BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645456|ref|NP_207630.1| hypothetical protein
[Helicobacter pylori 26695]
(102 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207630.1| (NC_000915) hypothetical protein [Helicoba... 200 3e-51
ref|NP_223493.1| (NC_000921) putative [Helicobacter pylori ... 197 2e-50
ref|NP_282176.1| (NC_002163) putative lipoprotein [Campylob... 106 4e-23
ref|NP_231837.1| (NC_002505) conserved hypothetical protein... 46 7e-05
>ref|NP_207630.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64624 hypothetical protein HP0837 - Helicobacter pylori (strain 26695)
gb|AAD07894.1| (AE000595) H. pylori predicted coding region HP0837 [Helicobacter
pylori 26695]
Length = 102
Score = 200 bits (508), Expect = 3e-51
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR
Sbjct: 1 MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
Query: 61 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGARG 102
VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGARG
Sbjct: 61 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGARG 102
>ref|NP_223493.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71889 hypothetical protein jhp0775 - Helicobacter pylori (strain J99)
gb|AAD06355.1| (AE001508) putative [Helicobacter pylori J99]
Length = 201
Score = 197 bits (501), Expect = 2e-50
Identities = 100/102 (98%), Positives = 102/102 (99%)
Query: 1 MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
+GMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR
Sbjct: 100 VGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 159
Query: 61 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGARG 102
VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSG+RG
Sbjct: 160 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILSGSRG 201
>ref|NP_282176.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
pir||G81304 probable lipoprotein Cj1026c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73282.1| (AL139077) putative lipoprotein [Campylobacter jejuni]
Length = 171
Score = 106 bits (265), Expect = 4e-23
Identities = 50/98 (51%), Positives = 72/98 (73%)
Query: 1 MGMGVAPESTISPSQALALAKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTR 60
+G G+AP +T+S +QALALAKRAAI D YRQL K+YG++VN +DTVKD +L++S I +
Sbjct: 73 VGEGIAPMNTVSTAQALALAKRAAITDAYRQLASKLYGVKVNGKDTVKDAMLRSSTITAQ 132
Query: 61 VNALIRNAEITETIYKDGLCQVSMELKLDGRIWYRILS 98
VN LI+NA I + + GL +V++ELK+D W + +
Sbjct: 133 VNGLIKNASIIDENFNQGLYRVNLELKIDADKWKELFA 170
>ref|NP_231837.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||D82105 conserved hypothetical protein VC2206 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95351.1| (AE004292) conserved hypothetical protein [Vibrio cholerae]
Length = 145
Score = 46.2 bits (108), Expect = 7e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 20 AKRAAIVDGYRQLGEKMYGIRVNAQDTVKDMVLQNSVIKTRVNALIRNAEITETIYKDGL 79
A RA+ +D YR+L E++YG+R++ + ++D L + V+ +IR AE+ + YK G
Sbjct: 53 AMRASKIDAYRELAEQVYGMRISGRAELQDQRLGTELTAGAVDGVIRGAEVVRS-YKVGD 111
Query: 80 CQVSMELKLDGR 91
V+ EL+LD R
Sbjct: 112 SYVT-ELRLDIR 122
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,505,585
Number of Sequences: 1026957
Number of extensions: 1526357
Number of successful extensions: 3891
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3887
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 324,149,939
effective HSP length: 78
effective length of query: 24
effective length of database: 244,047,293
effective search space: 5857135032
effective search space used: 5857135032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)