BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645439|ref|NP_207613.1| hypothetical protein
[Helicobacter pylori 26695]
         (153 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207613.1|  (NC_000915) hypothetical protein [Helicoba...   309  7e-84
ref|NP_223477.1|  (NC_000921) putative [Helicobacter pylori ...   288  1e-77

>ref|NP_207613.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64622 hypothetical protein HP0820 - Helicobacter pylori (strain 26695)
 gb|AAD07873.1| (AE000593) H. pylori predicted coding region HP0820 [Helicobacter
           pylori 26695]
          Length = 153

 Score =  309 bits (791), Expect = 7e-84
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASK 60
           MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASK
Sbjct: 1   MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASK 60

Query: 61  EFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSA 120
           EFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSA
Sbjct: 61  EFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSA 120

Query: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153
           LGLFHNPIKDARLHECFEKARALIHYQRSFFEE
Sbjct: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153



>ref|NP_223477.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71893 hypothetical protein jhp0759 - Helicobacter pylori (strain J99)
 gb|AAD06336.1| (AE001506) putative [Helicobacter pylori J99]
          Length = 153

 Score =  288 bits (738), Expect = 1e-77
 Identities = 142/153 (92%), Positives = 149/153 (96%)

Query: 1   MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDIWASK 60
           MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKD+WASK
Sbjct: 1   MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASK 60

Query: 61  EFNQRFAKEISHFLNTQGHAYGFDGLNGLEILGYVPKDALKKSNFYAPIKKQARFFRPSA 120
           EFNQRFAKEISHFLNTQGHA G D L+ LEILGYVPKD+L+K+NFYAPIKKQA+F+RPSA
Sbjct: 61  EFNQRFAKEISHFLNTQGHACGLDELDALEILGYVPKDSLEKANFYAPIKKQAQFYRPSA 120

Query: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153
           LGLFHNPIKDARLHECFEKARALIHYQRSFFEE
Sbjct: 121 LGLFHNPIKDARLHECFEKARALIHYQRSFFEE 153



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.142    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,443,124
Number of Sequences: 1026957
Number of extensions: 3546614
Number of successful extensions: 9232
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9230
Number of HSP's gapped (non-prelim): 2
length of query: 153
length of database: 324,149,939
effective HSP length: 110
effective length of query: 43
effective length of database: 211,184,669
effective search space: 9080940767
effective search space used: 9080940767
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 92 (40.0 bits)