BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645457|ref|NP_207631.1| hypothetical protein
[Helicobacter pylori 26695]
(205 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207631.1| (NC_000915) hypothetical protein [Helicoba... 415 e-115
ref|NP_223494.1| (NC_000921) putative [Helicobacter pylori ... 404 e-112
>ref|NP_207631.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64624 hypothetical protein HP0838 - Helicobacter pylori (strain 26695)
gb|AAD07895.1| (AE000595) H. pylori predicted coding region HP0838 [Helicobacter
pylori 26695]
Length = 205
Score = 415 bits (1066), Expect = e-115
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MRYFRSAFLLFFMTLFFASCSKHPFSKQTPKTREQIRQEEARKKREETLNALRQFRLIYI 60
MRYFRSAFLLFFMTLFFASCSKHPFSKQTPKTREQIRQEEARKKREETLNALRQFRLIYI
Sbjct: 1 MRYFRSAFLLFFMTLFFASCSKHPFSKQTPKTREQIRQEEARKKREETLNALRQFRLIYI 60
Query: 61 NTPVFRFYDYGTIKTDKDHNIEVTLYKLSQRVGDIYMTKRNICFSQKCSAKWIAARDLFG 120
NTPVFRFYDYGTIKTDKDHNIEVTLYKLSQRVGDIYMTKRNICFSQKCSAKWIAARDLFG
Sbjct: 61 NTPVFRFYDYGTIKTDKDHNIEVTLYKLSQRVGDIYMTKRNICFSQKCSAKWIAARDLFG 120
Query: 121 KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI 180
KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI
Sbjct: 121 KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI 180
Query: 181 AIRIEPYEPSLQDLEDNENADSELQ 205
AIRIEPYEPSLQDLEDNENADSELQ
Sbjct: 181 AIRIEPYEPSLQDLEDNENADSELQ 205
>ref|NP_223494.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71889 hypothetical protein jhp0776 - Helicobacter pylori (strain J99)
gb|AAD06356.1| (AE001508) putative [Helicobacter pylori J99]
Length = 205
Score = 404 bits (1037), Expect = e-112
Identities = 198/205 (96%), Positives = 202/205 (97%)
Query: 1 MRYFRSAFLLFFMTLFFASCSKHPFSKQTPKTREQIRQEEARKKREETLNALRQFRLIYI 60
MRYFRSAFLLFFMTLFF SCSKHPFSKQTPKT+E+IRQEEA KKREETLNALRQFRLIYI
Sbjct: 1 MRYFRSAFLLFFMTLFFVSCSKHPFSKQTPKTKERIRQEEANKKREETLNALRQFRLIYI 60
Query: 61 NTPVFRFYDYGTIKTDKDHNIEVTLYKLSQRVGDIYMTKRNICFSQKCSAKWIAARDLFG 120
NTPVFRFYDYGTIKTDKDHN EVTLYKLSQ+VGDIYMTKR+ICFSQKCSAKWIAARDLFG
Sbjct: 61 NTPVFRFYDYGTIKTDKDHNTEVTLYKLSQKVGDIYMTKRSICFSQKCSAKWIAARDLFG 120
Query: 121 KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI 180
KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI
Sbjct: 121 KVSYGDLFDDIVLGRDIFKGLGKRHLTPEYVIQRFQKSGEIILYERKNGLISFQNLTQKI 180
Query: 181 AIRIEPYEPSLQDLEDNENADSELQ 205
AIRIEPYEPSLQDLEDNENADSELQ
Sbjct: 181 AIRIEPYEPSLQDLEDNENADSELQ 205
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,233,481
Number of Sequences: 1026957
Number of extensions: 5103151
Number of successful extensions: 18219
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18217
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 324,149,939
effective HSP length: 115
effective length of query: 90
effective length of database: 206,049,884
effective search space: 18544489560
effective search space used: 18544489560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 94 (40.8 bits)