ ++
Sbjct: 172 YGITAISIYK 181
>ref|NP_465577.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAD00131.1| (AL591982) similar to unknown proteins [Listeria monocytogenes]
Length = 185
Score = 86.3 bits (212), Expect = 2e-16
Identities = 60/192 (31%), Positives = 98/192 (50%), Gaps = 14/192 (7%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
++I G KG L ++TRPT V+ES F+ + +G +++F+GS +G+EALS
Sbjct: 2 RVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDMVLDLFAGSGGLGIEALS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENIS--LFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLN 128
RGA+ AVF +Q A KT+ +N+ F R + + +DA + L L +
Sbjct: 62 RGAERAVFIDQAALAIKTIRQNLEGCHFTER------AEVYRNDAERALKLLHKNEWKFD 115
Query: 129 IIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQ 188
+I+LDPP++ EK LE+L +N ++ EH+ MP ++ IK
Sbjct: 116 LIFLDPPYKKQQL----EKLIGTLEKL--ELVNENGRIICEHDKEAIMPDTIGKFEKIKS 169
Query: 189 KKFGKTTLTYFQ 200
+G T L+ F+
Sbjct: 170 VSYGITVLSIFE 181
>ref|NP_220001.1| (NC_000117) Methylase [Chlamydia trachomatis]
pir||E71508 probable methylase - Chlamydia trachomatis (serotype D, strain
UW3/Cx)
gb|AAC68087.1| (AE001322) Methylase [Chlamydia trachomatis]
Length = 190
Score = 84.0 bits (206), Expect = 9e-16
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
KI+ G KG L + S RPT +V+E+ FN I GA F+++F+GS SMG EA+S
Sbjct: 2 KILSGKFKGKSLKTFSNPSVRPTCGVVKEAVFNICANHIVGARFLDLFAGSGSMGFEAIS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA+SA F + + A + + N++L L + + D L L +N +I+
Sbjct: 62 RGAESATFVDSSVEAVRLIRANLAL----LDSNLPVHILKQDVRSALLRLGKQNRSFDIV 117
Query: 131 YLDPPF 136
Y+DPP+
Sbjct: 118 YIDPPY 123
>ref|NP_348363.1| (NC_003030) N6-adenine-specific methylase [Clostridium
acetobutylicum]
gb|AAK79703.1|AE007683_2 (AE007683) N6-adenine-specific methylase [Clostridium
acetobutylicum]
Length = 188
Score = 82.0 bits (201), Expect = 4e-15
Identities = 54/192 (28%), Positives = 103/192 (53%), Gaps = 13/192 (6%)
Query: 11 KIIGGACKGLGLNLPN-ISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEAL 69
+II G KG + P + +TRPT V+E+ FN +Q ++ A +++FSG+ S+GLEA
Sbjct: 2 RIISGKAKGRKILPPKGMETTRPTLDRVKEAMFNIIQNDVPEAVVLDMFSGTGSLGLEAA 61
Query: 70 SRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNI 129
SRGAK +++ Y L EN+ L+ + E +T D+++ + L K +
Sbjct: 62 SRGAKVCYLIDKSPITYPILKENV----ENLRFDEECKTLNMDSYEAVRYLASKGKEFTL 117
Query: 130 IYLDPPFETSGFLGIYEKCFQALERLL-KRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQ 188
I++DPP+ E A++ + K+ K+ L+V + +S ++ + + ++
Sbjct: 118 IFIDPPYAK-------EMIPPAIDLICEKKLLTKSGLIVTKIDSDEKIYEGNNEIIMVDH 170
Query: 189 KKFGKTTLTYFQ 200
+K+GKT + +++
Sbjct: 171 RKYGKTIVCFYR 182
>ref|NP_297147.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||D81667 conserved hypothetical protein TC0774 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39577.1| (AE002345) conserved hypothetical protein [Chlamydia muridarum]
Length = 186
Score = 82.0 bits (201), Expect = 4e-15
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
KI+ G KG L + + RPT +V+E+ FN I GA F+++F+GS SMG EA+S
Sbjct: 2 KILAGKFKGKSLKTFSNPAVRPTSGVVKEAVFNICANHIVGARFLDLFAGSGSMGFEAIS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA S F + + A + + N++L N L + D L L + ++I
Sbjct: 62 RGAGSVTFVDSSVDAIRLIRANLALLDNNL----PVHILKQDVRSALLRLGKQKRAFDVI 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
Y+DPP+ + E +++ L +P+ +L + ++ + K L + K++K
Sbjct: 118 YVDPPYSLENAF-LQEVLSYVVQQSL--LDPEGILFLENADTQEIIVKG---LELRKRRK 171
Query: 191 FGKTTLTYF 199
G T L +
Sbjct: 172 SGGTFLAEY 180
>ref|NP_359376.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00587.1| (AE008543) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 179
Score = 81.3 bits (199), Expect = 6e-15
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 15/190 (7%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
KI+ G G L +TRPT VR + FN + G +++++GS + +EA+S
Sbjct: 2 KIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEGGRVLDLYAGSGGLSIEAVS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG SAV E+++ A + ENI + K+ + Q DA + L + +G +++
Sbjct: 62 RGMSSAVLVERDRKAQTIVAENIQM----TKEVGKFQLLKMDAERALEQV---SGEFDLV 114
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKR-FNPKNLLVVFEHESMHEMPKSLVTLAIIKQK 189
+LDPP+ E+ +E++ KR ++++VV E + E+P+ + L I K+K
Sbjct: 115 FLDPPYAK-------EQIVADIEKMAKRELFSEDVMVVCETDKAVELPEEIACLGIWKEK 167
Query: 190 KFGKTTLTYF 199
+G + +T +
Sbjct: 168 IYGISKVTVY 177
>ref|NP_562646.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81436.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 185
Score = 81.3 bits (199), Expect = 6e-15
Identities = 55/190 (28%), Positives = 96/190 (49%), Gaps = 10/190 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+II G +G L P TRPT V+ES F+ +Q I A I+VF+G+ S+GLEA S
Sbjct: 2 RIIAGKARGRKLLSPPTYETRPTLDRVKESMFSMIQWYIPDAVVIDVFAGTGSLGLEAAS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGAK +++ + L +NI L DA+ L +L + V +++
Sbjct: 62 RGAKECYLVDKSPVTFPVLKKNI----ENLGFGDFCHALNTDAYSALRSLASRGKVFDLM 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
++DPP+ + + + +E K ++ L+V + +S E+ + + + K KK
Sbjct: 118 FIDPPY----MKNLIPEAIEIIEE--KNLLQEDGLIVTKIDSSEEIFEGTEKIKLTKVKK 171
Query: 191 FGKTTLTYFQ 200
+G TT+ +++
Sbjct: 172 YGNTTVCFYK 181
>ref|NP_462473.1| (NC_003197) putative methyltransferase [Salmonella typhimurium LT2]
gb|AAL22432.1| (AE008864) putative methyltransferase [Salmonella typhimurium LT2]
Length = 198
Score = 80.9 bits (198), Expect = 8e-15
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 2 PNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGS 61
P H + +IIGG +G L +P+ RPT VRE+ FN L + AH ++ F+GS
Sbjct: 4 PTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVMVDAHCLDCFAGS 63
Query: 62 ASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLC 121
++GLEALSR A A E +++ + L +N++ K + + T L L
Sbjct: 64 GALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKANNARVVNTNT--------LTFLS 115
Query: 122 LKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLV 181
+++++DPPF G+ E+ Q LE + + + L+ E E + +P
Sbjct: 116 QPGTPHHVVFVDPPFRK----GLLEETLQLLE--TQGWLADDALIYVESEVENGLPPVPA 169
Query: 182 TLAIIKQKKFGKTTLTYFQ 200
A+ ++K G+ +Q
Sbjct: 170 NWALYREKVAGQVAYRLYQ 188
>ref|NP_458349.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08058.1| (AL627281) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 198
Score = 80.9 bits (198), Expect = 8e-15
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 14/199 (7%)
Query: 2 PNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGS 61
P H + +IIGG +G L +P+ RPT VRE+ FN L + AH ++ F+GS
Sbjct: 4 PTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVMVDAHCLDCFAGS 63
Query: 62 ASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLC 121
++GLEALSR A A E +++ + L +N++ K + + T L L
Sbjct: 64 GALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKANNARVVNTNT--------LAFLS 115
Query: 122 LKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLV 181
+++++DPPF G+ E+ Q LE + + + L+ E E + +P
Sbjct: 116 QPGTPHHVVFVDPPFRK----GLLEETLQLLE--TQGWLADDALIYVESEVENGLPPVPA 169
Query: 182 TLAIIKQKKFGKTTLTYFQ 200
A+ ++K G+ +Q
Sbjct: 170 NWALYREKVAGQVAYRLYQ 188
>ref|NP_607623.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL98122.1| (AE010069) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 179
Score = 80.5 bits (197), Expect = 1e-14
Identities = 57/192 (29%), Positives = 97/192 (49%), Gaps = 19/192 (9%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+++ G G L + TRPT VR + FN + NG +++F+GS + +EA+S
Sbjct: 2 RVVSGEFGGRPLKTLDGKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFK--NRLK-KEMEIQTFLDDAFKLLPTLCLKNGVL 127
RG +AV E+N+ A + +NI + K NR +ME + +D CL G
Sbjct: 62 RGMSAAVLVEKNRKAQAIIQDNIIITKAENRFTLLKMEAERAID---------CL-TGRF 111
Query: 128 NIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIK 187
++++LDPP+ + E A + LL + ++VV E + +PK + TL I K
Sbjct: 112 DLVFLDPPYAKETIVATIEAL--AAKNLLS----EQVMVVCETDKTVLLPKEIATLGIWK 165
Query: 188 QKKFGKTTLTYF 199
+K +G + +T +
Sbjct: 166 EKIYGISKVTVY 177
>ref|NP_269611.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34332.1| (AE006586) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 179
Score = 80.5 bits (197), Expect = 1e-14
Identities = 57/192 (29%), Positives = 97/192 (49%), Gaps = 19/192 (9%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+++ G G L + TRPT VR + FN + NG +++F+GS + +EA+S
Sbjct: 2 RVVSGEFGGRPLKTLDGKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFK--NRLK-KEMEIQTFLDDAFKLLPTLCLKNGVL 127
RG +AV E+N+ A + +NI + K NR +ME + +D CL G
Sbjct: 62 RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID---------CL-TGRF 111
Query: 128 NIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIK 187
++++LDPP+ + E A + LL + ++VV E + +PK + TL I K
Sbjct: 112 DLVFLDPPYAKETIVATIEAL--AAKNLLS----EQVMVVCETDKTVLLPKEIATLGIWK 165
Query: 188 QKKFGKTTLTYF 199
+K +G + +T +
Sbjct: 166 EKIYGISKVTVY 177
>ref|NP_637746.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41670.1| (AE012348) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 207
Score = 80.5 bits (197), Expect = 1e-14
Identities = 43/137 (31%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+I+GG + L++P + RP+ VRE+ FN L + GA +++F+GS ++GLEA+S
Sbjct: 17 RIVGGRWRNTRLSVPQLPGLRPSSDRVRETLFNWLLPRLAGARVLDLFAGSGALGLEAVS 76
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA A+ E++ + L E+++ RL ++Q DDA + L G ++++
Sbjct: 77 RGAAHALLIERDPGLAQRLREHVA----RLGAAEQVQVLQDDALRWLER--APTGQVDLV 130
Query: 131 YLDPPFETSGFLGIYEK 147
++DPPF + + E+
Sbjct: 131 FVDPPFAAGLWAPVLER 147
>ref|NP_290013.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_312341.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG58574.1|AE005570_1 (AE005570) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37737.1| (AP002565) hypothetical protein [Escherichia coli O157:H7]
Length = 198
Score = 79.0 bits (193), Expect = 3e-14
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 2 PNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGS 61
PNH + +IIGG +G L +P+ RPT VRE+ FN L I A ++ F+GS
Sbjct: 4 PNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGS 63
Query: 62 ASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLC 121
++GLEALSR A A E +++ + L++N++ K + + + L
Sbjct: 64 GALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA--------MSFLA 115
Query: 122 LKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLV 181
K NI+++DPPF G+ E+ LE + L+ E E + +P
Sbjct: 116 QKGTPHNIVFVDPPFRR----GLLEETINLLED--NGWLADETLIYVESEVENGLPTVPA 169
Query: 182 TLAIIKQKKFGKTTLTYFQ 200
++ ++K G+ +Q
Sbjct: 170 NWSLHREKVAGQVAYRLYQ 188
>ref|NP_417922.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P10120|YHHF_ECOLI Putative methylase yhhF
pir||QQECX3 hypothetical 21.7K protein (ftsY-nikA intergenic region) -
Escherichia coli
emb|CAA27983.1| (X04398) ORF 4 (AA 1-198); 20 kD [Escherichia coli]
gb|AAB18440.1| (U00039) CG Site No. 18301 [Escherichia coli]
gb|AAC76490.1| (AE000422) orf, hypothetical protein [Escherichia coli K12]
Length = 198
Score = 79.0 bits (193), Expect = 3e-14
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 2 PNHQPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGS 61
PNH + +IIGG +G L +P+ RPT VRE+ FN L I A ++ F+GS
Sbjct: 4 PNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGS 63
Query: 62 ASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLC 121
++GLEALSR A A E +++ + L++N++ K + + + L
Sbjct: 64 GALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA--------MSFLA 115
Query: 122 LKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLV 181
K NI+++DPPF G+ E+ LE + L+ E E + +P
Sbjct: 116 QKGTPHNIVFVDPPFRR----GLLEETINLLED--NGWLADEALIYVESEVENGLPTVPA 169
Query: 182 TLAIIKQKKFGKTTLTYFQ 200
++ ++K G+ +Q
Sbjct: 170 NWSLHREKVAGQVAYRLYQ 188
>ref|NP_298269.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||B82738 conserved hypothetical protein XF0979 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83789.1|AE003936_3 (AE003936) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 200
Score = 79.0 bits (193), Expect = 3e-14
Identities = 46/126 (36%), Positives = 71/126 (55%), Gaps = 6/126 (4%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+IIGG + L +P + RPT + VRE+ FN L + GAH +++F+GS ++GLEA+S
Sbjct: 10 RIIGGRWRNTRLRVPELPGLRPTASRVRETLFNWLMPVLPGAHVLDLFAGSGALGLEAVS 69
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA AV E++ L E ++ RL + +++ DA + L +II
Sbjct: 70 RGAARAVLVERHAELVVRLREQVA----RLGAQDQVEIVQADALQWLQRPAAVR--FDII 123
Query: 131 YLDPPF 136
+LDPPF
Sbjct: 124 FLDPPF 129
>ref|NP_243456.1| (NC_002570) BH2590~unknown conserved protein [Bacillus halodurans]
dbj|BAB06309.1| (AP001516) BH2590~unknown conserved protein [Bacillus halodurans]
Length = 189
Score = 78.2 bits (191), Expect = 5e-14
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
++I G KGL L TRPT V+E+ FN + +G ++++ GS +G+EALS
Sbjct: 2 RVIAGEQKGLTLKAVPGHKTRPTTDKVKEAIFNMIGPFFDGGIGLDLYGGSGGLGIEALS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG + +F +Q K A +T+ +N+S E + + +DA + L L + V +
Sbjct: 62 RGVERMIFVDQQKRAIETIKQNLS----HCGLEGRAEVYRNDAKRALQVLTKRGIVFAYV 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
+LDPP+ + A LL+ + +VV EH+ +P + K++
Sbjct: 118 FLDPPYAKQTIKN--DLAILANHGLLE----EGGVVVCEHDRDTMLPDQIEYAVKHKEET 171
Query: 191 FGKTTLTYFQ 200
+G T +T ++
Sbjct: 172 YGDTMITIYK 181
>ref|NP_346396.1| (NC_003028) type II DNA modification methyltransferase, putative
[Streptococcus pneumoniae TIGR4]
gb|AAK76036.1| (AE007487) type II DNA modification methyltransferase, putative
[Streptococcus pneumoniae TIGR4]
Length = 179
Score = 77.0 bits (188), Expect = 1e-13
Identities = 51/189 (26%), Positives = 94/189 (48%), Gaps = 13/189 (6%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
KI+ G G L +TRPT VR + FN + +++++GS + +EA+S
Sbjct: 2 KIVSGIYGGRPLKTLEGKTTRPTSDKVRGAIFNMIGPYFEVGRVLDLYAGSGGLSIEAVS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG SAV E+++ A + ENI + K+ + Q DA + L + +G +++
Sbjct: 62 RGMSSAVLVERDRKAQTIVAENIQM----TKEVGKFQLLKMDAERALEQV---SGEFDLV 114
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
+LDPP+ + EK + + ++++VV E + E+P+ + L I K+K
Sbjct: 115 FLDPPYAKEQIVADIEKMAE------RELFSEDVMVVCETDKAVELPEEIACLGIWKEKI 168
Query: 191 FGKTTLTYF 199
+G + +T +
Sbjct: 169 YGISKVTVY 177
>ref|NP_326519.1| (NC_002771) DNA METHYLASE [Mycoplasma pulmonis]
emb|CAC13861.1| (AL445565) DNA METHYLASE [Mycoplasma pulmonis]
Length = 182
Score = 77.0 bits (188), Expect = 1e-13
Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 25/189 (13%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+II G + + +P+ +TRPT +RE+ F+++ EI F+++F+GS + +EA+S
Sbjct: 3 RIIAGKYRHRLIKIPSSKTTRPTIDRMREANFSSIHFEIENKIFLDLFAGSGANPIEAVS 62
Query: 71 RGAKSAVFFEQNKSAYKTLLENISL--FKNRLKKEMEIQTFLDDAFKLLPTLCLKNGV-L 127
RGA ++ E++ A+K L +N+ L +N M+ FL+ K G+ +
Sbjct: 63 RGALKSIAVEKDHEAFKILKQNVQLLGIENMDLYNMDALDFLE----------RKKGIEV 112
Query: 128 NIIYLDPPFETSGFLGIYEKCFQALERLLK-RFNPKNLLVVFEH--ESMHEMPKSLVTLA 184
+ IYLDPPF+ L + LE++ K + KN ++ E E+ ++PK+ V
Sbjct: 113 DFIYLDPPFKDVALLN------ECLEKIAKYKMLEKNGKIIIETLVEANIKIPKNFV--- 163
Query: 185 IIKQKKFGK 193
I+K KK+ +
Sbjct: 164 IVKSKKYNQ 172
>ref|NP_642842.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37378.1| (AE011891) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 207
Score = 77.0 bits (188), Expect = 1e-13
Identities = 42/137 (30%), Positives = 76/137 (54%), Gaps = 6/137 (4%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+I+GG + L +P++ RP+ VRE+ FN L + GA +++F+GS ++GLEA+S
Sbjct: 17 RIVGGRWRNTRLAVPSLPGLRPSSDRVRETVFNWLMPRLPGARVLDLFAGSGALGLEAVS 76
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA A E++ + L E+++ RL ++Q +DA + L + +I+
Sbjct: 77 RGAAHATLIERDPGLVQRLREHVT----RLDAATQVQVLQEDAVRWLER--APAALADIV 130
Query: 131 YLDPPFETSGFLGIYEK 147
++DPPF + + E+
Sbjct: 131 FVDPPFAAGLWPAVLER 147
>ref|NP_389384.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||E69874 conserved hypothetical protein ylbH - Bacillus subtilis
emb|CAB11354.1| (Z98682) YlbH protein [Bacillus subtilis]
emb|CAB13374.1| (Z99111) similar to hypothetical proteins [Bacillus subtilis]
Length = 164
Score = 76.6 bits (187), Expect = 1e-13
Identities = 50/175 (28%), Positives = 91/175 (51%), Gaps = 14/175 (8%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
++I G+ KG L +STRPT V+ES FN + +G +++F+GS +G+EALS
Sbjct: 2 RVISGSKKGRSLKAVAGTSTRPTTDKVKESIFNMIGPYFDGGRGLDLFAGSGGLGIEALS 61
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG + +F +++ A +T+ N+ L+ Q + +DA + L + I
Sbjct: 62 RGFEHCIFVDRDFKAIQTVKSNL----KTLELTKHAQVYRNDAERALHAAAKRETGFRGI 117
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFN--PKNLLVVFEHESMHEMPKSLVTL 183
+LDPP++ E+ +AL L+ + ++ +V EH+ E+P+++ L
Sbjct: 118 FLDPPYK--------EQKLKALLTLIDEYQMLEEDGFIVAEHDREVELPETVEIL 164
>ref|NP_268320.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK06261.1|AE006445_4 (AE006445) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 188
Score = 76.3 bits (186), Expect = 2e-13
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 15/191 (7%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+++ G G L +TRPT V+ + FN + G +++F+GS S+ +EA+S
Sbjct: 11 RVVSGNYGGRPLKTLAGKTTRPTTDKVKGAIFNMIGPYFEGGRVLDLFAGSGSLAIEAIS 70
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG A+ E++++A + +LENI + K+ + Q A ++L L + +++
Sbjct: 71 RGMDHAILVEKDRAAQQVILENIKM----TKEPEKFQLLKMSAERVLSNL---SETFDLV 123
Query: 131 YLDPPFETSGFLGIYEKCFQALERLL-KRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQK 189
LDPP+ E+ + LE L K+ +N++VV E + E+P + L + +QK
Sbjct: 124 LLDPPYAK-------EQIVENLELLQEKKRLTENVIVVCETDKEVELPDQIGKLELTRQK 176
Query: 190 KFGKTTLTYFQ 200
+G + ++ ++
Sbjct: 177 TYGISKISIYE 187
>ref|NP_283001.1| (NC_003116) possible DNA methylase [Neisseria meningitidis Z2491]
pir||E82008 probable DNA methylase NMA0151 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83466.1| (AL162752) possible DNA methylase [Neisseria meningitidis Z2491]
Length = 189
Score = 75.5 bits (184), Expect = 3e-13
Identities = 54/187 (28%), Positives = 94/187 (49%), Gaps = 19/187 (10%)
Query: 9 KFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEA 68
+ +IIGG C+G L+ + RPT VRE FN L ++ G +++F GS ++G+EA
Sbjct: 12 RVRIIGGQCRGRKLSFTSADGLRPTPDSVREKLFNWLGQDLTGKTVLDLFGGSGALGIEA 71
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLN 128
SR AK + + N+ +TL +N +R ++Q D L T+ + +
Sbjct: 72 ASRNAKRVLISDNNRQTAQTLQKN-----SRELGLGQVQIVCSDGIAYLKTV---SEQFD 123
Query: 129 IIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQ 188
+++LDPPF ++ F AL+ L NP++ V E ++ ++P L ++
Sbjct: 124 VVFLDPPFAWQD----WQILFDALKPCL---NPRS-FVYLEAGTLPDIPDWLTE---YRE 172
Query: 189 KKFGKTT 195
K G++T
Sbjct: 173 GKSGQST 179
>ref|NP_407263.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC93283.1| (AJ414159) conserved hypothetical protein [Yersinia pestis]
Length = 220
Score = 75.5 bits (184), Expect = 3e-13
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 5 QPVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASM 64
Q + +IIGG +G L +P+ RPT VRE+ FN L I GA ++ F+GS ++
Sbjct: 18 QSAGQIRIIGGKWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPMIQGARCLDCFAGSGAL 77
Query: 65 GLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKN 124
GLEALSR A E ++ K L +N++L K + + + L L
Sbjct: 78 GLEALSRYASETTLLEADRQVAKQLSDNLTLLKAENGQVVNTNS--------LQWLAQPG 129
Query: 125 GVLNIIYLDPPF 136
N+++LDPPF
Sbjct: 130 QPFNLVFLDPPF 141
>ref|NP_273180.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||G81234 conserved hypothetical protein NMB0122 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40581.1| (AE002371) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 189
Score = 74.7 bits (182), Expect = 6e-13
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 9 KFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEA 68
+ +IIGG C+G L+ + RPT VRE FN L ++ G +++F GS ++G+EA
Sbjct: 12 RVRIIGGQCRGRKLSFTSADGLRPTPDSVREKLFNWLGQDLTGKTVLDLFGGSGALGIEA 71
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLN 128
SR AK + + N+ +TL +N +R ++Q D L T+ + +
Sbjct: 72 ASRNAKRVLISDNNRQTVQTLQKN-----SRELGLGQVQIVFSDGIAYLKTV---SEQFD 123
Query: 129 IIYLDPPF 136
+++LDPPF
Sbjct: 124 VVFLDPPF 131
>ref|NP_212340.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
pir||F70125 conserved hypothetical protein BB0206 - Lyme disease spirochete
gb|AAC66597.1| (AE001131) conserved hypothetical protein [Borrelia burgdorferi]
Length = 189
Score = 74.3 bits (181), Expect = 7e-13
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 27/195 (13%)
Query: 12 IIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSR 71
+ G KG + P S RP ++VRE+FF+ + +I + F++VF+G+ M +EALSR
Sbjct: 14 VSSGKYKGKKILFPKNGSVRPVMSLVREAFFSIIFKDIVNSKFLDVFAGTGIMSVEALSR 73
Query: 72 GAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLL-----PTLCLKNGV 126
GA A E N+ TL+EN S F+++ +K L K+
Sbjct: 74 GASLAHLVECNRKIKITLVENFS--------------FVEEFYKFFFQRAEDFLSKKDLF 119
Query: 127 LNIIYLDPPFETSGFLGIYEKCFQALERLLK-RFNPKNLLVVFEHESMHEMPKSLVTLAI 185
+ IYLDPPF Y+ LE +LK + + ++ + S ++ + ++
Sbjct: 120 YDFIYLDPPFN-------YKNKINLLEIILKGKILNDKVSIIMHYPSNEDLEINTSKFSV 172
Query: 186 IKQKKFGKTTLTYFQ 200
K++G + L + +
Sbjct: 173 YNLKRYGGSKLIFLK 187
>ref|NP_371648.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374241.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645823.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42220.1| (AP003132) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57286.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB94871.1| (AP004825) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 180
Score = 73.6 bits (179), Expect = 1e-12
Identities = 51/176 (28%), Positives = 94/176 (52%), Gaps = 19/176 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
++I G K L +TRPT V+E FN+L +++G +++F+GS ++G+EALS
Sbjct: 2 RVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLY-DVSGIG-LDLFAGSGALGIEALS 59
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RG +F +QN A K + N++ L E + + + ++A + L L ++ ++I
Sbjct: 60 RGMDKVIFVDQNFKAVKVIKSNLA----NLDLEAQSEVYKNNADRALKALSKRDIQFDVI 115
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFN--PKNLLVVFE---HESMHEMPKSLV 181
+LDPP+ G+ +K +L+ FN +N ++V E HE + P +++
Sbjct: 116 FLDPPYNK----GLIDKAL----KLISEFNLLKENGIIVCEFSNHEEIDYQPFNMI 163
>ref|NP_442033.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S76125 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10103.1| (D63999) ORF_ID:slr0383~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 186
Score = 70.9 bits (172), Expect = 8e-12
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 12/171 (7%)
Query: 30 TRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKTL 89
TRPT VR + FN + EI H++++ +G+ ++G EAL R A V EQ+ +
Sbjct: 17 TRPTTGKVRLALFNIWRGEIQHCHWLDLCAGNGTLGAEALCRDADKVVAIEQSAKVCTII 76
Query: 90 LENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFLGIYEKCF 149
EN ++ K + D KLLP+L + IY DPP+ + G+Y
Sbjct: 77 KEN---WQKLAKPGQQWSVLRGDVLKLLPSLA--GQTFDRIYFDPPYGS----GLYNPVL 127
Query: 150 QALERLLKRFNPKNLLVVFEHESMH-EMPKSLVTLAIIKQKKFGKTTLTYF 199
L L+ +P + V E++ H + P+ + L +++QKK+G + L ++
Sbjct: 128 -TLVGELQILSPTGEMAV-EYDRHHWQPPEQIAGLELMRQKKYGLSNLAFY 176
>ref|NP_485410.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73324.1| (AP003585) ORF_ID:all1367~hypothetical protein [Nostoc sp. PCC
7120]
Length = 184
Score = 70.5 bits (171), Expect = 1e-11
Identities = 51/171 (29%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 30 TRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKTL 89
TRPT VRE+ FN Q EI G ++++ +G+ SMG EAL RGA V E++ A +
Sbjct: 19 TRPTTGRVREAVFNIWQGEIEGYRWLDLCAGNGSMGAEALCRGASLVVGIEKSSRACAII 78
Query: 90 LENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFLGIYEKCF 149
EN N E + + D + L L + IY DPP+ + G+Y+
Sbjct: 79 QENWQRIAN---NEQQWRILRGDVVQQLKN--LSGQQFDRIYFDPPYAS----GLYQPVL 129
Query: 150 QALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKKFGKTTLTYFQ 200
+A+ + +P + + EH + + I +QK +G T LT+++
Sbjct: 130 EAIAH-HQLLDPSGEIAI-EHNPQGWVDILIPDWEICRQKVYGNTALTFYR 178
>ref|NP_419046.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22214.1| (AE005697) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 188
Score = 70.1 bits (170), Expect = 1e-11
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ-----AEINGAHFIEVFSGSASMG 65
+I+ G +G + P +TRPT R++ FN L+ E++GA I+VF+GS ++G
Sbjct: 2 RIVSGQFRGKAIAAPPGDATRPTSDRARQAVFNILEHAAWAPELHGARVIDVFAGSGALG 61
Query: 66 LEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNG 125
LEALSRGA +F E + +A + ENI + + + DA L P
Sbjct: 62 LEALSRGASFCLFVETDDAARGAIRENI----DAMHLFGVTRVHRRDATDLGPRPASAGA 117
Query: 126 VLNIIYLDPPF 136
+I++LDPP+
Sbjct: 118 PFDIVFLDPPY 128
>ref|NP_108389.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB53850.1| (AP003013) hypothetical protein [Mesorhizobium loti]
Length = 184
Score = 68.6 bits (166), Expect = 4e-11
Identities = 43/132 (32%), Positives = 68/132 (50%), Gaps = 14/132 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ----AEINGAHFIEVFSGSASMGL 66
+I+GG +G L P S+ RPT RE+ FN L +++GA +++F+G+ ++GL
Sbjct: 2 RIVGGEFRGRPLATPRGSAIRPTTDRTREAVFNVLAHRFAEQLDGARVLDLFAGTGALGL 61
Query: 67 EALSRGAKSAVFFEQNKSAYKTLLENISLF--KNRLKKEMEIQTFLDDAFKLLPTLCLKN 124
EALSRGA VF E++ + +N+ F R K T L +A L P
Sbjct: 62 EALSRGASYGVFIEESAEGRGLIRDNVEAFGLTGRTKIFRRDATGLGEAGTLAP------ 115
Query: 125 GVLNIIYLDPPF 136
+++ DPP+
Sbjct: 116 --FGLVFADPPY 125
>ref|NP_239864.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57136|Y023_BUCAI Putative methylase BU023
dbj|BAB12750.1| (AP001118) hypothetical protein [Buchnera sp. APS]
Length = 191
Score = 67.8 bits (164), Expect = 7e-11
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 9 KFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEA 68
K II G KG ++ NI + RPT +RE+ F L I + ++ F+GS +G+EA
Sbjct: 11 KIYIISGNLKGRKISFKNIPNLRPTTNQIRETLFEWLSKYIKNSRCLDCFAGSGVLGIEA 70
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL-CLKNGVL 127
+SR A + E K + TL +NI KE+ I L L +N
Sbjct: 71 ISRYAAFSTLLEIEKKTFLTLKKNI--------KELNIYNVEIIRTNTLHWLKKTRNKPY 122
Query: 128 NIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHE 171
+II++DPP+ G+ +K LE K++ KN + E E
Sbjct: 123 DIIFIDPPYHQ----GLVKKTINLLEN--KKWIKKNSFIYIEQE 160
>ref|NP_229189.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||E72262 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36458.1|AE001791_20 (AE001791) conserved hypothetical protein [Thermotoga maritima]
Length = 175
Score = 65.9 bits (159), Expect = 3e-10
Identities = 53/190 (27%), Positives = 92/190 (47%), Gaps = 22/190 (11%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+I GG +G L N RPT + VR + FN + +I G F+E+F GS + EALS
Sbjct: 5 RITGGKYRGRKLKTGNFF--RPTMSSVRSALFNMI--DIEGKSFLELFCGSCVVSCEALS 60
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA+ V +++K A +S+ + L+ E T + ++ L +++
Sbjct: 61 RGAERVVCVDRSKRA-------LSICRKNLESLNETATIIHS--NVVDFLQNTGEKFDVV 111
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKK 190
+LDPP+ + I K L +++K ++ L V E E+ S ++K+K
Sbjct: 112 FLDPPYND---VEIINKTLSLLPKVMK----EDSLAVLEKSKRIELDFS--NFEVVKRKD 162
Query: 191 FGKTTLTYFQ 200
+G+T L + +
Sbjct: 163 YGETELVFLK 172
>ref|NP_600548.1| (NC_003450) COG0742:N6-adenine-specific methylase [Corynebacterium
glutamicum]
dbj|BAB98721.1| (AP005278) N6-adenine-specific methylase [Corynebacterium
glutamicum ATCC 13032]
Length = 194
Score = 65.9 bits (159), Expect = 3e-10
Identities = 57/193 (29%), Positives = 87/193 (44%), Gaps = 30/193 (15%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEIN--GAHFIEVFSGSASMGLEA 68
+II G +G + +P + TRPT RE F++LQ G +++F+GS ++GLEA
Sbjct: 5 RIISGDARGRKIEVPP-AGTRPTSDRAREGLFSSLQVRFGFEGQRVLDIFAGSGALGLEA 63
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNR--LKKEMEIQTFLDDAFKLLPTLCLKNGV 126
SRGA V E N A + + N+ + K+ EM+ T+L A +
Sbjct: 64 ASRGADEVVLVESNPKAVEVIRRNVDVVKHPRVTVAEMKASTYLASA---------PDKF 114
Query: 127 LNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNL----LVVFEHESMHE--MPKSL 180
++ DPP YE A+ +L PK L +VV H E P L
Sbjct: 115 FTMVLADPP---------YELADDAVTEMLTALTPKLLDGAAVVVERHVDSPETAWPAWL 165
Query: 181 V-TLAIIKQKKFG 192
V T +K++ +G
Sbjct: 166 VPTTQKLKKRTYG 178
>ref|NP_438926.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44869|YHHF_HAEIN Putative methylase HI0767
pir||F64158 hypothetical protein HI0767 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22425.1| (U32760) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 193
Score = 64.7 bits (156), Expect = 6e-10
Identities = 58/195 (29%), Positives = 92/195 (46%), Gaps = 21/195 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+II G +G L + N RPT V+E+ FN L I+ + ++ F+GS S+G EALS
Sbjct: 14 RIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALS 73
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFK-NRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNI 129
R AK F E +K+ L +N+ K + + E+ Q+ LD F P ++
Sbjct: 74 RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD--FLKQPQ---NQPHFDV 128
Query: 130 IYLDPPFETSGFLGIYEKCFQALERLLK-RFNPKNLLVVFEHESMHEMPKSLVT---LAI 185
++LDPPF + QA+ L + + N L+ E E K L+T +
Sbjct: 129 VFLDPPFH-------FNLAEQAISLLCENNWLKPNALIYVETEK----DKPLITPENWTL 177
Query: 186 IKQKKFGKTTLTYFQ 200
+K+K G + +Q
Sbjct: 178 LKEKTTGIVSYRLYQ 192
>gb|EAA02211.1| (AAAB01003112) ebiP1003 [Anopheles gambiae str. PEST]
Length = 192
Score = 64.3 bits (155), Expect = 8e-10
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 18/185 (9%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+II G +G L + ++ RPT V+E+ FN L + G +++F+GS +GLEALS
Sbjct: 13 RIISGQWRGRKLPVRDVEGLRPTTDRVKETIFNWLAPHVRGTRCLDLFAGSGGLGLEALS 72
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
R A+ E +K A + +N++ + + Q DA L +++
Sbjct: 73 RYAEQVTLIEMDKGAADQIKKNLTTLGS-----SQGQVIQSDAVSWLQGPATP---FDLV 124
Query: 131 YLDPPFETSGFLGIYEKCFQALERLLKR--FNPKNLLVVFEHESMHEMPKSLVTLAIIKQ 188
+LDPPF E Q E L +R P L+ + + M ++P + ++K
Sbjct: 125 FLDPPFRR-------ELLPQVCELLEQRGWLAPDALIYLEREKEMADLPLP-ASWQLLKD 176
Query: 189 KKFGK 193
K+ G+
Sbjct: 177 KQAGQ 181
>ref|NP_249061.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||B83598 conserved hypothetical protein PA0370 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03759.1|AE004475_1 (AE004475) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 198
Score = 63.9 bits (154), Expect = 1e-09
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 9 KFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEA 68
+ +IIGG + P+ RPT VRE+ FN L + GA ++ F+GS ++ LEA
Sbjct: 17 QLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEA 76
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLN 128
LSRGA+ + + N A L ++ K Q L DA + L +
Sbjct: 77 LSRGAREGLALDTNGEAVAALRNHLDALKCG-----TAQLVLGDAVRYLGNQA--PSAFD 129
Query: 129 IIYLDPPF 136
+++LDPPF
Sbjct: 130 LVFLDPPF 137
>ref|NP_353714.1| (NC_003062) AGR_C_1242p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531390.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK86499.1| (AE008003) AGR_C_1242p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41706.1| (AE009037) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 185
Score = 63.5 bits (153), Expect = 1e-09
Identities = 47/135 (34%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ----AEINGAHFIEVFSGSASMGL 66
+I+GG +G L P +S RPT RES FN L ++G ++VF+G+ ++GL
Sbjct: 2 RIVGGEFRGRTLAAPKSNSIRPTIDRTRESLFNILSHAYPESLDGTRVLDVFAGTGAVGL 61
Query: 67 EALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGV 126
EALSRG + A+F E L ENI + L + DA KL GV
Sbjct: 62 EALSRGCRVALFVENGVEGRGLLWENI----DALGLHGRARILRRDATKL-------GGV 110
Query: 127 LNI-----IYLDPPF 136
NI ++ DPP+
Sbjct: 111 NNIEPFDLLFADPPY 125
>ref|NP_229804.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82360 conserved hypothetical protein VC0146 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93323.1| (AE004104) conserved hypothetical protein [Vibrio cholerae]
Length = 199
Score = 63.5 bits (153), Expect = 1e-09
Identities = 43/149 (28%), Positives = 69/149 (45%), Gaps = 12/149 (8%)
Query: 6 PVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMG 65
P + +II G +G L + + RPT V+E+ FN L E+ A +++F+GS +G
Sbjct: 15 PTGQVRIISGLWRGRKLPVHDAEGLRPTTDRVKETLFNWLAQEVPNARCLDLFAGSGGLG 74
Query: 66 LEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNG 125
E SR A E N A++ L N+ K I+ DA L L
Sbjct: 75 FECASRQANQVTMLELNPLAFQQLKTNVQSLKAE-----NIELIHTDA---LAFLRQSGK 126
Query: 126 VLNIIYLDPPFETSGFLGIYEKCFQALER 154
+++++DPPF G+ ++ Q LE+
Sbjct: 127 PYDVVFIDPPFRQ----GLLQETTQLLEQ 151
>ref|NP_542016.1| (NC_003318) METHYLTRANSFERASE [Brucella melitensis]
gb|AAL54280.1| (AE009736) METHYLTRANSFERASE [Brucella melitensis]
Length = 221
Score = 63.2 bits (152), Expect = 2e-09
Identities = 33/87 (37%), Positives = 52/87 (58%), Gaps = 4/87 (4%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQA----EINGAHFIEVFSGSASMGL 66
+I+GG +G L P+ ++ RPT RES FN L ++ G +++F+G+ ++GL
Sbjct: 36 RIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGL 95
Query: 67 EALSRGAKSAVFFEQNKSAYKTLLENI 93
EALSRGA+ A F E++ L +NI
Sbjct: 96 EALSRGARYATFVEESADGRGILRQNI 122
>ref|NP_218505.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
pir||A71371 conserved hypothetical protein TP0065 - syphilis spirochete
gb|AAC65059.1| (AE001191) conserved hypothetical protein [Treponema pallidum]
Length = 195
Score = 62.8 bits (151), Expect = 2e-09
Identities = 48/172 (27%), Positives = 84/172 (47%), Gaps = 20/172 (11%)
Query: 31 RPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKTLL 90
RP +RES F L ++ G F+++F+GS GLEA SRGA VF E N ++ LL
Sbjct: 15 RPAMDRMRESLFAIL-GDMRGCSFLDLFAGSGVCGLEAYSRGAYPVVFVEWNVRSFSVLL 73
Query: 91 ENISLFKNRLK-KEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFLGIYEKCF 149
+N+ + RL+ + M ++ ++ A L + +YLDPPF Y
Sbjct: 74 QNVQVALCRLECRCMAVERYIARARTL----------FHFVYLDPPFP-------YRFHA 116
Query: 150 QALERLLKRFNPKNLLVVFEHESMH-EMPKSLVTLAIIKQKKFGKTTLTYFQ 200
+ L+RL + + VV H ++ + +L Q+ +G++ + +++
Sbjct: 117 ELLQRLSRASLCREGSVVMVHRPREKKLADKIDSLVRTDQRVYGRSVVDFYR 168
>ref|NP_384908.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC45374.1| (AL591785) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 186
Score = 62.4 bits (150), Expect = 3e-09
Identities = 45/148 (30%), Positives = 70/148 (46%), Gaps = 14/148 (9%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQ----AEINGAHFIEVFSGSASMGL 66
+I+GG +G L P RPT RES FN L ++G +++F+G+ ++GL
Sbjct: 2 RIVGGEFRGRTLAAPKSDDIRPTTDRARESLFNILSHAYPEALDGTRVLDLFAGTGAIGL 61
Query: 67 EALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGV 126
EALSRG + +F EQ L NI L + + F DA L P ++
Sbjct: 62 EALSRGCRQVLFVEQGVEGRGLLRINI----EALGLQGRAKIFRRDATDLGPVGTME--P 115
Query: 127 LNIIYLDPPFETSGFLGIYEKCFQALER 154
++++ DPP+ G+ E+ A R
Sbjct: 116 FHLVFADPPYGK----GLGERALSAAAR 139
>pir||T44702 hypothetical protein MLCB1243.09 [imported] - Mycobacterium leprae
emb|CAA19190.1| (AL023635) hypothetical protein MLCB1243.09 [Mycobacterium leprae]
Length = 220
Score = 62.4 bits (150), Expect = 3e-09
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTL--QAEINGAHFIEVFSGSASMGLEA 68
+IIGG +G + +P + RPT VRES FN + Q E+ G +++++GS ++GLEA
Sbjct: 39 RIIGGVARGRRIVVPQWGA-RPTTDRVRESLFNIVAAQRELTGLAVLDLYAGSGALGLEA 97
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENIS 94
LSRGA S +F E +K + N++
Sbjct: 98 LSRGAASTLFVESDKRTVAVIERNVT 123
>ref|NP_217482.1| (NC_000962) hypothetical protein Rv2966c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337556.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
pir||C70671 hypothetical protein Rv2966c - Mycobacterium tuberculosis
(strain H37RV)
emb|CAB05411.1| (Z83018) hypothetical protein Rv2966c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47370.1| (AE007125) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 188
Score = 60.8 bits (146), Expect = 8e-09
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFN--TLQAEINGAHFIEVFSGSASMGLEA 68
+IIGG G + +P TRPT VRES FN T + ++ G +++++GS ++GLEA
Sbjct: 3 RIIGGVAGGRRIAVPP-RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEA 61
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENI 93
LSRGA S +F E ++ + + NI
Sbjct: 62 LSRGAASVLFVESDQRSAAVIARNI 86
>gb|AAG30412.1|AF262949_3 (AF262949) hypothetical methyltransferase [Mycobacterium
smegmatis]
Length = 80
Score = 59.7 bits (143), Expect = 2e-08
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEIN--GAHFIEVFSGSASMGLEA 68
+II G G + +P S TRPT VRE+ FN L A ++ G +++++GS ++GLEA
Sbjct: 3 RIIAGFLGGRRIEVPK-SGTRPTSDRVREAVFNALAARLDFAGLAVLDLYAGSGALGLEA 61
Query: 69 LSRGAKSAVFFEQNKSA 85
+SRGA SA+F E ++ A
Sbjct: 62 ISRGASSALFVESDQRA 78
>ref|NP_246455.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03600.1| (AE006188) unknown [Pasteurella multocida]
Length = 200
Score = 59.3 bits (142), Expect = 2e-08
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 6 PVKKFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMG 65
P + +II G +G L + + RPT V+E+ FN L I A ++ F+GS ++G
Sbjct: 13 PKGEVRIIAGLWRGRKLPVLSADGLRPTGDRVKETLFNWLMPYIVDATCLDCFAGSGALG 72
Query: 66 LEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQ----TFLDDAFKLLPTLC 121
EALSR AK F E +K+ L +N++ K ++ I FL+ + P
Sbjct: 73 FEALSRQAKQVTFLELDKNVATQLSKNLATLKCNAEQANVINQNSLQFLNQP-QTAPH-- 129
Query: 122 LKNGVLNIIYLDPPF 136
+I+++DPPF
Sbjct: 130 -----FDIVFIDPPF 139
>ref|NP_518510.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD13917.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 215
Score = 59.3 bits (142), Expect = 2e-08
Identities = 44/159 (27%), Positives = 75/159 (46%), Gaps = 9/159 (5%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEALS 70
+IIGG K L + + RPT VRE+ FN L ++ G ++F+G+ ++G EA S
Sbjct: 25 RIIGGQYKRTPLPVIDAEGLRPTGDRVRETLFNWLGQDLAGWRCADLFAGTGALGFEAAS 84
Query: 71 RGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNII 130
RGA E + A + L +++L+ M + D F L +G +++
Sbjct: 85 RGAARVTLVESHAPALRAL----HAVRDKLRAGM-VDIVAGDVFAWLARQA--DGAFDLV 137
Query: 131 YLDPPFETSGFLGIYEKCFQALER--LLKRFNPKNLLVV 167
++DPPF L E + + L+ +P+ L+ V
Sbjct: 138 FIDPPFAQDWTLRALEAALRVVPEGGLIYVESPRPLVAV 176
>ref|NP_294366.1| (NC_001263) N-6 adenine-specific DNA restriction methylase,
putative [Deinococcus radiodurans]
pir||H75492 probable N-6 adenine-specific DNA restriction methylase -
Deinococcus radiodurans (strain R1)
gb|AAF10222.1|AE001922_2 (AE001922) N-6 adenine-specific DNA restriction methylase, putative
[Deinococcus radiodurans]
Length = 186
Score = 58.9 bits (141), Expect = 3e-08
Identities = 40/130 (30%), Positives = 67/130 (50%), Gaps = 16/130 (12%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGA---HFIEVFSGSASMGLE 67
+I+GG KG L +P S RP+ A +R+S F+ L A HF+++ GS ++GLE
Sbjct: 7 RILGGVAKGRELRVPE--SARPSGARIRKSLFDLLAARAPAGRFPHFVDLHGGSGAIGLE 64
Query: 68 ALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVL 127
A SRG + + + +++ +L +N + + F DA LP + G
Sbjct: 65 AASRGYRVTLIEKDSRAVG-------ALERNARGLGLNARVFKGDALGQLP----RAGQA 113
Query: 128 NIIYLDPPFE 137
+II+ DPP++
Sbjct: 114 DIIFSDPPYQ 123
>ref|NP_661857.1| (NC_002932) methylase, putative [Chlorobium tepidum TLS]
gb|AAM72199.1| (AE012861) methylase, putative [Chlorobium tepidum TLS]
Length = 184
Score = 58.5 bits (140), Expect = 4e-08
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 24/174 (13%)
Query: 31 RPTKAIVRESFFNTLQAEIN--GAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKT 88
RP + V++S F+TL A ++ +++F+G ++G EALSRGAKSA F EQN+ A +T
Sbjct: 22 RPCTSRVKKSLFDTLAARLDFDDIEVLDLFAGFGNLGFEALSRGAKSACFVEQNRQALET 81
Query: 89 L---LENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFETSGFLGIY 145
+ +I + ++ FL + G ++++ DPP+ Y
Sbjct: 82 MKATAVDIGAGASARFVMADVTAFLK----------REEGSFDLVFCDPPYRWED----Y 127
Query: 146 EKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSLVTLAIIKQKKFGKTTLTYF 199
E +++ L + L++ EH + H+ +S + K +G T +++F
Sbjct: 128 EYLIRSI--LDTGLLAPDGLLLMEHHASHDFSQS---RGYLFHKDYGTTRVSFF 176
>pir||S54842 hypothetical protein 21.7K in ftsY 5' region - Pseudomonas
aeruginosa (fragment)
emb|CAA58869.1| (X84051) hypothetical 21.7 kDa protein in ftsY 5' region
[Pseudomonas aeruginosa]
Length = 110
Score = 57.8 bits (138), Expect = 7e-08
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 9 KFKIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQAEINGAHFIEVFSGSASMGLEA 68
+ +IIGG + P+ RPT VRE+ FN L + GA ++ F+GS ++ LEA
Sbjct: 17 QLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEA 76
Query: 69 LSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKK 102
LSRGA+ + + N A L ++ K K
Sbjct: 77 LSRGAREGLALDTNGEAVAALRNHLDALKTGTAK 110
>ref|NP_629702.1| (NC_003888) putative DNA methylase [Streptomyces coelicolor
A3(2)]
pir||T35651 probable methylase - Streptomyces coelicolor
emb|CAA22410.1| (AL034447) putative DNA methylase [Streptomyces coelicolor A3(2)]
Length = 195
Score = 55.5 bits (132), Expect = 4e-07
Identities = 30/87 (34%), Positives = 50/87 (56%), Gaps = 4/87 (4%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQA----EINGAHFIEVFSGSASMGL 66
++I G G L +P + TRPT RE F+T Q+ ++G +++++GS ++GL
Sbjct: 3 RVIAGKAGGRRLAVPPGTGTRPTSDRAREGLFSTWQSLLGGPLDGERVLDLYAGSGAVGL 62
Query: 67 EALSRGAKSAVFFEQNKSAYKTLLENI 93
EALSRGA + E + A +T+ N+
Sbjct: 63 EALSRGAGHVLLVEADARAARTVRANV 89
>pir||S73056 u0002d protein - Mycobacterium tuberculosis
gb|AAA50947.1| (U00024) u0002d [Mycobacterium tuberculosis]
Length = 215
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/66 (42%), Positives = 43/66 (64%), Gaps = 2/66 (3%)
Query: 30 TRPTKAIVRESFFN--TLQAEINGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYK 87
TRPT VRES FN T + ++ G +++++GS ++GLEALSRGA S +F E ++ +
Sbjct: 48 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAA 107
Query: 88 TLLENI 93
+ NI
Sbjct: 108 VIARNI 113
>dbj|BAB02862.1| (AB026644) gb|AAC66597.1~gene_id:MFJ20.15~similar to unknown
protein [Arabidopsis thaliana]
gb|AAL67056.1| (AY074360) unknown protein [Arabidopsis thaliana]
Length = 314
Score = 52.4 bits (124), Expect = 3e-06
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQA------EINGAHFIEVFSGSASM 64
+++ G K L RP +V+ + F LQA + +++++SG+ S+
Sbjct: 115 QVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSV 174
Query: 65 GLEALSRGAKSAVFFEQN----KSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
G+EA+SRG A F E + + + LE+ + ++ FL+ A KL+
Sbjct: 175 GIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKLVG-- 232
Query: 121 CLKNGVLNIIYLDPPFETSGFLGIYEKCFQALERLLKRFNPKNLLVVFEHESMHEMPKSL 180
K+GV + I + PP+ YE + + +N ++ E+ S M S
Sbjct: 233 --KDGVFDYISVTPPYMEVD----YEVLMDQIAK--SPAIGENTFILVEYPSRTTMLDSC 284
Query: 181 VTLAIIKQKKFGKTTLTYF 199
L + ++FG+T L +
Sbjct: 285 GCLEKMTDRRFGRTHLAIY 303
>ref|NP_302144.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30617.1| (AL583923) conserved hypothetical protein [Mycobacterium leprae]
Length = 157
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 37 VRESFFNTL--QAEINGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKTLLENIS 94
+RES FN + Q E+ G +++++GS ++GLEALSRGA S +F E +K + N++
Sbjct: 1 MRESLFNIVAAQRELTGLAVLDLYAGSGALGLEALSRGAASTLFVESDKRTVAVIERNVT 60
>ref|NP_189487.1| (NM_113766) unknown protein [Arabidopsis thaliana]
Length = 307
Score = 48.5 bits (114), Expect = 4e-05
Identities = 35/136 (25%), Positives = 64/136 (46%), Gaps = 14/136 (10%)
Query: 11 KIIGGACKGLGLNLPNISSTRPTKAIVRESFFNTLQA------EINGAHFIEVFSGSASM 64
+++ G K L RP +V+ + F LQA + +++++SG+ S+
Sbjct: 112 QVLAGTAKRKKLLSLKGMDVRPMMEVVKGAAFGILQAAGGCPTSLRPGRWLDLYSGTGSV 171
Query: 65 GLEALSRGAKSAVFFEQN----KSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTL 120
G+EA+SRG A F E + + + LE+ + ++ FL+ A KL+
Sbjct: 172 GIEAISRGCSEAHFVEMDPWVVSNVLQPNLEHTGFVDASVIHTARVENFLERADKLVG-- 229
Query: 121 CLKNGVLNIIYLDPPF 136
K+GV + I + PP+
Sbjct: 230 --KDGVFDYISVTPPY 243
>ref|NP_603930.1| (NC_003454) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95229.1| (AE010610) Methyltransferase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 393
Score = 48.1 bits (113), Expect = 6e-05
Identities = 34/114 (29%), Positives = 51/114 (43%), Gaps = 14/114 (12%)
Query: 50 NGAHFIEVFSGSASMGLEALSRGAKSAVFFEQNKSAYKTLLENISLFKNRLKKEMEIQTF 109
N F++VFS S + AL GAK + +++ A + EN L + + T
Sbjct: 216 NQTRFLDVFSSSGGFSMSALKNGAKEVIAMDKDSHALELCHENYKL----NEFTADFSTI 271
Query: 110 LDDAFKLLPTLCLKNGVLNIIYLDPPF----------ETSGFLGIYEKCFQALE 153
DAF +L +L +N +II LDPP FL + +K F+ LE
Sbjct: 272 EGDAFLMLNSLATRNKKFDIITLDPPSLIKKKTEIYKGRDFFLDLCDKSFKLLE 325
>ref|NP_196664.1| (NM_121141) putative protein [Arabidopsis thaliana]
pir||T51792 hypothetical protein T5K6_20 - Arabidopsis thaliana
emb|CAC03451.1| (AL391222) putative protein [Arabidopsis thaliana]
Length = 655
Score = 42.0 bits (97), Expect = 0.004
Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 4/94 (4%)
Query: 78 FFEQNKSAYKTLLENISLFKNRLKKEMEIQTFLDDAFKLLPTLCLKNGVLNIIYLDPPFE 137
F + S +L EN++L N + I+ LD+ K+L + + V++ + P
Sbjct: 94 FVTELVSCLDSLYENVALDANNELENDVIEEVLDEILKVLSSPQMDQDVIDALSFHLPKV 153
Query: 138 TSGFLGIYEKCFQALERLLKRF----NPKNLLVV 167
TS F I +C Q +E ++ RF NP+++L +
Sbjct: 154 TSKFADISSRCLQLVEEIVDRFVEACNPRDMLSI 187
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,178,661
Number of Sequences: 1026957
Number of extensions: 4442656
Number of successful extensions: 10896
Number of sequences better than 1.0e-02: 63
Number of HSP's better than 0.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10786
Number of HSP's gapped (non-prelim): 63
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)