BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645431|ref|NP_207605.1| hypothetical protein
[Helicobacter pylori 26695]
(336 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207605.1| (NC_000915) hypothetical protein [Helicoba... 676 0.0
ref|NP_223466.1| (NC_000921) putative [Helicobacter pylori ... 626 e-179
ref|NP_282383.1| (NC_002163) hypothetical protein Cj1236 [C... 149 4e-35
ref|NP_658291.1| (NC_003995) DUF185, Uncharacterized ACR, C... 84 2e-15
ref|NP_213433.1| (NC_000918) hypothetical protein [Aquifex ... 65 1e-09
ref|NP_284774.1| (NC_003116) conserved hypothetical protein... 58 2e-07
ref|NP_273458.1| (NC_003112) conserved hypothetical protein... 57 2e-07
ref|NP_103963.1| (NC_002678) hypothetical protein [Mesorhiz... 56 7e-07
ref|NP_298747.1| (NC_002488) conserved hypothetical protein... 55 9e-07
ref|NP_650054.1| (NM_141797) CG17726 gene product [Drosophi... 54 3e-06
gb|AAF54614.1| (AE003690) CG17726 gene product [Drosophila ... 54 3e-06
ref|NP_653337.1| (NM_144736) hypothetical protein PRO1853, ... 54 3e-06
ref|NP_638777.1| (NC_003902) conserved hypothetical protein... 52 1e-05
gb|AAM29473.1| (AY113468) RE41779p [Drosophila melanogaster] 52 1e-05
ref|NP_641041.1| (NC_003919) conserved hypothetical protein... 51 2e-05
ref|NP_189511.1| (NM_113790) unknown protein [Arabidopsis t... 46 7e-04
ref|NP_355171.1| (NC_003062) AGR_C_4024p [Agrobacterium tum... 45 0.001
dbj|BAB89024.1| (AP003243) hypothetical protein~similar to ... 44 0.002
ref|NP_220439.1| (NC_000963) unknown [Rickettsia prowazekii... 44 0.002
ref|NP_442092.1| (NC_000911) unknown protein [Synechocystis... 44 0.003
ref|NP_627598.1| (NC_003888) hypothetical protein [Streptom... 44 0.003
>ref|NP_207605.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64621 hypothetical protein HP0812 - Helicobacter pylori (strain 26695)
gb|AAD07871.1| (AE000593) H. pylori predicted coding region HP0812 [Helicobacter
pylori 26695]
Length = 336
Score = 676 bits (1745), Expect = 0.0
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MRSFGNYMQEWLYGEKGYYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
MRSFGNYMQEWLYGEKGYYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP
Sbjct: 1 MRSFGNYMQEWLYGEKGYYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM
Sbjct: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
Query: 121 ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDEPTKELLKN 180
ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDEPTKELLKN
Sbjct: 121 ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDEPTKELLKN 180
Query: 181 LDLKQGCAPLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKD 240
LDLKQGCAPLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKD
Sbjct: 181 LDLKQGCAPLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKD 240
Query: 241 ILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSV 300
ILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSV
Sbjct: 241 ILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSV 300
Query: 301 GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM 336
GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM
Sbjct: 301 GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM 336
>ref|NP_223466.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71891 hypothetical protein jhp0748 - Helicobacter pylori (strain J99)
gb|AAD06339.1| (AE001506) putative [Helicobacter pylori J99]
Length = 336
Score = 626 bits (1615), Expect = e-179
Identities = 308/336 (91%), Positives = 325/336 (96%)
Query: 1 MRSFGNYMQEWLYGEKGYYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
MRSFGNYMQEWLYGEKGYYRKALIG KGDFYTSVS+SKFFGGA+AFYII+LLEEEKLFLP
Sbjct: 1 MRSFGNYMQEWLYGEKGYYRKALIGPKGDFYTSVSLSKFFGGAIAFYIIRLLEEEKLFLP 60
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
LKIVEIGSHHGHFLSDIASFLNALSVGVME+C FVSCEPLKELQ +QRTIFKQATQLDL+
Sbjct: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEKCEFVSCEPLKELQNIQRTIFKQATQLDLI 120
Query: 121 ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDEPTKELLKN 180
C L++LDFK ++AFVVSNELFDAFACEI+KDN+MLFI HDH+GVWG IDEPTKELLKN
Sbjct: 121 SCALEELDFKEKKSAFVVSNELFDAFACEIIKDNQMLFITHDHQGVWGGIDEPTKELLKN 180
Query: 181 LDLKQGCAPLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKD 240
L+LK+GCAPLFLEAFIK+LLEKLNEASSWVFLSFDYGDE ERKDMHLRAFKNHQALDFKD
Sbjct: 181 LNLKEGCAPLFLEAFIKNLLEKLNEASSWVFLSFDYGDELERKDMHLRAFKNHQALDFKD 240
Query: 241 ILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSV 300
ILN+LASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLM LLETFSKSV
Sbjct: 241 ILNHLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMELLETFSKSV 300
Query: 301 GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM 336
GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM
Sbjct: 301 GYERYLKEAAKIKPLISPGGLGERFKALEFVKKNKM 336
>ref|NP_282383.1| (NC_002163) hypothetical protein Cj1236 [Campylobacter jejuni]
pir||F81330 hypothetical protein Cj1236 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73490.1| (AL139077) hypothetical protein Cj1236 [Campylobacter jejuni]
Length = 316
Score = 149 bits (376), Expect = 4e-35
Identities = 108/332 (32%), Positives = 177/332 (52%), Gaps = 22/332 (6%)
Query: 4 FGNYMQEWLYGEKGYYRKAL-IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLK 62
F ++ WL+ + YY+ A+ IG+ GDF+T+VSV FG +A + + L++E+ L PL+
Sbjct: 3 FSDFFHAWLH--ESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAKHFLNLIDEKILKPPLE 60
Query: 63 IVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK--QATQLDLM 120
+VEIG++ G+ D + L L + Q +F EP ++L+ LQ+ + + T +
Sbjct: 61 LVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLRTLQKKTLEGVEFTHKN-- 118
Query: 121 ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDEPTKELLKN 180
LK+ FK NAF NELFD+F CE++ +KM F+ + K ++ +DE K
Sbjct: 119 --SLKECHFK---NAFFFCNELFDSFTCELIDHDKMAFV-ENFKLIFKNMDENLITKCKA 172
Query: 181 LDLKQGCAPLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKD 240
L+L +G L LE F KDL + ++F FDYG + LR ++ H+ F
Sbjct: 173 LNLTKGELSLELENFFKDLNQ---TCERFIFAGFDYG-TLNPQSFSLRIYQKHEV--FSP 226
Query: 241 ILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETFSKSV 300
+L + +SDLTY+VNF+ ++ L +++ + FK Q+ A +D G LLE ++K+
Sbjct: 227 FEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFEDLLE-YAKNK 285
Query: 301 GYERYLKEAAKIKPLISPGGLGERFKALEFVK 332
+ Y ++ K L E+F EF K
Sbjct: 286 NIKTYESFLSQAKILFF--NFDEKFHFFEFQK 315
>ref|NP_658291.1| (NC_003995) DUF185, Uncharacterized ACR, COG1565 [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 368
Score = 84.3 bits (207), Expect = 2e-15
Identities = 92/360 (25%), Positives = 156/360 (42%), Gaps = 52/360 (14%)
Query: 3 SFGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFL 59
S+ YM+ LY E+ GYY K IG++GDF+TS +VS F A + ++L+E + +
Sbjct: 18 SYSTYMKLALYAEEHGYYMKEREKIGRQGDFFTSSNVSSAFAKTFAKFFVRLVENGE--V 75
Query: 60 PLKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDL 119
I EIG G F D+ LS + E +KLQ+
Sbjct: 76 APNICEIGGGTGRFAYDVLQEWKQLSPETFINLNYSMIEMSPFHRKLQQK---------- 125
Query: 120 MICDLKDLD-FKGHE------NAFVVSNELFDAFACEIV-KDNKMLF---IAHDHKGVWG 168
+C ++ + H + SNELFDAF E++ K N +L+ + + +G
Sbjct: 126 SLCSFSNVSYYTSHSEMGESFEGILFSNELFDAFPVEVIEKRNGILYEVRVTYTEEGKLA 185
Query: 169 AIDEPT-----KELLK-NLDLKQGC---APLFLEAFIKDLLEKLNEASSWVFLSFDYGDE 219
+ P + LLK N+ L +G P+ +E FIK++ + V ++ DYG
Sbjct: 186 EVCRPLHKRIGRYLLKYNIHLAEGQRFEVPIAMEEFIKEIAKWFQRG---VCITVDYG-Y 241
Query: 220 TERKDMH-------LRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHA 272
T+ + MH LR + H+ ++ N + + DLT +++ ++ +F
Sbjct: 242 TKEEWMHPAHQEGSLRGYYEHK------LIRNPLAHPGEMDLTTHIHWDELKEMFSLQGM 295
Query: 273 QFSFFKTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFVK 332
+ K Q+ LL G++ L + K+ ++ +I GGLG F + K
Sbjct: 296 NTVWHKKQSEFLLAAGILDQLTNHQDRNPFSETQKQNRAVRSMILNGGLGNAFDVVIHTK 355
>ref|NP_213433.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||E70355 conserved hypothetical protein aq_622 - Aquifex aeolicus
gb|AAC06834.1| (AE000698) hypothetical protein [Aquifex aeolicus]
Length = 320
Score = 65.1 bits (157), Expect = 1e-09
Identities = 83/336 (24%), Positives = 157/336 (46%), Gaps = 37/336 (11%)
Query: 3 SFGNYMQEWLYGEKGYY--RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
SF ++M++ + K YY ++AL DF+T+ + + FG A+A + + L E F
Sbjct: 5 SFRDFMEKAV---KDYYSSQRAL----KDFFTAPELDRAFGEALAEFFSQHLSE---FER 54
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
+VE+G+ G DI ++ A + + + E L QR + K ++
Sbjct: 55 PALVELGAGRGLLAYDILNYYRANYPDLFNRLKYYIYEFSPYLISKQREVLKNFKNVE-W 113
Query: 121 ICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAID-EPTKELLK 179
+ +L ++ V SNE FDA IVK K L++ VW +++ E KE L+
Sbjct: 114 VEELPKVE------GIVFSNEFFDALPVHIVKGGKELYVDEKGSEVWLSLENEKVKEFLR 167
Query: 180 NLDLKQGCAPLFLEAFIKDLLEKLNEA--SSWVFLSFDYG----DETERKDMHLRAFKNH 233
++ + + + D+L+K++E+ + F+ DYG + T+ + + A+K H
Sbjct: 168 RMNYENLNQIVEVCLDCIDMLKKISESLVEGYHFV-IDYGYTSEEITKYPEGTVVAYKEH 226
Query: 234 QALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDM-GLMGL 292
+ + KD L + +D+T VNFS + + F++Q + L+ + +
Sbjct: 227 KVV--KDFLKEAGN----ADITAHVNFSALMEYGRDFGLETILFQSQRDFLMHIPTFLNE 280
Query: 293 LETFSKSVGYERYLKEAAKIKPLISPGGLGERFKAL 328
LE S E ++ +++K ++ +G+RFK L
Sbjct: 281 LEKLSWEESAES-VERLSRLKTMLI--SMGDRFKVL 313
>ref|NP_284774.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||F81778 conserved hypothetical protein NMA2076 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB85293.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 405
Score = 57.8 bits (138), Expect = 2e-07
Identities = 92/358 (25%), Positives = 151/358 (41%), Gaps = 56/358 (15%)
Query: 4 FGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
F +M+ LY + GYY IG GDF T+ +++ F +A + +LL +
Sbjct: 57 FSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQLQELLSQTAG--- 113
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK----QATQ 116
I E G+ G +D+ L ++S G+ + E EL Q+ + + +A+Q
Sbjct: 114 -NIYEFGAGTGQLAADL---LGSISDGISR---YYIIEISPELAARQKNLIQARAPEASQ 166
Query: 117 LDLMICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDE---- 172
+ + L + F G ++ NE+ DA EIV+ N+ + +H GV D
Sbjct: 167 KVVHLTALPEA-FDG----IIIGNEVLDAMPVEIVRKNEGG--SFEHVGVCLDNDRFTYS 219
Query: 173 --PTKEL----LKNLDLKQGCAPLFLE------AFIKDLLEKLNEASSWVFLSFDYGDET 220
P +L L +L Q P E AFI+ L +L E +F+ DYG +
Sbjct: 220 ARPLHDLQLSALASLYFPQTDYPYTSELHPQQYAFIRTLASRL-ERGGMIFI--DYGFDA 276
Query: 221 ------ERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQF 274
+R L H +++N +DLT VNF+ +
Sbjct: 277 AQYYHPQRNQGTLIGHYRHH------VIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDL 330
Query: 275 SFFKTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFVK 332
+ Q++ LL++G+ LL K+ Y+ EAA ++ LI +GE FK + F K
Sbjct: 331 IGYLPQSHFLLNLGITELLAQTGKTDS-AAYICEAAAVQKLIDQHEMGELFKVIAFGK 387
>ref|NP_273458.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||F81201 conserved hypothetical protein NMB0409 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40848.1| (AE002397) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 403
Score = 57.4 bits (137), Expect = 2e-07
Identities = 93/358 (25%), Positives = 151/358 (41%), Gaps = 56/358 (15%)
Query: 4 FGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
F +M+ LY + GYY IG GDF T+ +++ F +A + +LL +
Sbjct: 55 FSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLARQLQELLSQTAG--- 111
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK----QATQ 116
I E G+ G +D+ L ++S G+ + E EL Q+ + + +A+Q
Sbjct: 112 -NIYEFGAGTGQLAADL---LGSISDGISR---YYIIEISPELAARQKNLIQARAPEASQ 164
Query: 117 LDLMICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKGVWGAIDE---- 172
+ + L + F G ++ NE+ DA EIV+ N+ + +H GV D
Sbjct: 165 KVVHLTALPEA-FDG----IIIGNEVLDAMPVEIVRKNEGG--SFEHVGVCLDNDRFTYS 217
Query: 173 --PTKEL----LKNLDLKQGCAPLFLE------AFIKDLLEKLNEASSWVFLSFDYGDET 220
P +L L +L Q P E AFI+ L +L E +F+ DYG +
Sbjct: 218 ARPLHDLQLSALASLYFPQTDYPYTSELHPQQYAFIRTLASRL-EHGCMIFI--DYGFDA 274
Query: 221 ------ERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQF 274
+R L H I++N +DLT VNF+ +
Sbjct: 275 AQYYHPQRNQGTLIGHYRHH------IIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDL 328
Query: 275 SFFKTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFVK 332
+ Q++ LL++G+ LL K+ Y+ EAA ++ LI +GE FK + F K
Sbjct: 329 IGYLPQSHFLLNLGITELLAQTGKTDS-AAYICEAAAVQKLIDQHEMGELFKVIAFGK 385
>ref|NP_103963.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB49749.1| (AP003000) hypothetical protein [Mesorhizobium loti]
Length = 362
Score = 55.8 bits (133), Expect = 7e-07
Identities = 85/332 (25%), Positives = 128/332 (37%), Gaps = 39/332 (11%)
Query: 17 GYYR-KALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIVEIGSHHGHFLS 75
GYY + G GDF T+ +S+ FG VA ++ + +P+ I EIG G +
Sbjct: 34 GYYTTREPFGAAGDFVTAPEISQMFGELVAVWLYQAWAAIARPMPVTIAEIGPGRGTLMK 93
Query: 76 DIASFLNALSVGVMEQCAFVSCEP---LKELQKLQRTIFKQATQLDLMICDLKDLDFKGH 132
D+ L+ L + F E L E+QK A + I L D
Sbjct: 94 DMLRTLSRLDPALANGAVFAMIETSPRLAEIQKQTLGATPFAVRWHETIETLPD------ 147
Query: 133 ENAFVVSNELFDAFAC-EIVKDN---KMLFIAHDHKGVW------GAIDEPTKELLKNLD 182
+ +V NELFDA + V+ + ++ D K G+ID PT L +
Sbjct: 148 QPLLIVGNELFDAVPIRQFVRTATGWRERMVSLDDKDELRFFAGAGSID-PTLLPLDAAE 206
Query: 183 LKQGC------APLFLEAFIKDLLEKLNEASSWVFLSFDYGDETERKDMHLRAFKNHQAL 236
QG A L A I + + A L DYG L+A + H
Sbjct: 207 APQGAIVEVAPARAALMAAIAGRMARNGGAG----LFLDYGHLQPGVGDTLQALRRH--- 259
Query: 237 DFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKTQANALLDMGLMGLLETF 296
+ +D+L N ++DLT V+F+ + H TQ + LL MG++
Sbjct: 260 NHEDVLANPG----EADLTSHVDFAALAATVRAHGLDV-HLSTQGSFLLGMGILERAGRL 314
Query: 297 SKSVGYERYLKEAAKIKPLISPGGLGERFKAL 328
K +++ L P +GE FK L
Sbjct: 315 GADGDQAARDKITGEVERLAGPQAMGELFKVL 346
>ref|NP_298747.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82677 conserved hypothetical protein XF1458 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84267.1|AE003976_1 (AE003976) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 398
Score = 55.5 bits (132), Expect = 9e-07
Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 35/354 (9%)
Query: 4 FGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
F +M+ LY GYY G+ GDF T+ + F VA + +L++ L
Sbjct: 40 FSRFMELALYAPGLGYYSAGASKFGEAGDFITAPELGSLFATTVANALAPVLQQ--LGAL 97
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
++E+G G F + L L + ++ A + EP EL++ Q+ K+ L
Sbjct: 98 ACVLELGGGSGAFAEMLLKRLMELH-RLPQRYAIL--EPSAELRQRQQLHLKRTLPPSLF 154
Query: 121 -ICDLKDLDFKGHENAFVVSNELFDAFACE--IVKDNKML--FIAHDHKGVWGAIDEPTK 175
+ + D F + V +NE+ DA I++D ++ + D + + + P
Sbjct: 155 ALVEWVDAPFSEQWDGVVFANEVIDALPASRFIMRDREVYEATVVLDAQQRFVSAQHPAD 214
Query: 176 ELLKNL--DLKQGCAPLFLEAFIKDLLEKL--------NEASSWVFLSFDYGD------E 219
LL+ +++ + F + + ++L +L V L DYG
Sbjct: 215 ALLQQAVRHIERDLSARFADGYCSEVLPQLPYWVQAVAGGLKRGVLLFIDYGYPRTEYYR 274
Query: 220 TERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFSFFKT 279
+ER LRAF H+ D L D+T V+F+ + + + T
Sbjct: 275 SERDTGTLRAFYRHRVHDDWYRWPGL------QDVTASVDFTALAEAGTAAGFDMAGYCT 328
Query: 280 QANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFVKK 333
QA+ LL GL LL + V L ++K L P +GERF+ + F ++
Sbjct: 329 QASFLLSHGLDRLLAHAEEGVDEVAKLWLRNQVKRLTLPTEMGERFQVMGFARE 382
>ref|NP_650054.1| (NM_141797) CG17726 gene product [Drosophila melanogaster]
gb|AAL28469.1| (AY060921) GM06493p [Drosophila melanogaster]
Length = 406
Score = 53.9 bits (128), Expect = 3e-06
Identities = 75/294 (25%), Positives = 114/294 (38%), Gaps = 40/294 (13%)
Query: 7 YMQEWLYG-EKGYY-RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIV 64
YM+E L + GYY + + G++GDF TS +S+ FG V +++ + P ++V
Sbjct: 40 YMREVLTNPQAGYYMNRDVFGREGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLV 99
Query: 65 EIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK-QATQLDLMICD 123
E+G G D+ L V P + QR + Q D +
Sbjct: 100 ELGPGRGTLARDVLKVLTKFKQDAEFSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPH 159
Query: 124 LKDLDFKGHENAF--------------VVSNELFDAFACEIVK--DNKMLFIAHDHKGVW 167
++ AF V+++E FDA ++ D K + D
Sbjct: 160 YQEGTTASGTKAFWHRRLEDVPQGFSLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSD 219
Query: 168 GAID-----------EPTKELLKNLDLK-QGCAPLFLEAFIK-DLLEKLNEASSWVFLSF 214
GA + P L + L + + C LE + LL + E + L
Sbjct: 220 GAQEASFRYVLSRSQTPVSSLYRPLPGETRSCLEHSLETERQVGLLAERIERDGGIALIM 279
Query: 215 DYGDETERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFE 268
DYG E+ D RAFK H+ D L S +DLT DV+F LVR + E
Sbjct: 280 DYGHFGEKTDT-FRAFKQHK---LHDPLVEPGS----ADLTADVDFKLVRHIAE 325
>gb|AAF54614.1| (AE003690) CG17726 gene product [Drosophila melanogaster]
Length = 437
Score = 53.9 bits (128), Expect = 3e-06
Identities = 75/294 (25%), Positives = 114/294 (38%), Gaps = 40/294 (13%)
Query: 7 YMQEWLYG-EKGYY-RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIV 64
YM+E L + GYY + + G++GDF TS +S+ FG V +++ + P ++V
Sbjct: 71 YMREVLTNPQAGYYMNRDVFGREGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLV 130
Query: 65 EIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK-QATQLDLMICD 123
E+G G D+ L V P + QR + Q D +
Sbjct: 131 ELGPGRGTLARDVLKVLTKFKQDAEFSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPH 190
Query: 124 LKDLDFKGHENAF--------------VVSNELFDAFACEIVK--DNKMLFIAHDHKGVW 167
++ AF V+++E FDA ++ D K + D
Sbjct: 191 YQEGTTASGTKAFWHRRLEDVPQGFSLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSD 250
Query: 168 GAID-----------EPTKELLKNLDLK-QGCAPLFLEAFIK-DLLEKLNEASSWVFLSF 214
GA + P L + L + + C LE + LL + E + L
Sbjct: 251 GAQEASFRYVLSRSQTPVSSLYRPLPGETRSCLEHSLETERQVGLLAERIERDGGIALIM 310
Query: 215 DYGDETERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFE 268
DYG E+ D RAFK H+ D L S +DLT DV+F LVR + E
Sbjct: 311 DYGHFGEKTDT-FRAFKQHK---LHDPLVEPGS----ADLTADVDFKLVRHIAE 356
>ref|NP_653337.1| (NM_144736) hypothetical protein PRO1853, isoform 1 [Homo sapiens]
Length = 441
Score = 53.9 bits (128), Expect = 3e-06
Identities = 86/361 (23%), Positives = 148/361 (40%), Gaps = 62/361 (17%)
Query: 7 YMQEWLYGE-KGYY-RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIV 64
YM+E L KGYY + ++G+KGDF TS +S+ FG + + I ++V
Sbjct: 62 YMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGELLGIWFISEWMATGKSTAFQLV 121
Query: 65 EIGSHHGHFLSDIASFLNALSVGVMEQC-----AFVSCEPLKELQKLQRT---------- 109
E+G G + DI L V++ C + L E+Q L T
Sbjct: 122 ELGPGRGTLVGDILRVFTQLG-SVLKNCDISVHLVEVSQKLSEIQALTLTKEKVPLERNA 180
Query: 110 ----IFKQATQLDLMICDLKDLDFKGHENAFVVSNELFDAFACEIVKDNKMLFIAHDHKG 165
K T+ + I +DL +F +++E FD ++ +K +
Sbjct: 181 GSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLAHEFFD-----VLPVHKFQKTPQGWRE 235
Query: 166 VWGAIDEPTKELLKNLDLKQGCAPLFLEAFIKD---------------LLEKLNE---AS 207
V+ ID + L+ + L P EAFI+ ++E+L++ +
Sbjct: 236 VFVDIDPQVSDKLRFV-LAPSATP--AEAFIQHDETRDHVEVCPDAGVIIEELSQRIALT 292
Query: 208 SWVFLSFDYGDETERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLF 267
L DYG + + D R F +H+ L+++ +DLT DV+FS +R +
Sbjct: 293 GGAALVADYGHDGTKTDT-FRGFCDHK-------LHDVLIAPGTADLTADVDFSYLRRMA 344
Query: 268 EKHHAQFSFFKTQA---NALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGER 324
+ A K N +D+ L LL+ ++ ++ L+ L++P +GER
Sbjct: 345 QGKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQLLQ---GYDMLMNPKKMGER 401
Query: 325 F 325
F
Sbjct: 402 F 402
>ref|NP_638777.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42701.1| (AE012462) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 417
Score = 52.0 bits (123), Expect = 1e-05
Identities = 82/360 (22%), Positives = 145/360 (39%), Gaps = 49/360 (13%)
Query: 4 FGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
F +M+ LY GYY G+ GDF T+ + F V+ + +L++ L
Sbjct: 59 FSRFMELALYAPGLGYYSAGASKFGESGDFVTAPELGPLFAATVSGALAPVLQQ--LGPQ 116
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
+++E+G+ G F L L + E+ A + EP +L++ QR ++ +
Sbjct: 117 ARVLEVGAGSGAFAEVTLKRLLELDA-LPERYAIL--EPSADLRERQRERLGRSLIPPVF 173
Query: 121 -ICDLKDLDFKGHENAFVVSNELFDAFACE--IVKDNKML--FIAHDHKGVWGAIDEPTK 175
+ + D F + + +NE+ DA ++D ++ + D + + ++P
Sbjct: 174 DLVEWLDGPFPDDWDGVLFANEVIDALPTPRFTLRDGEVYEETVVLDARQHFARGEQPAD 233
Query: 176 ELLKNLDLKQGCAPLFLEAFIKDLL------EKLNEASSWV-----------FLSFDYGD 218
LL G A LE +++ E L + W+ L DYG
Sbjct: 234 ALL-------GAAVRHLERYLEQPFADGYRSELLPQLPHWIQAVAGGLKRGAMLFVDYGY 286
Query: 219 ------ETERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHA 272
+R+D LRAF H+ + +L DLT V+F+ +
Sbjct: 287 PRGEFYRAQREDGTLRAFYRHR------MHTDLYRWPGLQDLTASVDFTALAEAGTGAGF 340
Query: 273 QFSFFKTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFVK 332
+ + + TQAN LL GL LL ++ ++K L P +GERF+ + F +
Sbjct: 341 ELAGYCTQANFLLGNGLDALLTQADARTDEVGRMRLRQQVKQLTLPSEMGERFQVMGFAR 400
>gb|AAM29473.1| (AY113468) RE41779p [Drosophila melanogaster]
Length = 366
Score = 52.0 bits (123), Expect = 1e-05
Identities = 71/285 (24%), Positives = 109/285 (37%), Gaps = 39/285 (13%)
Query: 15 EKGYY-RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIVEIGSHHGHF 73
+ GYY + + G++GDF TS +S+ FG V +++ + P ++VE+G G
Sbjct: 9 QAGYYMNRDVFGREGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTL 68
Query: 74 LSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK-QATQLDLMICDLKDLDFKGH 132
D+ L V P + QR + Q D + ++
Sbjct: 69 ARDVLKVLTKFKQDAEFSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTASG 128
Query: 133 ENAF--------------VVSNELFDAFACEIVK--DNKMLFIAHDHKGVWGAID----- 171
AF V+++E FDA ++ D K + D GA +
Sbjct: 129 TKAFWHRRLEDVPQGFSLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSDGAQEASFRY 188
Query: 172 ------EPTKELLKNLDLK-QGCAPLFLEAFIK-DLLEKLNEASSWVFLSFDYGDETERK 223
P L + L + + C LE + LL + E + L DYG E+
Sbjct: 189 VLSRSQTPVSSLYRPLPGETRSCLEHSLETERQVGLLAERIERDGGIALIMDYGHFGEKT 248
Query: 224 DMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFE 268
D RAFK H+ D L S +DLT DV+F LVR + E
Sbjct: 249 DT-FRAFKQHK---LHDPLVEPGS----ADLTADVDFKLVRHIAE 285
>ref|NP_641041.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35577.1| (AE011697) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 417
Score = 50.8 bits (120), Expect = 2e-05
Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 47/357 (13%)
Query: 4 FGNYMQEWLYGEK-GYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
F +M+ LY GYY G+ GDF T+ + F V+ + +L++ L
Sbjct: 59 FSRFMELALYAPGLGYYSAGASKFGEAGDFVTAPELGPLFAATVSGALAPVLQQ--LGPQ 116
Query: 61 LKIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQLDLM 120
+++E+G G F L L + E+ A + EP +L++ QR ++ +
Sbjct: 117 ARVLEVGGGSGAFAEVTLKRLLELDA-LPERYAIL--EPSADLRERQRERLGRSLIPPVF 173
Query: 121 -ICDLKDLDFKGHENAFVVSNELFDAFACE--IVKDNKML--FIAHDHKGVWGAIDEPTK 175
+ + D F + + +NE+ DA ++D ++ + D + + ++P
Sbjct: 174 DLVEWLDAPFPDDWDGVLFANEVIDALPTPRFALRDGQVYEETVVLDDQQHFARGEQPAD 233
Query: 176 ELLKNL--DLKQGCAPLFLEAFIKDLLEKLN----------EASSWVFLSFDY--GD--E 219
LL L++ F + + +LL +L + + +F+ + Y G+
Sbjct: 234 ALLSAAVRHLERYLEQPFADGYRSELLPQLPYWIQAVAGGLKRGAMLFVDYGYPRGEFYR 293
Query: 220 TERKDMHLRAFKNHQALDFKDILNNLASLYQQ---SDLTYDVNFSLVRFLFEKHHAQFSF 276
+R+D LRAF H+ + LY+ DLT V+F+ + + +
Sbjct: 294 AQRQDGTLRAFYRHRMHE---------DLYRWPGLQDLTASVDFTALAEAGTGAGFELAG 344
Query: 277 FKTQANALLDMGLMGLL---ETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEF 330
+ TQA+ LL GL LL +T + VG R L+E +IK L P +GERF+ + F
Sbjct: 345 YCTQASFLLGNGLDALLAQADTRTDEVGRMR-LRE--QIKRLTLPSEMGERFQVMGF 398
>ref|NP_189511.1| (NM_113790) unknown protein [Arabidopsis thaliana]
Length = 476
Score = 45.8 bits (107), Expect = 7e-04
Identities = 84/392 (21%), Positives = 154/392 (38%), Gaps = 75/392 (19%)
Query: 3 SFGNYMQEWLYGEKG--YYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
S YM+E L K Y + + G +GDF TS VS+ FG + + + L E+
Sbjct: 94 SVAEYMEEVLTNPKAGFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPER 153
Query: 61 LKIVEIGSHHGHFLSDI-------ASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK- 112
+ +VE+G G ++D+ +F +L + ++E C P LQKLQ K
Sbjct: 154 VNLVELGPGRGTLMADLLRGTSKFKNFTESLHIHLVE------CSP--ALQKLQHQNLKC 205
Query: 113 --QATQLDLMICDLKDLDFKGHEN---------AFVVSNELFDA-----FACEIVKDN-- 154
+++ + L H ++++E +DA F + ++ +
Sbjct: 206 TDESSSEKKAVSSLAGTPVHWHATLQEVPSGVPTLIIAHEFYDALPVHQFQTQYLQKSTR 265
Query: 155 ----KMLFIAHDHKGVWGAIDEPTKELLKNLDLKQGCAP--------LFLEAFIKDLLEK 202
KM+ + D K + +PT L + P + + DL ++
Sbjct: 266 GWCEKMVDVGEDSKFRFVLSPQPTPAALYLMKRCTWATPEEREKMEHVEISPKSMDLTQE 325
Query: 203 LNE---ASSWVFLSFDYGDETERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVN 259
+ + + L DYG D L+A + H+ F +IL++ S +DL+ V+
Sbjct: 326 MAKRIGSDGGGALIIDYGMNAIISD-SLQAIRKHK---FVNILDDPGS----ADLSAYVD 377
Query: 260 FSLVRFLFEKHHAQFSFF--KTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLIS 317
F ++ E+ S TQ+ L +G+ ++ ++ E+ A L+
Sbjct: 378 FPSIKHSAEEASENVSVHGPMTQSQFLGSLGINFRVDALLQNCNDEQAESLRAGYWQLVG 437
Query: 318 PG--------------GLGERFKALEFVKKNK 335
G G+G R+ A+ V KN+
Sbjct: 438 DGEAPFWEGPNEQTPIGMGTRYLAMSIVNKNQ 469
>ref|NP_355171.1| (NC_003062) AGR_C_4024p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532887.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK87956.1| (AE008137) AGR_C_4024p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43203.1| (AE009171) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 366
Score = 45.1 bits (105), Expect = 0.001
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 15 EKGYYR-KALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPLKIVEIGSHHGHF 73
E GYY+ + G+ GDF T+ VS+ FG + +++ + ++VEIG G
Sbjct: 33 EHGYYKSREPFGRSGDFITAPEVSQLFGEMLGVFVVHAWQRHGAPAQTQLVEIGPGRGTM 92
Query: 74 LSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQR-TIFKQATQLDLMICDLKDLDFKGH 132
+SD+ + ++ + E E L +Q+ T+ A +L D
Sbjct: 93 MSDMLRVIRRIAPPLYETMRVHLVETSPRLSAIQKETLTAHADRLTWH----DSFDDVPE 148
Query: 133 ENAFVVSNELFDA 145
+V+NELFDA
Sbjct: 149 GFLLLVANELFDA 161
>dbj|BAB89024.1| (AP003243) hypothetical protein~similar to Arabidopsis thaliana
chromosome 3,At3g28700 [Oryza sativa (japonica
cultivar-group)]
Length = 478
Score = 44.3 bits (103), Expect = 0.002
Identities = 35/119 (29%), Positives = 56/119 (46%), Gaps = 17/119 (14%)
Query: 3 SFGNYMQEWLYG-EKGYY-RKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP 60
S YM+E L + G+Y + + G GDF TS VS+ FG + + L E+
Sbjct: 125 SVAEYMEEVLTNPQSGFYINRDVFGTSGDFITSPEVSQMFGEMTGVWAMCLWEQMGQPEK 184
Query: 61 LKIVEIGSHHGHFLSDI-------ASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFK 112
+ ++E+G G L+D+ +F AL++ ++E C P LQK+Q K
Sbjct: 185 VNLIELGPGRGTLLADLLRGSSKFVNFTKALNINLVE------CSP--TLQKVQYNTLK 235
>ref|NP_220439.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||E71712 hypothetical protein RP045 - Rickettsia prowazekii
emb|CAA14516.1| (AJ235270) unknown [Rickettsia prowazekii]
Length = 358
Score = 44.3 bits (103), Expect = 0.002
Identities = 76/356 (21%), Positives = 150/356 (41%), Gaps = 53/356 (14%)
Query: 8 MQEWLYGEKGYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLP--LKI 63
MQE L Y K + + +GDF T+ +S+ FG + + I+ E +++ P L +
Sbjct: 23 MQEVLSSNPNSYYKQVKSLASEGDFVTAPEISQLFGEIIGLWCIR--EWQRIGNPKSLSL 80
Query: 64 VEIGSHHGHFLSD-------IASFLNALSVGVMEQCAFVSCEPLKELQKLQRTIFKQATQ 116
VE+G G + D + F ALS+ ++E LQ
Sbjct: 81 VELGPGRGLLMRDLLRTAKLVPEFYKALSIKLIEINKNFIAHQKSNLQ-----------D 129
Query: 117 LDLMICDLKDLDFKGHENAFVVSNELFDAFAC-EIVKDNKM----LFIAHDHKGVWG--- 168
++L I L ++ + +++NE FD + +K ++ +F+ G
Sbjct: 130 INLPIKHLAFIEEIPQKPTIIITNEFFDTMPIKQYIKVKELWYERIFLVQPVDGRIKYDK 189
Query: 169 -AIDEPTKELLKNLDLKQGCAPLFLEAF-----IKDLLEKLNEASSWVFLSFDYG----- 217
+I++ +E L ++ + E++ IK + E L + L DYG
Sbjct: 190 ISINKRLQEYLLRTHIEAKDGAILEESYKSIEIIKFIAEHLKKVRG-SCLIIDYGYDIAP 248
Query: 218 -DETE-RKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFSLVRFLFEKHHAQFS 275
D T + + L+A + H+ + IL NL ++DL+ V+F ++ + +
Sbjct: 249 YDRTRYQYNPTLQAVRKHK---YCPILENLG----EADLSAHVDFYSLKTVAKNSKINVI 301
Query: 276 FFKTQANALLDMGLMGLLETFSKSVGYERYLKEAAKIKPLISPGGLGERFKALEFV 331
+Q + L+ G++ +T + ++ L +++ LI P +G+ FK L+ +
Sbjct: 302 DTISQRDFLIQNGILLRKQTLKDKLNDKQVLIIEKQMERLILPEQMGKLFKVLQIM 357
>ref|NP_442092.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S76310 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10162.1| (D64000) ORF_ID:slr0351~unknown protein [Synechocystis sp. PCC
6803]
gb|AAB72122.1| (U38915) ORF416; Method: conceptual translation supplied by author
[Synechocystis sp. PCC 6803]
Length = 416
Score = 43.9 bits (102), Expect = 0.003
Identities = 82/374 (21%), Positives = 145/374 (37%), Gaps = 65/374 (17%)
Query: 3 SFGNYMQEWLYG-EKGYYRKAL--IGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFL 59
+F +M+ LY + GYY I +GDF T++++ FG +A +++ +
Sbjct: 40 TFAEFMEWVLYQPDYGYYSSGQVDIAIRGDFVTAIALGADFGELLAEQFLEMWQRLGEPD 99
Query: 60 PLKIVEIGSHHGHFLSDIAS--------FLNALSVGVMEQCAFVS------CEPLKELQK 105
++E+G+ G F + + F AL ++E+ A + EP +E+ K
Sbjct: 100 RFDLLELGAGTGAFAQTVLAQTQRLYPEFFAALHYHIIEESAALRRRQANLLEPWREMGK 159
Query: 106 LQRTIFKQATQLDLMICDLKDLDFKGHENAFVVSNELFDAFACE-------IVKDNKMLF 158
+Q + + L+ C SNE FDA ++K+ +
Sbjct: 160 IQWQTWPELANDSLVGC--------------CFSNEFFDALPVHRVGIKQGVLKEQYIEA 205
Query: 159 IAHDHKGVWGAID-EPTKELLKNLDLKQGCAP----------LFLEAFIKDLLEKLNEAS 207
+ D VW + + + + L+ P L + ++++ L A
Sbjct: 206 GSTDLTSVWDDLSTDKLVDYFASFGLQLTSPPYGENYETEVNLAAQQALEEIARVL--AQ 263
Query: 208 SWVFLSFDYGDET------ERKDMHLRAFKNHQALDFKDILNNLASLYQQSDLTYDVNFS 261
WV L+ DYG +R L+ + + D N +L QQ D+T VNF+
Sbjct: 264 GWV-LTVDYGHPAGKYYHPQRTGGTLQCYFQQRHHD-----NPFVNLGQQ-DVTAHVNFT 316
Query: 262 LVRFLFEKHHAQFSFFKTQANALLDMGLMG-LLETFSKSVGYERYLKEAAKIKPLISPGG 320
+ + E + F Q L+++GL L + S A + LI P G
Sbjct: 317 ALEWWGECYGLNRLDFSQQGPFLMNLGLGDRLADLSSGQYDLNEIFSRRAILHQLIDPNG 376
Query: 321 LGERFKALEFVKKN 334
LG+ L+ K N
Sbjct: 377 LGKFGVLLQGKKLN 390
>ref|NP_627598.1| (NC_003888) hypothetical protein [Streptomyces coelicolor A3(2)]
pir||T36079 hypothetical protein SCE126.09 - Streptomyces coelicolor
emb|CAB40931.1| (AL049630) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 362
Score = 43.5 bits (101), Expect = 0.003
Identities = 33/109 (30%), Positives = 48/109 (43%), Gaps = 3/109 (2%)
Query: 2 RSFGNYMQEWLYGEKGYYRKALIGQKGDFYTSVSVSKFFGGAVAFYIIKLLEEEKLFLPL 61
R + QE LYG +G+YR G G F TSV S F GAVA + ++ E L
Sbjct: 19 RGWREATQEALYGPEGFYRAGPEGPAGHFRTSVHASPLFAGAVARLLCRVDEALGRPAVL 78
Query: 62 KIVEIGSHHGHFLSDIASFLNALSVGVMEQCAFVSCEPLKELQKLQRTI 110
V++ + G +A L AL V+ + + E + L R +
Sbjct: 79 DFVDMAAGRGEL---VAGVLAALPADVVARTRAYAVEVAARPEGLDRRV 124
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.140 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,274,489
Number of Sequences: 1026957
Number of extensions: 8241627
Number of successful extensions: 18067
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 18052
Number of HSP's gapped (non-prelim): 26
length of query: 336
length of database: 324,149,939
effective HSP length: 121
effective length of query: 215
effective length of database: 199,888,142
effective search space: 42975950530
effective search space used: 42975950530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 97 (42.0 bits)