BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645452|ref|NP_207626.1| hypothetical protein
[Helicobacter pylori 26695]
(292 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207626.1| (NC_000915) hypothetical protein [Helicoba... 585 e-166
ref|NP_223490.1| (NC_000921) putative [Helicobacter pylori ... 491 e-138
emb|CAD11318.1| (AJ418366) hypothetical protein [Helicobact... 309 2e-83
emb|CAD11453.1| (AJ418365) hypothetical [Helicobacter pylori] 303 1e-81
ref|NP_473285.1| (NC_000521) hypothetical protein, PFC0760c... 44 0.002
ref|NP_494226.1| (NM_061825) K09F6.1.p [Caenorhabditis eleg... 43 0.004
gb|AAL92183.1| (AC115574) hypothetical protein [Dictyosteli... 42 0.006
>ref|NP_207626.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64624 hypothetical protein HP0833 - Helicobacter pylori (strain 26695)
gb|AAD07884.1| (AE000594) H. pylori predicted coding region HP0833 [Helicobacter
pylori 26695]
Length = 292
Score = 585 bits (1508), Expect = e-166
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ
Sbjct: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
Query: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDT 120
NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDT
Sbjct: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDT 120
Query: 121 KNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQND 180
KNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQND
Sbjct: 121 KNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQND 180
Query: 181 KDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDFYTIGDK 240
KDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDFYTIGDK
Sbjct: 181 KDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDFYTIGDK 240
Query: 241 ALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFLECQS 292
ALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFLECQS
Sbjct: 241 ALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFLECQS 292
>ref|NP_223490.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71891 hypothetical protein jhp0772 - Helicobacter pylori (strain J99)
gb|AAD06351.1| (AE001507) putative [Helicobacter pylori J99]
Length = 296
Score = 491 bits (1264), Expect = e-138
Identities = 247/292 (84%), Positives = 267/292 (90%), Gaps = 2/292 (0%)
Query: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
MFLVKKIGVVI++L+ FLACSQE FI++QKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ
Sbjct: 1 MFLVKKIGVVIMILVCFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
Query: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTN--TANN 118
NMVYQP EER++F QLTKDE++SFNPE SVILLNEPSD+ KN N+ N N ANN
Sbjct: 61 NMVYQPIEERNAFFQLTKDEDNSFNPENSVILLNEPSDNSEKNLLSYPNDPNNNEDNANN 120
Query: 119 DTKNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQ 178
KNPFLYKPKRKTK+PKLIEYSQQ+FYPLK+GDI+MSKEGDQWLIEI+SKALKRFLKDQ
Sbjct: 121 SQKNPFLYKPKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQWLIEIQSKALKRFLKDQ 180
Query: 179 NDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDDFYTIG 238
NDKDRQIQTFTFNDTKTQIAQ KGKISSYVYTTNN LSLRPFYESFLLEKKSD+ YTI
Sbjct: 181 NDKDRQIQTFTFNDTKTQIAQIKGKISSYVYTTNNGSLSLRPFYESFLLEKKSDNVYTIE 240
Query: 239 DKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFLEC 290
+KALD +EISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKS+TELFLEC
Sbjct: 241 NKALDTMEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSDTELFLEC 292
>emb|CAD11318.1| (AJ418366) hypothetical protein [Helicobacter pylori]
Length = 170
Score = 309 bits (792), Expect = 2e-83
Identities = 153/170 (90%), Positives = 164/170 (96%), Gaps = 1/170 (0%)
Query: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
MFLVKKIGVVI++LI FLACSQE FI++QKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ
Sbjct: 1 MFLVKKIGVVIMILICFLACSQESFIKMQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
Query: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNE-SNTNTANND 119
NMVYQPTEERDSFAQLTKDE+DSFNPETSVILLNEPSD+DTKNPPL QNE N NTANND
Sbjct: 61 NMVYQPTEERDSFAQLTKDEDDSFNPETSVILLNEPSDNDTKNPPLYQNEFHNNNTANND 120
Query: 120 TKNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSK 169
TKNPFLYKPKRKTK+PKLIEYSQQ+FYPLK+GDI+MSKEGDQWLIEI+SK
Sbjct: 121 TKNPFLYKPKRKTKNPKLIEYSQQDFYPLKNGDIIMSKEGDQWLIEIQSK 170
>emb|CAD11453.1| (AJ418365) hypothetical [Helicobacter pylori]
Length = 167
Score = 303 bits (777), Expect = 1e-81
Identities = 152/169 (89%), Positives = 162/169 (94%), Gaps = 2/169 (1%)
Query: 1 MFLVKKIGVVIVVLIGFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
MFLVKKIGVVI++LI FLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ
Sbjct: 1 MFLVKKIGVVIMILICFLACSQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQ 60
Query: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDT 120
NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSD++ KNPPL QN+ N N ANN+
Sbjct: 61 NMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDNNEKNPPLYQNDPN-NNANNE- 118
Query: 121 KNPFLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSK 169
K+PFLYKPKRKTK+PKLIEYSQQNFYPLKDGDI+MSKEGDQWL+EIKSK
Sbjct: 119 KSPFLYKPKRKTKNPKLIEYSQQNFYPLKDGDIIMSKEGDQWLVEIKSK 167
>ref|NP_473285.1| (NC_000521) hypothetical protein, PFC0760c [Plasmodium falciparum]
pir||T18501 hypothetical protein C0760c - malaria parasite (Plasmodium
falciparum)
emb|CAB11140.1| (Z98551) hypothetical protein, PFC0760c [Plasmodium falciparum 3D7]
Length = 3394
Score = 43.9 bits (102), Expect = 0.002
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 26/276 (9%)
Query: 23 ERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSFAQLTKDEN- 81
++ + + Q+ + K + DY E + ++ E+ QL KD N
Sbjct: 1827 DQLFNINQDLQKHLDTNQKHLEQLKYDYIEIKERLKIEKTKINKQEKY--IIQLQKDNNL 1884
Query: 82 --DSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTANNDTKNPFLYKPKRKTKDPKLIE 139
+ FN T+ N +D++ N N ++ N NNDT F++ K ++ +L
Sbjct: 1885 ILNDFNSTTTTTNNNNNNDNN------NDNNNDNNDNNNDTYQQFIHSLKANLENSRLEL 1938
Query: 140 YSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKRFLKDQNDKDRQIQTFTFNDTKTQIAQ 199
N + I +S E ++ I I L K++ DK + Q N+ I
Sbjct: 1939 KELSNL----NEKIQLSDEKNRMKITILEDKL---FKNEKDKMKLQQIIDDNNKNYMIQY 1991
Query: 200 FKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDD---FYTIGDKALDAIEISKCQMVLKK 256
K K + + + N L L +E+ + D F + + + IE K Q + +
Sbjct: 1992 NKLKTNLDMLSEENRMLLLNKEEYEKQIEQLNHDHKLFISTKNNDIQIIENEKLQEQVDQ 2051
Query: 257 HSTDKLDSQHKAISIDLDFKK-----ERFKSNTELF 287
+ T + + ++L KK E +S ++F
Sbjct: 2052 YITTINEKDKIIVHLNLQIKKLANQNEHMRSRCDIF 2087
>ref|NP_494226.1| (NM_061825) K09F6.1.p [Caenorhabditis elegans]
pir||T32093 hypothetical protein K09F6.1 - Caenorhabditis elegans
gb|AAB66192.1| (AF016683) Hypothetical protein K09F6.1 [Caenorhabditis elegans]
Length = 351
Score = 43.1 bits (100), Expect = 0.004
Identities = 65/295 (22%), Positives = 116/295 (39%), Gaps = 58/295 (19%)
Query: 21 SQERFIQLQKKAQEQENDGSKRPSYVDSDYEVFSETIFLQNMVYQPTEERDSFAQLTKDE 80
+Q+R ++L+++ + E KR SY + DY VY+ E + +
Sbjct: 73 NQKRNVKLERRNLKYEAIPEKRESYQEKDYR--------NPPVYK--AENEQLFDDVPNH 122
Query: 81 NDSFN---PETSVILLNEPSDSD-----TKNPPLNQNESNTN---------------TAN 117
ND N P +V + EP D D K P +N ++N N T+
Sbjct: 123 NDGINHLKPLKNVYIKEEPEDEDYHMEYEKIPKINMEQNNVNELFTEPQKNTPGKMKTSK 182
Query: 118 NDTKNPFLYKPKRKT--KDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIKSKALKR-- 173
N+ K+ L +PK+K+ K E Q+ P +D ++ ++ EI ++K+
Sbjct: 183 NEKKDGTLSRPKKKSVVKVEAKTESDQEIEEPDEDMQAAPPRKPEEKTEEITPVSIKKRS 242
Query: 174 FLKDQNDKDRQIQTFTFNDTKTQIAQFKGKISSYVYTTNNSDLSLRPFYESFLLEKKSDD 233
F +D + Q F K+ +++ R Y+ LE+ +D
Sbjct: 243 FQQDATKNLNKRQKFDLKRGKSM-----------------NNVKPRKLYK-MQLEEDEED 284
Query: 234 FYTIGDKALDAIEISKCQMVLKKHSTDKLDSQHKAISIDLDFKKERFKSNTELFL 288
+ D+ EIS + +++ ST L+ + K DL +K + FL
Sbjct: 285 EEPMVDETPQNTEISIKKRPVQQDSTKNLNKRQK---FDLKRRKNMSRVRPPFFL 336
>gb|AAL92183.1| (AC115574) hypothetical protein [Dictyostelium discoideum]
Length = 791
Score = 42.4 bits (98), Expect = 0.006
Identities = 32/137 (23%), Positives = 62/137 (44%), Gaps = 10/137 (7%)
Query: 57 IFLQNMVYQPTEERDSFAQLTKDENDSFNPETSVILLNEPSDSDTKNPPLNQNESNTNTA 116
I L + + E++ QL + N++ N E + N ++++ N N N +N N
Sbjct: 496 IDLDRLFFDKREKQQKLDQLNNNNNNNNNSENNNNNNNNNNNNNNNNIN-NNNNNNINNN 554
Query: 117 NNDTKNP---------FLYKPKRKTKDPKLIEYSQQNFYPLKDGDIMMSKEGDQWLIEIK 167
NND N +L +P++ + K+ E S N K+ + KE ++ + K
Sbjct: 555 NNDNNNSSNNTSPTSNYLNEPQKIVNNDKVSENSSNNEDSQKNKEKEKEKEKEKEKEKEK 614
Query: 168 SKALKRFLKDQNDKDRQ 184
K ++ + + DKD++
Sbjct: 615 EKEKEKEKEKEKDKDKE 631
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,835,018
Number of Sequences: 1026957
Number of extensions: 8174185
Number of successful extensions: 36795
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36663
Number of HSP's gapped (non-prelim): 35
length of query: 292
length of database: 324,149,939
effective HSP length: 120
effective length of query: 172
effective length of database: 200,915,099
effective search space: 34557397028
effective search space used: 34557397028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 97 (42.0 bits)