BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645455|ref|NP_207629.1| hypothetical protein
[Helicobacter pylori 26695]
         (119 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207629.1|  (NC_000915) hypothetical protein [Helicoba...   253  2e-67
ref|NP_223493.1|  (NC_000921) putative [Helicobacter pylori ...   200  2e-51

>ref|NP_207629.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64624 hypothetical protein HP0836 - Helicobacter pylori (strain 26695)
 gb|AAD07893.1| (AE000595) H. pylori predicted coding region HP0836 [Helicobacter
           pylori 26695]
          Length = 119

 Score =  253 bits (647), Expect = 2e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MPMRLHTAFFGINSLLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKS 60
           MPMRLHTAFFGINSLLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKS
Sbjct: 1   MPMRLHTAFFGINSLLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKS 60

Query: 61  IQPLPSPRLENNDQPVISSNPTNAIPNTPILTPNNVIELNAWAWAWLQNPPFHPLKPWL 119
           IQPLPSPRLENNDQPVISSNPTNAIPNTPILTPNNVIELNAWAWAWLQNPPFHPLKPWL
Sbjct: 61  IQPLPSPRLENNDQPVISSNPTNAIPNTPILTPNNVIELNAWAWAWLQNPPFHPLKPWL 119



>ref|NP_223493.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71889 hypothetical protein jhp0775 - Helicobacter pylori (strain J99)
 gb|AAD06355.1| (AE001508) putative [Helicobacter pylori J99]
          Length = 201

 Score =  200 bits (509), Expect = 2e-51
 Identities = 97/99 (97%), Positives = 99/99 (99%)

Query: 3   MRLHTAFFGINSLLVASLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ 62
           MRLHTAFFGINSLLVA+LLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ
Sbjct: 1   MRLHTAFFGINSLLVATLLISGCSLFKKRNTNAQLIPPSANGLQAPIYPPTNFTPRKSIQ 60

Query: 63  PLPSPRLENNDQPVISSNPTNAIPNTPILTPNNVIELNA 101
           PLPSPRLENNDQP+ISSNPTNAIPNTPILTPNNVIELNA
Sbjct: 61  PLPSPRLENNDQPIISSNPTNAIPNTPILTPNNVIELNA 99



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.135    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,850,824
Number of Sequences: 1026957
Number of extensions: 4111174
Number of successful extensions: 19944
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19942
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 324,149,939
effective HSP length: 95
effective length of query: 24
effective length of database: 226,589,024
effective search space: 5438136576
effective search space used: 5438136576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)