BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645461|ref|NP_207635.1| hypothetical protein
[Helicobacter pylori 26695]
         (245 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207635.1|  (NC_000915) hypothetical protein [Helicoba...   472  e-132
ref|NP_223498.1|  (NC_000921) putative [Helicobacter pylori ...   454  e-127
ref|NP_281984.1|  (NC_002163) hypothetical protein Cj0823 [C...    47  1e-04

>ref|NP_207635.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64625 hypothetical protein HP0842 - Helicobacter pylori (strain 26695)
 gb|AAD07896.1| (AE000595) H. pylori predicted coding region HP0842 [Helicobacter
           pylori 26695]
          Length = 245

 Score =  472 bits (1215), Expect = e-132
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MLEALNALNQLNALHSKNATHHFNAALPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK 60
           MLEALNALNQLNALHSKNATHHFNAALPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK
Sbjct: 1   MLEALNALNQLNALHSKNATHHFNAALPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK 60

Query: 61  INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLPVLEMKQIKEILSGKDNTPLKEYKE 120
           INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLPVLEMKQIKEILSGKDNTPLKEYKE
Sbjct: 61  INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLPVLEMKQIKEILSGKDNTPLKEYKE 120

Query: 121 LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPN 180
           LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPN
Sbjct: 121 LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPN 180

Query: 181 LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSSVEIVCEKTPMLFAFEERL 240
           LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSSVEIVCEKTPMLFAFEERL
Sbjct: 181 LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSSVEIVCEKTPMLFAFEERL 240

Query: 241 LDTIG 245
           LDTIG
Sbjct: 241 LDTIG 245



>ref|NP_223498.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71889 hypothetical protein jhp0780 - Helicobacter pylori (strain J99)
 gb|AAD06360.1| (AE001508) putative [Helicobacter pylori J99]
          Length = 245

 Score =  454 bits (1167), Expect = e-127
 Identities = 233/245 (95%), Positives = 239/245 (97%)

Query: 1   MLEALNALNQLNALHSKNATHHFNAALPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK 60
           MLEALNALNQLNALHSKNA HHFNA LPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK
Sbjct: 1   MLEALNALNQLNALHSKNAAHHFNATLPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELK 60

Query: 61  INQPYFATMQRNQLGDIVLKNLVPAPKILDALDDLPVLEMKQIKEILSGKDNTPLKEYKE 120
           INQPYFA MQRNQLGDIVLKNLVPAPKILDALDDLPV+EMK++KEILS KDNTPLKEYKE
Sbjct: 61  INQPYFAIMQRNQLGDIVLKNLVPAPKILDALDDLPVIEMKKLKEILSAKDNTPLKEYKE 120

Query: 121 LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPN 180
           LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKK FLQ+KAKKQSVDFYALYPN
Sbjct: 121 LLSEKLIHAKSSQEFLNTANMLLSLQSQVLSFVVENERKKAFLQMKAKKQSVDFYALYPN 180

Query: 181 LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSSVEIVCEKTPMLFAFEERL 240
           LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFS VEIVCEKTPMLFAFE+RL
Sbjct: 181 LGEIGGVIYLKEKEKQLFLKTTLQRTKEVLKEAQNTLLGFSFVEIVCEKTPMLFAFEDRL 240

Query: 241 LDTIG 245
           LDT+G
Sbjct: 241 LDTLG 245



>ref|NP_281984.1| (NC_002163) hypothetical protein Cj0823 [Campylobacter jejuni]
 pir||G81354 hypothetical protein Cj0823 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73088.1| (AL139076) hypothetical protein Cj0823 [Campylobacter jejuni]
          Length = 205

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 24  NAALPILLKVLEKQDKDLFLLQVGNRIIPTKSEQELKINQPYFATMQRNQLGDIVLKNLV 83
           N+ LPI +KVL K     + L + ++ I TKS  EL+I   Y A +     G I  K+L 
Sbjct: 5   NSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGAEYLAELYMQNGGVIQFKHLS 64

Query: 84  PAPKILDALDDLPVLEMKQIKEILSGKDNTPLKEYKELLSEKLIHAKSSQEFLNTANMLL 143
             P      + L +     I  IL  K +     YK+ + + L+  K  + +     ML 
Sbjct: 65  KRPNFKPFEEGLAL-----IIAILEDKIS-----YKKFIIQNLLDCKDIERYQILKEMLF 114

Query: 144 SLQSQVLSFVVENERKKTFLQVKAKKQSVDFYALYPNLGEI 184
           +    +       E K    Q++ + + ++ Y  +   G +
Sbjct: 115 ASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGAL 155



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.135    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,718,566
Number of Sequences: 1026957
Number of extensions: 5235173
Number of successful extensions: 15674
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15668
Number of HSP's gapped (non-prelim): 3
length of query: 245
length of database: 324,149,939
effective HSP length: 118
effective length of query: 127
effective length of database: 202,969,013
effective search space: 25777064651
effective search space used: 25777064651
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 96 (41.6 bits)