BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645430|ref|NP_207604.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207604.1| (NC_000915) hypothetical protein [Helicoba... 219 6e-57
ref|NP_223465.1| (NC_000921) putative [Helicobacter pylori ... 215 9e-56
ref|NP_282600.1| (NC_002163) hypothetical protein Cj1460 [C... 64 4e-10
>ref|NP_207604.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64621 hypothetical protein HP0811 - Helicobacter pylori (strain 26695)
gb|AAD07861.1| (AE000592) H. pylori predicted coding region HP0811 [Helicobacter
pylori 26695]
Length = 108
Score = 219 bits (557), Expect = 6e-57
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ
Sbjct: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
Query: 61 SVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
SVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
Sbjct: 61 SVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
>ref|NP_223465.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71895 hypothetical protein jhp0747 - Helicobacter pylori (strain J99)
gb|AAD06319.1| (AE001505) putative [Helicobacter pylori J99]
Length = 108
Score = 215 bits (547), Expect = 9e-56
Identities = 106/108 (98%), Positives = 107/108 (98%)
Query: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
MKIFLSCKSLLIQRSLEFYLSDCLSP+EVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ
Sbjct: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPVEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQ 60
Query: 61 SVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
SVKEDIKNFYRALK SEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
Sbjct: 61 SVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ 108
>ref|NP_282600.1| (NC_002163) hypothetical protein Cj1460 [Campylobacter jejuni]
pir||C81292 hypothetical protein Cj1460 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73883.1| (AL139078) hypothetical protein Cj1460 [Campylobacter jejuni]
Length = 127
Score = 63.5 bits (153), Expect = 4e-10
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Query: 1 MKIFLSCKSLLIQRSLEFYLSDCLSPMEVCDLVLSDDEKLETNKPLCFIEER---LRKPF 57
MKI L CK L+I+++LE +L D L + CD ++S DEK+ T KPL I + L PF
Sbjct: 1 MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIIS-DEKIHTAKPLFIISKNSPFLSIPF 59
Query: 58 TKQSVKEDIKNFYRALKTSEKPCEEIQFSKEQKIKQLLEE 97
+K+++ E + F ALK + +Q + EQ K+LLEE
Sbjct: 60 SKETLFESLNEFDNALKAA-----ALQLALEQ--KRLLEE 92
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,840,215
Number of Sequences: 1026957
Number of extensions: 2263424
Number of successful extensions: 8176
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8172
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 324,149,939
effective HSP length: 84
effective length of query: 24
effective length of database: 237,885,551
effective search space: 5709253224
effective search space used: 5709253224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)