BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645436|ref|NP_207610.1| hypothetical protein
[Helicobacter pylori 26695]
         (148 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207610.1|  (NC_000915) hypothetical protein [Helicoba...   290  3e-78
ref|NP_223471.1|  (NC_000921) putative [Helicobacter pylori ...   280  3e-75

>ref|NP_207610.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64622 hypothetical protein HP0817 - Helicobacter pylori (strain 26695)
 gb|AAD07872.1| (AE000593) H. pylori predicted coding region HP0817 [Helicobacter
           pylori 26695]
          Length = 148

 Score =  290 bits (742), Expect = 3e-78
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MNRMNKNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60
           MNRMNKNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV
Sbjct: 1   MNRMNKNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60

Query: 61  ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120
           ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ
Sbjct: 61  ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120

Query: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148
           SVAYEILCENQPLWIEVSTNLGKRTFQF
Sbjct: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148



>ref|NP_223471.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71892 hypothetical protein jhp0753 - Helicobacter pylori (strain J99)
 gb|AAD06332.1| (AE001506) putative [Helicobacter pylori J99]
          Length = 148

 Score =  280 bits (716), Expect = 3e-75
 Identities = 143/148 (96%), Positives = 145/148 (97%)

Query: 1   MNRMNKNYLLIFLLLASLVAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60
           MNRM   +LLIFLLLASL+AREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV
Sbjct: 1   MNRMKPIFLLIFLLLASLIAREKDASSNLFDLIDKGINREQELKEQEQKTRLKLAQSPLV 60

Query: 61  ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120
           ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ
Sbjct: 61  ALEIVPQETPYLEWQGARESYYLKVSAVVESVVILKIDINQGRSCSLYPTPKSVSLVRNQ 120

Query: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148
           SVAYEILCENQPLWIEVSTNLGKRTFQF
Sbjct: 121 SVAYEILCENQPLWIEVSTNLGKRTFQF 148



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,502,769
Number of Sequences: 1026957
Number of extensions: 3005856
Number of successful extensions: 9314
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9312
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 324,149,939
effective HSP length: 110
effective length of query: 38
effective length of database: 211,184,669
effective search space: 8025017422
effective search space used: 8025017422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)