BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644716|ref|NP_206886.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(450 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206886.1| (NC_000915) conserved hypothetical protein... 895 0.0
ref|NP_222801.1| (NC_000921) putative [Helicobacter pylori ... 893 0.0
ref|NP_281583.1| (NC_002163) putative oxidoreductase [Campy... 418 e-116
gb|EAA12921.1| (AAAB01008964) agCP11574 [Anopheles gambiae ... 84 4e-15
ref|NP_522375.1| (NC_003296) PUTATIVE MALATE:QUINONE OXIDOR... 81 2e-14
ref|NP_353835.1| (NC_003062) AGR_C_1485p [Agrobacterium tum... 81 2e-14
ref|NP_079160.1| (NM_024884) hypothetical protein FLJ12618 ... 81 2e-14
ref|NP_114214.1| (NC_002759) unknown [Pseudomonas syringae ... 81 2e-14
ref|XP_127035.1| (XM_127035) similar to hypothetical protei... 81 3e-14
ref|NP_232547.1| (NC_002506) transcriptional regulator, put... 77 4e-13
ref|NP_416714.1| (NC_000913) orf, hypothetical protein [Esc... 77 5e-13
ref|NP_486866.1| (NC_003272) hypothetical protein [Nostoc s... 77 5e-13
ref|NP_311126.1| (NC_002695) putative malate:quinone oxidor... 76 9e-13
ref|NP_288790.1| (NC_002655) orf, hypothetical protein [Esc... 75 1e-12
ref|NP_541269.1| (NC_003318) AMINOBUTYRALDEHYDE DEHYDROGENA... 75 2e-12
ref|NP_244828.1| (NC_002570) malate/quinone oxidoreductase ... 74 5e-12
gb|AAH06117.1|AAH06117 (BC006117) Similar to hypothetical p... 74 5e-12
ref|NP_275084.1| (NC_003112) malate:quinone oxidoreductase ... 73 8e-12
ref|NP_283166.1| (NC_003116) probable malate:quinone oxidor... 73 8e-12
ref|NP_503730.1| (NM_071329) Y45G12B.3.p [Caenorhabditis el... 72 1e-11
ref|NP_656840.1| (NC_003995) hypothetical protein predicted... 71 2e-11
ref|NP_436641.1| (NC_003078) CONSERVED HYPOTHETICAL PROTEIN... 70 7e-11
ref|NP_252142.1| (NC_002516) malate:quinone oxidoreductase ... 70 7e-11
ref|NP_372889.1| (NC_002758) hypothetical protein [Staphylo... 69 1e-10
ref|NP_253330.1| (NC_002516) malate:quinone oxidoreductase ... 69 1e-10
ref|NP_417146.1| (NC_000913) orf, hypothetical protein [Esc... 68 2e-10
dbj|BAA16521.1| (D90890) similar to [SwissProt Accession Nu... 68 2e-10
gb|AAA16402.1| (U00008) yojH [Escherichia coli] 66 7e-10
gb|AAF53729.1| (AE003661) CG10639 gene product [Drosophila ... 66 1e-09
dbj|BAA11314.1| (D78208) hypothetical protein URF5 [Plecton... 65 2e-09
ref|NP_311548.1| (NC_002695) hypothetical protein [Escheric... 65 2e-09
ref|NP_289209.1| (NC_002655) orf, hypothetical protein [Esc... 64 5e-09
ref|NP_347951.1| (NC_003030) Glycerol-3-phosphate dehydroge... 64 5e-09
ref|NP_457189.1| (NC_003198) putative GAB DTP gene cluster ... 62 1e-08
ref|NP_461716.1| (NC_003197) paral putative sarcosine oxida... 62 1e-08
ref|NP_628292.1| (NC_003888) conserved hypothetical protein... 62 2e-08
gb|AAD51981.1|AF176206_1 (AF176206) malate:quinone oxidored... 61 2e-08
ref|NP_298232.1| (NC_002488) malate:quinone oxidoreductase ... 61 3e-08
ref|NP_442886.1| (NC_000911) hypothetical protein [Synechoc... 60 5e-08
ref|NP_601207.1| (NC_003450) COG0579:Predicted dehydrogenas... 59 1e-07
ref|NP_623575.1| (NC_003869) predicted dehydrogenase [Therm... 57 6e-07
ref|NP_563467.1| (NC_003366) probable glycerol-3-phosphate ... 54 4e-06
ref|NP_109739.1| (NC_000912) glycerol-3-phospate dehydrogen... 53 8e-06
ref|XP_125762.1| (XM_125762) similar to hypothetical protei... 52 1e-05
ref|NP_561325.1| (NC_003366) conserved hypothetical protein... 51 2e-05
ref|NP_326095.1| (NC_002771) GLYCEROL-3-PHOSPHATE DEHYDROGE... 51 3e-05
ref|NP_217368.1| (NC_000962) hypothetical protein Rv2852c [... 50 4e-05
ref|NP_070683.1| (NC_000917) NADH oxidase (noxA-5) [Archaeo... 49 1e-04
ref|NP_603090.1| (NC_003454) Glycerol-3-phosphate dehydroge... 48 2e-04
ref|NP_521607.1| (NC_003296) PROBABLE SARCOSINE OXIDASE (BE... 46 8e-04
ref|NP_346659.1| (NC_003030) Predicted dehydrogenase with i... 44 0.005
ref|NP_519222.1| (NC_003295) PROBABLE SARCOSINE OXIDASE (BE... 43 0.009
ref|NP_394582.1| (NC_002578) conserved hypothetical protein... 43 0.009
>ref|NP_206886.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O24913|MQO_HELPY Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor])
(MQO)
pir||F64530 conserved hypothetical protein HP0086 - Helicobacter pylori
(strain 26695)
gb|AAD07155.1| (AE000530) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 450
Score = 895 bits (2314), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI
Sbjct: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
Query: 61 ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE
Sbjct: 61 ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK
Sbjct: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG
Sbjct: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
Query: 241 CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK 300
CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK
Sbjct: 241 CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK 300
Query: 301 CWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII 360
CWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII
Sbjct: 301 CWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII 360
Query: 361 PSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL 420
PSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL
Sbjct: 361 PSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL 420
Query: 421 VDSQEIAAYLGESFELERFYKDLSPEELEN 450
VDSQEIAAYLGESFELERFYKDLSPEELEN
Sbjct: 421 VDSQEIAAYLGESFELERFYKDLSPEELEN 450
>ref|NP_222801.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMY5|MQO_HELPJ Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor])
(MQO)
pir||B71976 hypothetical protein jhp0079 - Helicobacter pylori (strain J99)
gb|AAD05663.1| (AE001447) putative [Helicobacter pylori J99]
Length = 450
Score = 893 bits (2308), Expect = 0.0
Identities = 448/450 (99%), Positives = 450/450 (99%)
Query: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI
Sbjct: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
Query: 61 ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE
Sbjct: 61 ETNYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK
Sbjct: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG
Sbjct: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
Query: 241 CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK 300
CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK
Sbjct: 241 CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERNK 300
Query: 301 CWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII 360
CWLKGISLELLKMDLN+DVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII
Sbjct: 301 CWLKGISLELLKMDLNRDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKII 360
Query: 361 PSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL 420
P+LSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL
Sbjct: 361 PTLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNAL 420
Query: 421 VDSQEIAAYLGESFELERFYKDLSPEELEN 450
VDSQEIAAYLGESFELERFYKDLSPEELEN
Sbjct: 421 VDSQEIAAYLGESFELERFYKDLSPEELEN 450
>ref|NP_281583.1| (NC_002163) putative oxidoreductase [Campylobacter jejuni]
sp|P56954|MQO_CAMJE Probable malate:quinone oxidoreductase (Malate dehydrogenase
[acceptor]) (MQO)
pir||G81382 probable oxidoreductase Cj0393c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB74229.1| (AL139075) putative oxidoreductase [Campylobacter jejuni]
Length = 448
Score = 418 bits (1075), Expect = e-116
Identities = 219/444 (49%), Positives = 297/444 (66%), Gaps = 5/444 (1%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
EFD ++IG G+SG A FY L+ Y+++K +A++EK + A ++S +NSQTIH G IETN
Sbjct: 5 EFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAATLNSKGTSNSQTIHCGDIETN 64
Query: 64 YTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFV 123
YT EKA+KV+ +A +Y L + QN +F QKMA+ VGD EC++MKKRYE FKE++
Sbjct: 65 YTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMALAVGDIECDYMKKRYEEFKELYP 124
Query: 124 GLEEFDKQKIKELEPNVILGAN-GIDRHENIIGHGYRKD--WSTMNFAKLSENFVEEALK 180
++ FDK KIK++EP V+LG + DR ENI G ++T++F K+S N +E+A K
Sbjct: 125 YIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGVESGEVFTTVDFGKMSINLIEQAQK 184
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
N V N ++ IEK++D + + + + +E +AK V+VNAG+++L LA M G+D
Sbjct: 185 QNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYHAKSVVVNAGAHSLYLAHKMNLGMDKS 244
Query: 241 CLPVAGSFYFVPD-LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLERN 299
C PVAGSFY LL GKVY VQNPKLPFAA+HGDPD + TR GPTAL +PKLER
Sbjct: 245 CWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAALHGDPDLLADMNTRFGPTALVIPKLERY 304
Query: 300 KCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKI 359
LK + + L+K V K+ F++ D IRNY+F N +FELP + K F+KDA+KI
Sbjct: 305 H-GLKSVPEFFEALKLDKTVLKVTFNMFKDATIRNYIFYNYLFELPFVDKSLFVKDAKKI 363
Query: 360 IPSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCLQNA 419
+PSL D+ YA GFG VRPQV+D+TK +L LGE I GI FNMTPSPGATSCL NA
Sbjct: 364 VPSLKASDIYYAKGFGGVRPQVIDKTKGELMLGEASITETPGIIFNMTPSPGATSCLGNA 423
Query: 420 LVDSQEIAAYLGESFELERFYKDL 443
D++ + YLG F ++F +L
Sbjct: 424 ERDAKLVCNYLGMEFNEDKFSSEL 447
>gb|EAA12921.1| (AAAB01008964) agCP11574 [Anopheles gambiae str. PEST]
Length = 413
Score = 83.6 bits (205), Expect = 4e-15
Identities = 112/441 (25%), Positives = 182/441 (40%), Gaps = 56/441 (12%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D V++GGG+ G A+ + R+AIVEK KLA S NS IH G Y
Sbjct: 2 YDIVVVGGGIVGTASAREILLRHPALRIAIVEKEPKLAFHQSG--HNSGVIHAG---IYY 56
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEI 121
P KAK + + +Y K + + + K+ + E E + Y+ S
Sbjct: 57 KPGSLKAKLCVEGLHLSYKYLDEKSIPYK---KVGKLIVATNPVEVERLNDLYQRSLANN 113
Query: 122 FVGLEEFDKQKIKELEPNVILGANGI-DRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
++ D+ KIKE+EP G I H I+ G + +F
Sbjct: 114 VPDVQVVDQAKIKEIEP-YCQGLKAIWSPHTGIVDWGLVTQYYGRDFK------------ 160
Query: 181 LKPNNQVFLNFKVKKIEKRNDT--YAVI--SEDAEEVYAKFVLVNAGSYALPLAQSMGYG 236
V++NFKV K + D Y ++ SE +E+ A+ +L G + +A+ G
Sbjct: 161 -AAGGDVYINFKVAKFSEAPDNLDYPIVVRSEKGDEIRARHILTCGGLQSDKIAEMTGCS 219
Query: 237 LDLGCLPVAGSFYFV-PD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALT 292
+P G + + PD ++RG +Y V +P+ PF VH P + G +GP A+
Sbjct: 220 AVPKIVPFRGEYLLLNPDKCHMVRGNIYPVPDPRFPFLGVHFTPR--MDGSVWLGPNAVL 277
Query: 293 MPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKF 352
+ E K W EL+ K+A + + + ++ + L +
Sbjct: 278 AFRREGYK-WSDINVPELIDALRFPGFIKMASKFVGAGMME--IARSALIPLQV------ 328
Query: 353 LKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLE-------LGEKKICTHKGITFN 405
++ QK IP + + + A G VR Q LD ++ GE + + +
Sbjct: 329 -RELQKFIP--DIHEYDVARGPAGVRAQALDNDGNLVDDFVFDHGTGE-SVLSKNILHCR 384
Query: 406 MTPSPGATSCLQNALVDSQEI 426
PSPGATS L A + + +I
Sbjct: 385 NAPSPGATSSLSIAKMIADKI 405
>ref|NP_522375.1| (NC_003296) PUTATIVE MALATE:QUINONE OXIDOREDUCTASE OXIDOREDUCTASE
PROTEIN [Ralstonia solanacearum]
emb|CAD17965.1| (AL646081) PUTATIVE MALATE:QUINONE OXIDOREDUCTASE OXIDOREDUCTASE
PROTEIN [Ralstonia solanacearum]
Length = 541
Score = 81.3 bits (199), Expect = 2e-14
Identities = 90/334 (26%), Positives = 150/334 (43%), Gaps = 44/334 (13%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D +++GGG+ L E + +VE+ +AQ SS+ N+ T H E NYT
Sbjct: 18 DVLLVGGGIMSSTLGVWLHELEPDWSMMMVERLDGVAQESSNGWNNAGTGHSALAELNYT 77
Query: 66 PEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGV------------------GDE 106
PEK+ K+ +S + +N+G Q F T ++ GV G++
Sbjct: 78 PEKSNGKIDIS----KAVEINEGFQVTRQFWTYQVKTGVLKNPRSFINSTPHMSFVWGED 133
Query: 107 ECEFMKKRYESFK--EIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWST 164
++KKRYE+ + +F G++ D ++ V L G DR + + + +
Sbjct: 134 NVRYLKKRYEALQASPLFRGMQFSD--DYDQISKWVPLMMEGRDRSQKVAA-TWMPVGTD 190
Query: 165 MNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVI-----SEDAEEVYAKFV 218
+NF +++ FV L+ +P + L+ +V+ I++ +D T+ V S D ++V KF+
Sbjct: 191 VNFGEITRQFV-GYLQSQPQFTLSLSSEVRDIKRNDDGTWRVSYVNLKSGDRQDVDTKFL 249
Query: 219 LVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAA 271
+ AG AL L Q+ G D PV GSF P+++ K Y + P +
Sbjct: 250 FIGAGGGALRLLQASGIPEARDFAAFPVGGSFLVTENPEVVNRHLAKAYGKASVGSPPMS 309
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERNKCWL 303
V VI GK I GP A K +N ++
Sbjct: 310 VPHLDTRVIDGKRIILFGPFATFSTKFLKNGSYM 343
>ref|NP_353835.1| (NC_003062) AGR_C_1485p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531510.1| (NC_003304) malate:quinone oxidoreductase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK86620.1| (AE008014) AGR_C_1485p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41826.1| (AE009048) malate:quinone oxidoreductase [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 595
Score = 81.3 bits (199), Expect = 2e-14
Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 47/318 (14%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IGGG+ L E + ++E+ +A SS+ N+ T H E NYT
Sbjct: 79 DVLLIGGGIMSATLGVWLRELEPTWSMQMLERLDGVALESSNGWNNAGTGHSALAELNYT 138
Query: 66 PE---------KAKKVRLSAYKTRQY----ALNKGLQN--EVIFETQKMAIGVGDEECEF 110
PE +A + S +RQ+ N L+N I T M+ GDE +
Sbjct: 139 PEDDNGNIKITQAVNINESFQISRQFWAWQVRNGVLKNPRSFINHTPHMSFVWGDENVAY 198
Query: 111 MKKRYESFK--EIFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNF 167
++KRY++ K +F G+E D ++IK+ P ++ G + + +G + + M F
Sbjct: 199 LEKRYQALKASPLFAGMEFSTDPEQIKKWVPLMMEGRDPSQK----LGATWSPLGTDMEF 254
Query: 168 AKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-----TYAVISEDAEEVY-AKFVLVN 221
+++ FV L+ N + +N +V I++ D TY DAE+V AKFV +
Sbjct: 255 GEITRQFVSH-LQSDQNFDLQVNSEVSDIQRNADGSWRVTYTNTKTDAEQVVDAKFVFIG 313
Query: 222 AGSYALPLAQSMGY--GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAV 279
AG AL L Q G D PV GSF +NP + + A
Sbjct: 314 AGGGALHLLQMSGVPEADDYAGFPVGGSFLI-----------NENPDVTMQHL-----AK 357
Query: 280 IKGKTRIGPTALTMPKLE 297
GK +G +++P L+
Sbjct: 358 AYGKASVGSPPMSVPHLD 375
>ref|NP_079160.1| (NM_024884) hypothetical protein FLJ12618 [Homo sapiens]
ref|XP_043719.1| (XM_043719) hypothetical protein FLJ12618 [Homo sapiens]
dbj|BAB14174.1| (AK022680) unnamed protein product [Homo sapiens]
Length = 463
Score = 81.3 bits (199), Expect = 2e-14
Identities = 120/458 (26%), Positives = 199/458 (43%), Gaps = 69/458 (15%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
FD VI+GGG+ G A+ L + ++EK LA + NS IH G Y
Sbjct: 49 FDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTG--HNSGVIHSG---IYY 103
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
PE KAK A +Y KG+ + + K+ + V EE ++ YE +
Sbjct: 104 KPESLKAKLCVQGAALLYEYCQQKGISYK---QCGKLIVAVEQEEIPRLQALYEKGLQNG 160
Query: 123 V-GLEEFDKQKIKELEPNVILGANGID-RHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
V GL ++ IK+ EP G ID H I+ YR+ ++FA ++F E
Sbjct: 161 VPGLRLIQQEDIKKKEP-YCRGLMAIDCPHTGIV--DYRQ--VALSFA---QDFQE---- 208
Query: 181 LKPNNQVFLNFKVKKIEKRNDT---------YAVISED--AEEVYAKFVLVNAGSYALPL 229
V NF+VK IE ++ Y ++ ++ EE+ ++V+ AG Y+ +
Sbjct: 209 --AGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRI 266
Query: 230 AQSMGYGLDLGCLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTR 285
++ G D +P G + + L++G +Y V + + PF VH P + G
Sbjct: 267 SELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPR--MDGSIW 324
Query: 286 IGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELP 345
+GP A+ K E + + + +++ + +N + K+A S Y M ++
Sbjct: 325 LGPNAVLAFKREGYRPF-DFSATDVMDIIINSGLIKLASQNFS------YGVTEM-YKAC 376
Query: 346 IIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLE-------LGEKKICT 398
+G +K QK IP +++ D+ G VR Q LDR +E +G+
Sbjct: 377 FLGAT--VKYLQKFIPEITISDI--LRGPAGVRAQALDRDGNLVEDFVFDAGVGD---IG 429
Query: 399 HKGITFNMTPSPGATSCLQNALVDSQEIAAYLGESFEL 436
++ + PSP ATS ++ S IA + + FEL
Sbjct: 430 NRILHVRNAPSPAATS----SIAISGMIADEVQQRFEL 463
>ref|NP_114214.1| (NC_002759) unknown [Pseudomonas syringae pv. maculicola]
gb|AAK49556.1|AF359557_21 (AF359557) unknown [Pseudomonas syringae pv. maculicola]
Length = 397
Score = 81.3 bits (199), Expect = 2e-14
Identities = 107/423 (25%), Positives = 175/423 (41%), Gaps = 49/423 (11%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M +D +IGGG+ G AT L E + ++EK LAQ + NS IH G
Sbjct: 1 MLYDFCVIGGGIVGLATAMRLLEVYPGCSLVLMEKELSLAQHQTG--HNSGVIHAG---V 55
Query: 63 NYTPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
Y P KAK A T+ + + EV K+ + E + E K+
Sbjct: 56 YYAPGSFKAKLCTQGAELTKSFCTEHSIPFEV---CGKLVVASNKESFARLGSLEERAKQ 112
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
+ E D Q+++ EPNV I+ +G ++ N + +A
Sbjct: 113 NGLTTERLDAQELRRREPNVAGEGALFVTSSGIVDYGV--------VSRSMANVIAQA-- 162
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
Q+ L V IE+ + ++ SE + AK ++V AG + LA G +D
Sbjct: 163 ---GAQILLGQTVVSIEEYGNHVSIASERL-SLSAKKLVVCAGLQSDRLATLAGLKVDCR 218
Query: 241 CLPVAGSFY----FVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKL 296
+P G +Y + D ++ +Y V LPF +H +I G +GP A+
Sbjct: 219 IVPFRGEYYRLSSHLDDSIKHLIYPVPEAGLPFLGIH--LTRMIGGGVTVGPNAVLGLSR 276
Query: 297 ERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD--KEIRNYVFKNMVFELPIIGKRKFLK 354
E + + + + L+ L +K+ ++ E++N +FKN +L+
Sbjct: 277 EGYRKFAFN-ARDFLEYSLYPGFWKLVGKNINSGIAEMKNAIFKN-----------NYLE 324
Query: 355 DAQKIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGAT 413
QK PSL +EDLE Y G +R Q + R+ ++ + T + + PSP AT
Sbjct: 325 QCQKYFPSLKMEDLEPYEAG---IRAQAVTRSGEFVD-DFLFVQTERMLHVCNAPSPAAT 380
Query: 414 SCL 416
S +
Sbjct: 381 SAI 383
>ref|XP_127035.1| (XM_127035) similar to hypothetical protein FLJ12618 [Mus musculus]
gb|AAH16226.1|AAH16226 (BC016226) Similar to hypothetical protein FLJ12618 [Mus musculus]
Length = 464
Score = 80.9 bits (198), Expect = 3e-14
Identities = 114/447 (25%), Positives = 186/447 (41%), Gaps = 65/447 (14%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
FD VI+GGG+ G A+ TL + +VEK LA + NS IH G Y
Sbjct: 50 FDIVIVGGGIVGLASARTLILKHPGLSIGVVEKEKDLALHQTG--HNSGVIHSG---IYY 104
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFKEI 121
PE KAK A +Y KG+ + K+ + V EE ++ YE +
Sbjct: 105 KPESLKAKLCVEGAALIYEYCNLKGIPYR---QCGKLIVAVEQEEIPRLQALYERGLQNG 161
Query: 122 FVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKL 181
GL ++ IK+ EP G ID I +N+ +++ +F ++
Sbjct: 162 VEGLRLIQQEDIKKKEP-YCRGLMAIDCPYTGI----------VNYQQVALSFAQDF--Q 208
Query: 182 KPNNQVFLNFKVKKIE--KRNDT---------YAVISEDAEEVYAKFVLVNAGSYALPLA 230
+ + +F+VK IE K N + AV + +E+ ++V+ AG Y+ ++
Sbjct: 209 EAGGSILRDFEVKGIEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYSDRIS 268
Query: 231 QSMGYGLDLGCLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRI 286
+ G D +P G + + L++G +Y V + + PF VH P + G +
Sbjct: 269 ELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPR--LDGTIWL 326
Query: 287 GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPI 346
GP A+ K E + + D+ + + K F N VF++ + +
Sbjct: 327 GPNAVLAFKREGYR------PFDFDARDVMEVILKSGF--------INLVFQHFSYGVNE 372
Query: 347 IGKRKFL----KDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLE----LGEKKICT 398
+ K FL K QK IP +++ D+ G VR Q LDR +E G
Sbjct: 373 MYKACFLSETVKHLQKFIPEITISDV--LRGPAGVRAQALDRDGNLVEDFVFDGGTGEIA 430
Query: 399 HKGITFNMTPSPGATSCLQNALVDSQE 425
+ + PSP ATS L + + ++E
Sbjct: 431 DRVLHVRNAPSPAATSSLAISRMIAEE 457
>ref|NP_232547.1| (NC_002506) transcriptional regulator, putative [Vibrio cholerae]
pir||E82496 probable transcription regulator VCA0147 [imported] - Vibrio
cholerae (group O1 strain N16961)
gb|AAF96060.1| (AE004355) transcriptional regulator, putative [Vibrio cholerae]
Length = 403
Score = 77.0 bits (188), Expect = 4e-13
Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 42/376 (11%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M +D VI+GGG+ G +T + L K V ++EK + ++ + NS IH G
Sbjct: 1 MTYDYVIVGGGIVGVSTGWQLKRRYPEKSVLLIEKEAGFSRHQTG--HNSGVIHAG---V 55
Query: 63 NYTPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKE 120
Y P KA + +T + + E K+ + ++E E M Y+ +
Sbjct: 56 YYAPGSLKADFCKRGVERTLAFCAQHNIPVE---NCGKLLVATNEQELERMHALYDRCLQ 112
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
+ +E+ D ++K EPN+ +G K S +N+ ++E E ++
Sbjct: 113 NQIDVEKLDAAQLKLAEPNI-----------RGLGAILVKATSIVNYRLVTEKMAEAFMQ 161
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEE---VYAKFVLVNAGSYALPLAQSMGYGL 237
L V + +V +E+ + + + + AKF++ +G A L + +G
Sbjct: 162 L--GGDVKIGTEVVGLEETPSSITLTCQQKNQRVSYQAKFLVTCSGLMADRLTKMLGLPT 219
Query: 238 DLGCLPVAGSFYFVP----DLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTM 293
D +P G +Y + ++R +Y + +P+LPF VH +I G +GP A+
Sbjct: 220 DFQIIPYRGEYYRLAPKHNQVVRHLIYPIPDPELPFLGVH--LTRMIDGCVTVGPNAVQG 277
Query: 294 PKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFL 353
K E W +SL D+ + V F +S K + MV K +L
Sbjct: 278 FKREGYGKW--NVSLR----DVWEMVCFPGFWKVSAKHFKT----GMVEMKNSWWKAGYL 327
Query: 354 KDAQKIIPSLSLEDLE 369
+ +K PS+ L DLE
Sbjct: 328 QLVRKYCPSIELTDLE 343
>ref|NP_416714.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P33940|MQO_ECOLI Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor])
(MQO)
pir||H64990 yojH protein - Escherichia coli (strain K-12)
dbj|BAA15993.1| (D90850) ORF_ID:o372#5~similar to [SwissProt Accession Number
P33940] [Escherichia coli]
gb|AAC75270.1| (AE000310) orf, hypothetical protein [Escherichia coli K12]
Length = 548
Score = 76.6 bits (187), Expect = 5e-13
Identities = 109/449 (24%), Positives = 193/449 (42%), Gaps = 56/449 (12%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E D ++IGGG+ L E + +VE+ +AQ SS+ N+ T H +E N
Sbjct: 31 ETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELN 90
Query: 64 YTP---------EKAKKVRLSAYKTRQY---ALNKGL---QNEVIFETQKMAIGVGDEEC 108
YTP EKA + + +RQ+ + +G+ I M+ G++
Sbjct: 91 YTPQNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNV 150
Query: 109 EFMKKRYESFKE--IFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWST- 164
F++ RY + ++ +F G+ D +IKE P V+ G D + + R + T
Sbjct: 151 NFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVM---EGRDPQQKVA--ATRTEIGTD 205
Query: 165 MNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVISED-----AEEVYAKFV 218
+N+ +++ + +L+ K N + L+ +V+ +++ +D T+ V D A+ + AKFV
Sbjct: 206 VNYGEITRQLI-ASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFV 264
Query: 219 LVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAA 271
+ AG AL L Q G D PV G F PD++ KVY + P +
Sbjct: 265 FIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMS 324
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD 329
V V+ GK + GP A K +N G +L+ +V + + +
Sbjct: 325 VPHIDTRVLDGKRVVLFGPFATFSTKFLKN-----GSLWDLMSSTTTSNVMPMMHVGLDN 379
Query: 330 KEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRK- 388
++ Y+ + ++ + + ++ P ED G+ R Q++ R K
Sbjct: 380 FDLVKYLVSQV-----MLSEEDRFEALKEYYPQAKKEDWRLWQA-GQ-RVQIIKRDAEKG 432
Query: 389 --LELGEKKICTHKG-ITFNMTPSPGATS 414
L LG + + +G I + SPGA++
Sbjct: 433 GVLRLGTEVVSDQQGTIAALLGASPGAST 461
>ref|NP_486866.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB74525.1| (AP003591) ORF_ID:alr2826~hypothetical protein [Nostoc sp. PCC
7120]
Length = 404
Score = 76.6 bits (187), Expect = 5e-13
Identities = 112/449 (24%), Positives = 179/449 (38%), Gaps = 67/449 (14%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D I+GGG+ G +T L + R+ ++EK S+ A NS IH G Y
Sbjct: 2 YDFTIVGGGIVGLSTGMALGKRYPQARILVLEKESQWA--FHQTGNNSGVIHSG---IYY 56
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
P KAK R ++ + G+ +EV K+ + ++E ++ Y+ E
Sbjct: 57 KPGSFKAKFCRDGRDSMVKFCQDYGIDHEV---CGKVIVATNEQELPRLENLYQRGLENG 113
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+++ +++KE+EP V A GI + G +N+ ++ +VE L +
Sbjct: 114 TQVQKISAEEVKEIEPYVKCVA-GI----RVFSTG------IVNYKQVCLKYVE--LIQQ 160
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
+ LN KV KI + + V+ + +FV+ AG ++ +A+ G +
Sbjct: 161 QGGDLRLNTKVLKISPSGNNH-VLETNNGNFETRFVINCAGLHSDRIAKLGGVKPSAKIV 219
Query: 243 PVAGSFY-FVPD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLER 298
P G +Y P+ L++ +Y V NP+ PF VH +I G GP A+ K E
Sbjct: 220 PFRGEYYELTPEKRYLVKTLIYPVPNPEFPFLGVHF--TRMIDGSVHAGPNAVLSLKREG 277
Query: 299 NKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNY----------VFKNMVFELPIIG 348
K K FDL E+ Y + + +
Sbjct: 278 YK--------------------KTDFDLRDFAEVMTYPGFWKLAGKHADEGIQEIIRSFS 317
Query: 349 KRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTP 408
K F + Q +IP + EDL H VR Q L KL + I P
Sbjct: 318 KAAFTRSLQNLIPEVQAEDLVPTH--AGVRAQAL-MDDGKLVDDFYIVPGENSIHVCNAP 374
Query: 409 SPGATSCLQNALVDSQEIAAYLGESFELE 437
SP ATS L+ + IAA + + LE
Sbjct: 375 SPAATSSLE----IGKAIAAQIPQQSHLE 399
>ref|NP_311126.1| (NC_002695) putative malate:quinone oxidoreductase [Escherichia
coli O157:H7]
dbj|BAB36522.1| (AP002560) putative malate:quinone oxidoreductase [Escherichia coli
O157:H7]
Length = 548
Score = 75.9 bits (185), Expect = 9e-13
Identities = 109/449 (24%), Positives = 193/449 (42%), Gaps = 56/449 (12%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E D ++IGGG+ L E + +VE+ +AQ SS+ N+ T H +E N
Sbjct: 31 ETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELN 90
Query: 64 YTP---------EKAKKVRLSAYKTRQY---ALNKGL---QNEVIFETQKMAIGVGDEEC 108
YTP EKA + + +RQ+ + +G+ I M+ G++
Sbjct: 91 YTPQNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNV 150
Query: 109 EFMKKRYESFKE--IFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWST- 164
F++ RY + ++ +F G+ D +IKE P V+ G D + + R + T
Sbjct: 151 NFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVM---EGRDPQQKVA--ATRTEIGTD 205
Query: 165 MNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVISED-----AEEVYAKFV 218
+N+ +++ + +L+ K N + L+ +V+ +++ +D T+ V D A+ + AKFV
Sbjct: 206 VNYGEITRQLI-ASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFV 264
Query: 219 LVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAA 271
+ AG AL L Q G D PV G F PD++ KVY + P +
Sbjct: 265 FIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMS 324
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD 329
V V+ GK + GP A K +N G +L+ +V + + +
Sbjct: 325 VPHIDTRVLDGKRVVLFGPFATFSTKFLKN-----GSLWDLMSSTTTSNVMPMMHVGLDN 379
Query: 330 KEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRK- 388
++ Y+ + ++ + + ++ P ED G+ R Q++ R K
Sbjct: 380 FDLVKYLVSQV-----MLSEEDRFEALKEYYPQAKKEDWRLWQA-GQ-RVQIIKRDADKG 432
Query: 389 --LELGEKKICTHKG-ITFNMTPSPGATS 414
L LG + + +G I + SPGA++
Sbjct: 433 GVLRLGTEVVSDQQGTIAALLGASPGAST 461
>ref|NP_288790.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG57345.1|AE005453_2 (AE005453) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 548
Score = 75.5 bits (184), Expect = 1e-12
Identities = 109/449 (24%), Positives = 193/449 (42%), Gaps = 56/449 (12%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E D ++IGGG+ L E + +VE+ +AQ SS+ N+ T H +E N
Sbjct: 31 ETDVLLIGGGIMSATLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELN 90
Query: 64 YTP---------EKAKKVRLSAYKTRQY---ALNKGL---QNEVIFETQKMAIGVGDEEC 108
YTP EKA + + +RQ+ + +G+ I M+ G++
Sbjct: 91 YTPQNADGSISIEKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNV 150
Query: 109 EFMKKRYESFKE--IFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWST- 164
F++ RY + ++ +F G+ D +IKE P V+ G D + + R + T
Sbjct: 151 NFLRARYAALQQSSLFRGMRYSEDHAQIKEWAPLVM---EGRDPQQKVA--ATRTEIGTD 205
Query: 165 MNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVISED-----AEEVYAKFV 218
+N+ +++ + +L+ K N + L+ +V+ +++ +D T+ V D A+ + AKFV
Sbjct: 206 VNYGEITRQLI-ASLQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFV 264
Query: 219 LVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAA 271
+ AG AL L Q G D PV G F PD++ KVY + P +
Sbjct: 265 FIGAGGAALKLLQESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMS 324
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD 329
V V+ GK + GP A K +N G +L+ +V + + +
Sbjct: 325 VPHIDTRVLDGKRVVLFGPFATFSTKFLKN-----GSLWDLMSSTTTSNVMPMMHVGLDN 379
Query: 330 KEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRK- 388
++ Y+ + ++ + + ++ P ED G+ R Q++ R K
Sbjct: 380 FDLVKYLVSQV-----MLSEEDRXEALKEYYPQAKKEDWRLWQA-GQ-RVQIIKRDADKG 432
Query: 389 --LELGEKKICTHKG-ITFNMTPSPGATS 414
L LG + + +G I + SPGA++
Sbjct: 433 GVLRLGTEVVSDQQGTIAALLGASPGAST 461
>ref|NP_541269.1| (NC_003318) AMINOBUTYRALDEHYDE DEHYDROGENASE [Brucella melitensis]
gb|AAL53533.1| (AE009667) AMINOBUTYRALDEHYDE DEHYDROGENASE [Brucella melitensis]
Length = 410
Score = 75.1 bits (183), Expect = 2e-12
Identities = 114/450 (25%), Positives = 188/450 (41%), Gaps = 55/450 (12%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
++D +IGGG+ G AT + E R+ ++EK S LA+ + NS IH G
Sbjct: 3 DYDYCVIGGGIVGLATAKAVQEAEPGARIIVLEKESGLARHQTG--HNSGVIHAG---IY 57
Query: 64 YTPE--KAKKVRLSAYKTRQYALNKGLQNEVIFET-QKMAIGVGDEECEFMKKRYESFKE 120
Y P KA+ R A T+ + Q + FE+ K+ + E E M+ +
Sbjct: 58 YQPGSLKARLCRAGAQATKAFC----KQYSIPFESCGKLLVATSALEMERMEALARRAVQ 113
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
+ D+Q +++ EP + + +G + +++AK+S E
Sbjct: 114 NNIEFSHLDQQALRKAEPAI-----------SGLGALFVPATGIVDYAKVSRAMAAEI-- 160
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
++ V LN V I + V+S E V A ++ AG + +A+ G +
Sbjct: 161 VERGGIVRLNSPVTAIHEDEKGVEVVS-GGETVRASKLVACAGLQSDRIARLAGLDITHR 219
Query: 241 CLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKL 296
+P G +Y +P ++R +Y + +P LPF +H I G +GP A+
Sbjct: 220 IVPFRGEYYTLPQTRAGIVRHLIYPIPDPDLPFLGIH--LTRTIDGGVTVGPNAVLGFSR 277
Query: 297 ERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYV--FKNMVFELPIIGKRKFLK 354
E + KG D+ F F M+ K R+ + F N + ++LK
Sbjct: 278 EG---YAKG---SFHPGDIADMSFFAGFWKMAMKNWRSAISEFGNST------SRARYLK 325
Query: 355 DAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATS 414
+K PSL L DL A G G VLD + K+ T + + PSP ATS
Sbjct: 326 QCRKYCPSLELSDLG-APGAGIRAQAVLDDGTLVHDFLFKE--TERMLHVCNAPSPAATS 382
Query: 415 CLQNALVDSQEIAAYLGESFELERFYKDLS 444
+ + +Q++ LG + + E KD+S
Sbjct: 383 SIPIGRMIAQKL---LGINLQAE---KDIS 406
>ref|NP_244828.1| (NC_002570) malate/quinone oxidoreductase [Bacillus halodurans]
pir||T44345 hypothetical protein [imported] - Bacillus halodurans
dbj|BAA75375.1| (AB013369) unknown [Bacillus halodurans]
dbj|BAB07679.1| (AP001520) malate/quinone oxidoreductase [Bacillus halodurans]
Length = 500
Score = 73.6 bits (179), Expect = 5e-12
Identities = 113/461 (24%), Positives = 188/461 (40%), Gaps = 80/461 (17%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IG G+ L E + + EK + + SS+ N+ T H E NYT
Sbjct: 9 DVILIGAGIMSATLGSLLKELKPEWEIKVFEKLANAGEESSNEWNNAGTGHAALCELNYT 68
Query: 66 PE---------KAKKVRLSAYKTRQ---YALNKGL---QNEVIFETQKMAIGVGDEECEF 110
E KA K+ +RQ Y +++ L + I M++ G++ +
Sbjct: 69 AEKSDGTIDISKAVKINEQFQISRQFWAYLVSQNLISNPQDFIMPIPHMSLVQGEDNVAY 128
Query: 111 MKKRYESFKEI--FVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWST-MN 166
+KKR+++ I F G+E D +K+KE P V+ G R N + D T +N
Sbjct: 129 LKKRFKALSNIPLFEGMEFSNDPEKLKEWIPLVMEG-----RTSNEPIAATKIDSGTDVN 183
Query: 167 FAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND------TYAVISEDAEEVYAKFVLV 220
F L+ E LK + N +V VK I++ +D + S E A FV +
Sbjct: 184 FGALTRMLFEH-LK-EQNVEVHYKHSVKDIKRTSDGSWSVKVQEIESGTIEYHTANFVFI 241
Query: 221 NAGSYALPLAQSMGY--GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDA 278
G +LPL Q G ++G PV+G F NP+ V A
Sbjct: 242 GGGGGSLPLLQKTGIPESKNIGGFPVSGLF-----------MVCNNPE-----VVEQHHA 285
Query: 279 VIKGKTRIGPTALTMPKLER----NKCWL-----KGISLELLKMDLNKD---------VF 320
+ GK ++G +++P L+ NK L G S + LK N D VF
Sbjct: 286 KVYGKAKVGAPPMSVPHLDTRYIDNKKSLLFGPFAGFSPKFLKTGSNFDLIGSVKPYNVF 345
Query: 321 KIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQ 380
+ + + Y+ + + ++ K K + + ++ +P+ ED + R Q
Sbjct: 346 TMLAAGAKEMSLTKYLIQQV-----MLSKEKRMAELREFMPNAKSEDWDIV--VAGQRVQ 398
Query: 381 VLDRT----KRKLELGEKKICTHKG-ITFNMTPSPGATSCL 416
V+ T K L+ G + + + G I + SPGA++ +
Sbjct: 399 VIKDTEAGGKGTLQFGTEVVSSADGSIAALLGASPGASTAV 439
>gb|AAH06117.1|AAH06117 (BC006117) Similar to hypothetical protein FLJ12618 [Homo sapiens]
Length = 441
Score = 73.6 bits (179), Expect = 5e-12
Identities = 99/383 (25%), Positives = 168/383 (43%), Gaps = 53/383 (13%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
FD VI+GGG+ G A+ L + ++EK LA + NS IH G Y
Sbjct: 49 FDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTG--HNSGVIHSG---IYY 103
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
PE KAK A +Y KG+ + + K+ + V EE ++ YE +
Sbjct: 104 KPESLKAKLCVQGAALLYEYCQQKGISYK---QCGKLIVAVEQEEIPRLQALYEKGLQNG 160
Query: 123 V-GLEEFDKQKIKELEPNVILGANGID-RHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
V GL ++ IK+ EP G ID H I+ YR+ ++FA ++F E
Sbjct: 161 VPGLRLIQQEDIKKKEP-YCRGLMAIDCPHTGIV--DYRQ--VALSFA---QDFQE---- 208
Query: 181 LKPNNQVFLNFKVKKIEKRNDT---------YAVISED--AEEVYAKFVLVNAGSYALPL 229
V NF+VK IE ++ Y ++ ++ EE+ ++V+ AG Y+ +
Sbjct: 209 --AGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRI 266
Query: 230 AQSMGYGLDLGCLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTR 285
++ G D +P G + + L++G +Y V + + PF VH P + G
Sbjct: 267 SELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPR--MDGSIW 324
Query: 286 IGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELP 345
+GP A+ K E + + + +++ + +N + K+A S Y M ++
Sbjct: 325 LGPNAVLAFKREGYRPF-DFSATDVMDIIINSGLIKLASQNFS------YGVTEM-YKAC 376
Query: 346 IIGKRKFLKDAQKIIPSLSLEDL 368
+G +K QK IP +++ D+
Sbjct: 377 FLGAT--VKYLQKFIPEITISDI 397
>ref|NP_275084.1| (NC_003112) malate:quinone oxidoreductase [Neisseria meningitidis
MC58]
pir||A81006 probable malate dehydrogenase (acceptor) (EC 1.1.99.16) NMB2096
[imported] - Neisseria meningitidis (group B strain
MD58)
gb|AAF42413.1| (AE002559) malate:quinone oxidoreductase [Neisseria meningitidis
MC58]
Length = 488
Score = 72.8 bits (177), Expect = 8e-12
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 50/324 (15%)
Query: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
M+ D V++GGG+ L E + ++E+ +A SS+A N+ T H
Sbjct: 1 MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALESSNAWNNAGTGHSALC 60
Query: 61 ETNYT---------PEKAKKVRLSAYKTRQY-----ALNKGLQNEVIFETQKMAIGVGDE 106
E NY P +A + + +RQ+ A K N I M++ + ++
Sbjct: 61 ELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLEDNSFINAVPHMSLVMNED 120
Query: 107 ECEFMKKRYESFK--EIFVGLE-EFDKQKIKELEPNVILGANGIDRHEN-IIGHGYRKDW 162
C +++KRY++FK ++F +E D+ KI + P ++ G R EN + Y +
Sbjct: 121 HCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG-----RDENQPVAANYSAEG 175
Query: 163 STMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVIS-------EDAEEVYA 215
+ ++F +L+ V + L+ K F N V+ I++ +D V+ + +
Sbjct: 176 TDVDFGRLTRQMV-KYLQGKGVKTEF-NRHVEDIKRESDGAWVLKTADTRNPDGQLTLRT 233
Query: 216 KFVLVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVH 273
+F+ + AG AL L Q G G G PV+G F+ +N A H
Sbjct: 234 RFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFF-------------RNSNPETAEQH 280
Query: 274 GDPDAVIKGKTRIGPTALTMPKLE 297
+A + G+ +G +++P L+
Sbjct: 281 ---NAKVYGQASVGAPPMSVPHLD 301
>ref|NP_283166.1| (NC_003116) probable malate:quinone oxidoreductase [Neisseria
meningitidis Z2491]
pir||B82029 probable malate dehydrogenase (acceptor) (EC 1.1.99.16) NMA0333
[imported] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB83637.1| (AL162752) probable malate:quinone oxidoreductase [Neisseria
meningitidis Z2491]
Length = 488
Score = 72.8 bits (177), Expect = 8e-12
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 50/324 (15%)
Query: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
M+ D V++GGG+ L E + ++E+ +A SS+A N+ T H
Sbjct: 1 MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALESSNAWNNAGTGHSALC 60
Query: 61 ETNYT---------PEKAKKVRLSAYKTRQY-----ALNKGLQNEVIFETQKMAIGVGDE 106
E NY P +A + + +RQ+ A K N I M++ + ++
Sbjct: 61 ELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLEDNSFINAVPHMSLVMNED 120
Query: 107 ECEFMKKRYESFK--EIFVGLE-EFDKQKIKELEPNVILGANGIDRHEN-IIGHGYRKDW 162
C +++KRY++FK ++F +E D+ KI + P ++ G R EN + Y +
Sbjct: 121 HCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG-----RDENQPVAANYSAEG 175
Query: 163 STMNFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVIS-------EDAEEVYA 215
+ ++F +L+ V + L+ K F N V+ I++ +D V+ + +
Sbjct: 176 TDVDFGRLTRQMV-KYLQGKGVKTEF-NRHVEDIKRESDGAWVLKTADTRNPDGQLTLRT 233
Query: 216 KFVLVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVH 273
+F+ + AG AL L Q G G G PV+G F+ +N A H
Sbjct: 234 RFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFF-------------RNSNPETAEQH 280
Query: 274 GDPDAVIKGKTRIGPTALTMPKLE 297
+A + G+ +G +++P L+
Sbjct: 281 ---NAKVYGQASVGAPPMSVPHLD 301
>ref|NP_503730.1| (NM_071329) Y45G12B.3.p [Caenorhabditis elegans]
gb|AAF60576.2| (AC006768) Hypothetical protein Y45G12B.3 [Caenorhabditis elegans]
Length = 433
Score = 72.0 bits (175), Expect = 1e-11
Identities = 113/447 (25%), Positives = 181/447 (40%), Gaps = 70/447 (15%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
++D VI+GGG+ GCAT L +VA++EK +LA S NS IH G
Sbjct: 25 KYDLVIVGGGIVGCATARQLLIEKPQLKVALIEKEKELAVHQSG--HNSGVIHAG---IY 79
Query: 64 YTPEKAK-KVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECE-----FMKKRYES 117
YTP K K+ + +K + +T K+ + V EE F + +
Sbjct: 80 YTPGSLKAKLCVEGLDLSYEFFDK--EKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNG 137
Query: 118 FKEIFVGLEEFDKQKIKELEPNVILGANGI-DRHENIIGHGYRKDWSTMNFAKLSENFVE 176
++I E D KI ELEP+ G + H I+ GY +++ F E
Sbjct: 138 CRDI----EMIDSSKITELEPH-CRGLKALWSPHTGIVDWGY-----------VTKRFGE 181
Query: 177 EALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVN----AGSYALPLAQS 232
+ K +++ ++ ++KI +D I + A+F N AG + +A
Sbjct: 182 DF--EKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQSDRVAAL 239
Query: 233 MGYGLDLGCLPVAGSFYFVP----DLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGP 288
G D +P G + + L++ +Y V +P+ PF VH P + G +GP
Sbjct: 240 SGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPR--MNGDIWLGP 297
Query: 289 TALTMPKLERNKCWLKGIS-LELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPII 347
A+ K E G S + DL + +S ++ V K+ F + +
Sbjct: 298 NAVLAYKRE-------GYSYFSISPSDL--------LESLSYSGMQKLVKKHFTFGIKEL 342
Query: 348 GKRKFL----KDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKL-----ELGEKKICT 398
+ ++ K Q+ IP L L D+ G VR Q +D + + G K+
Sbjct: 343 YRGVWIAAQVKQLQRFIPELKLSDV--TRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSP 400
Query: 399 HKGITFNMTPSPGATSCLQNALVDSQE 425
N PSP ATS L A + + E
Sbjct: 401 LLMHVRN-APSPAATSSLAIAKMITSE 426
>ref|NP_656840.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 500
Score = 71.2 bits (173), Expect = 2e-11
Identities = 113/457 (24%), Positives = 194/457 (41%), Gaps = 62/457 (13%)
Query: 1 MSMEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
M + D ++IG G+ L E + + + EK + + SS+ N+ T H
Sbjct: 4 MQQKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHSALC 63
Query: 61 ETNYTPE---------KAKKVRLSAYKTRQY----ALNKGLQN--EVIFETQKMAIGVGD 105
E NYT E KA KV +RQ+ +K ++N + I M++ G+
Sbjct: 64 ELNYTSEKSDGSIDISKAVKVNEQFQLSRQFWAYLVKSKLIRNPQDFIMPLPHMSLVQGE 123
Query: 106 EECEFMKKRYESFKE--IFVGLEEFD-KQKIKELEPNVILGANGIDRHENIIGHGYRKDW 162
+ EF+K R+E+ + +F G+E D + +K+ P ++ G R N + D
Sbjct: 124 KNVEFLKNRFEALSKNPLFQGMEFSDAPETLKKWLPLIMEG-----RTSNEPMAATKIDS 178
Query: 163 ST-MNFAKLSENFVEEALKLKPNNQVFLNFK--VKKIEK-RNDTYAVISED-----AEEV 213
T +NF L+ + + LK K V LN+K V+ I++ +N + V D E
Sbjct: 179 GTDVNFGALT-RMLFDYLKTK---DVELNYKHSVENIKRTKNGLWEVKVHDMNSGKIEHH 234
Query: 214 YAKFVLVNAGSYALPLAQSMGY--GLDLGCLPVAGSFYF-----VPDLLRGKVY-TVQNP 265
AKFV + G +LPL Q G +G PV+G F V + KVY +
Sbjct: 235 TAKFVFIGGGGGSLPLLQKTGIPESKHIGGFPVSGLFMVCKNQKVVEQHHAKVYGKAKVG 294
Query: 266 KLPFAAVHGDPDAVIKGKTRI-GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAF 324
P + H D + K + GP A PK + G +L+L+ +V +
Sbjct: 295 APPMSVPHLDTRYIDNKKALLFGPFAGFSPKFLKT-----GSNLDLIGSVKPNNVLTMLA 349
Query: 325 DLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDR 384
+ + + Y+ + + ++ K +++ ++ IP+ ED + R QV+
Sbjct: 350 AGVKEMGLTKYLIQQV-----MLSHEKRMEELREFIPNAKSEDWDIV--VAGQRVQVIKD 402
Query: 385 T----KRKLELGEKKICTHKG-ITFNMTPSPGATSCL 416
T K L+ G + + G I + SPGA++ +
Sbjct: 403 TDAGGKGTLQFGTEVVSAADGSIAALLGASPGASTAV 439
>ref|NP_436641.1| (NC_003078) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC48501.1| (AL603642) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 426
Score = 69.7 bits (169), Expect = 7e-11
Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 66/383 (17%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D IIGGG+ G AT L E + ++EK +LA+ + NS IH G Y
Sbjct: 13 YDYCIIGGGIVGLATAMALQERMGGASIVLLEKERELARHQTGH--NSGVIHAGIY---Y 67
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFET-QKMAIGVGDEECEFMKKRYESFKEI 121
P KAK R A T+++ G+ FET K+ + D E E M+ E ++
Sbjct: 68 APGSLKAKLCREGAEATKEFCTGNGIS----FETCGKLLVATNDAEIERMESLEERAQQN 123
Query: 122 FVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKL 181
+ K +++ EPN I G + + H I D+S + A + E +++
Sbjct: 124 GIEYTRLSKSQLRSDEPN-IAGLSALLVHATGI-----VDYSAVCRA------MAERIEV 171
Query: 182 KPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGC 241
+ ++ + I + + + S + A+ ++ AG + +A G +D
Sbjct: 172 R-GGEIRCGVEATAIAEEDGGVRIASATGR-IEARRLIACAGLQSDRIALMAGLSIDHRI 229
Query: 242 LPVAGSFYFVP----DLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLE 297
+P G +Y +P + R +Y + +P LPF +H I G +GP A+
Sbjct: 230 VPFRGEYYVLPASKAGVTRRLIYPIPDPNLPFLGIH--LTRTIDGGMTVGPNAV------ 281
Query: 298 RNKCWLKGISLELLKMDLNKDVFKIA----------FDLMSDKEIRNYV--FKNMVFELP 345
L + K FK A F M+ K R+ + F N
Sbjct: 282 ----------LGFAREGYPKGSFKAADVANMAAFPGFWKMAAKNWRSAITEFANSA---- 327
Query: 346 IIGKRKFLKDAQKIIPSLSLEDL 368
+ ++L++ +K PSL+++DL
Sbjct: 328 --SRFRYLRECRKYCPSLTIDDL 348
>ref|NP_252142.1| (NC_002516) malate:quinone oxidoreductase [Pseudomonas aeruginosa]
pir||C83213 malate:quinone oxidoreductase PA3452 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06840.1|AE004766_1 (AE004766) malate:quinone oxidoreductase [Pseudomonas aeruginosa]
Length = 523
Score = 69.7 bits (169), Expect = 7e-11
Identities = 89/330 (26%), Positives = 142/330 (42%), Gaps = 43/330 (13%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IGGG+ L+E + +VE+ K+A+ SS+ N+ T H E NYT
Sbjct: 28 DVLLIGGGIMSATLGTYLNELEPGWTIEMVERLDKVAEESSNGWNNAGTGHSAFCELNYT 87
Query: 66 PEKA-------KKVRLS----------AYKTRQYALNKGLQNEVIFETQKMAIGVGDEEC 108
E A K V ++ AY+ + LN I M+ GD+
Sbjct: 88 SEAADGSMDISKAVAINENFEISKQFWAYQVDRKVLND--PKSFINNVPHMSFVWGDDNV 145
Query: 109 EFMKKRYESFK--EIFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTM 165
F+KKR+ + + +F G+E D ++IK+ P V+ G + I + +
Sbjct: 146 AFLKKRHAALQHSSLFRGMEYSEDPEQIKQWVPLVMEGREPGQK----IAATRMSIGTDV 201
Query: 166 NFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVISED------AEEVYAKFV 218
NF +++ V +L K ++ L +V+ +++ +D T+ V D V A+FV
Sbjct: 202 NFGEITRQLV-GSLSAKDTFKLRLQHEVRDLKRNDDNTWTVTMADLANGDKETSVKARFV 260
Query: 219 LVNAGSYALPLAQSMGYGLDLGC--LPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAA 271
+ AG AL L Q G G PV GSF PD+++ KVY + P +
Sbjct: 261 FIGAGGGALKLLQMSGIPEAEGYAGFPVGGSFLATTNPDVVKRHLAKVYGKASVGSPPMS 320
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERN 299
V +I GK + GP A K +N
Sbjct: 321 VPHLDTRMIDGKPVLLFGPFATFSTKFLKN 350
>ref|NP_372889.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_375478.1| (NC_002745) hypothetical protein, simialr to malate:quinone
oxidoreductase [Staphylococcus aureus subsp. aureus
N315]
ref|NP_647103.1| (NC_003923) ORFID:MW2286~hypothetical protein, similar to
malate:quinone oxidoreductase [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB43457.1| (AP003137) ORFID:SA2155~hypothetical protein, similar to
malate:quinone oxidoreductase [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58527.1| (AP003365) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
dbj|BAB96151.1| (AP004830) ORFID:MW2286~hypothetical protein, similar to
malate:quinone oxidoreductase [Staphylococcus aureus
subsp. aureus MW2]
Length = 511
Score = 68.6 bits (166), Expect = 1e-10
Identities = 108/451 (23%), Positives = 188/451 (40%), Gaps = 61/451 (13%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IGGG+ L E S K + + EK ++ + SS+ N+ T H E NYT
Sbjct: 28 DVILIGGGIMSATLGTLLKELSPEKNIKVFEKLAQPGEESSNVWNNAGTGHSALCELNYT 87
Query: 66 PE---------KAKKVRLSAYKTRQ---YALNKG-LQN--EVIFETQKMAIGVGDEECEF 110
E KA K+ ++Q Y + G L N I M+ +G++ F
Sbjct: 88 KEGKDGTVDCSKAIKINEQYQISKQFWAYLVKTGQLDNPDRFIQAVPHMSFVIGEDNVAF 147
Query: 111 MKKRYESFKE--IFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNF 167
+K R + K+ +F ++ D++++K P +I G + + I Y + + +NF
Sbjct: 148 IKSRVATLKKSVLFEKMKLSQDEEEMKSWVPLMIEGR----KSDEPIALTYDETGTDVNF 203
Query: 168 ----AKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAE-----EVYAKFV 218
AKL EN + + ++ V +KK +++ + V +D E + FV
Sbjct: 204 GALTAKLFENLEQRGVGIQYKQNV---LDIKK--QKSGAWLVKVKDLETNETTTYESDFV 258
Query: 219 LVNAGSYALPLAQSMG--YGLDLGCLPVAGSF-----YFVPDLLRGKVYTVQNPKLPFAA 271
+ AG +LPL Q G +G PV+G F V D KVY P +
Sbjct: 259 FIGAGGASLPLLQKTGIKQSKHIGGFPVSGLFLRCTNQEVIDRHHAKVYGKAAVGAPPMS 318
Query: 272 VHGDPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD 329
V + GK + GP A PK + G ++L+K ++ + + +
Sbjct: 319 VPHLDTRFVDGKRSLLFGPFAGFSPKFLKT-----GSHMDLIKSVKPNNIVTMLSAGIKE 373
Query: 330 KEIRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRT---K 386
+ Y+ + ++ + + D + P+ ED E G+ R QV+ T K
Sbjct: 374 MSLTKYLVSQL-----MLSNDERMDDLRVFFPNAKNEDWEVITA-GQ-RVQVIKDTEDSK 426
Query: 387 RKLELGEKKICTHKG-ITFNMTPSPGATSCL 416
L+ G + I + G + + SPGA++ +
Sbjct: 427 GNLQFGTEVITSDDGTLAALLGASPGASTAV 457
>ref|NP_253330.1| (NC_002516) malate:quinone oxidoreductase [Pseudomonas aeruginosa]
pir||G83065 malate:quinone oxidoreductase PA4640 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08028.1|AE004878_6 (AE004878) malate:quinone oxidoreductase [Pseudomonas aeruginosa]
Length = 507
Score = 68.6 bits (166), Expect = 1e-10
Identities = 109/448 (24%), Positives = 186/448 (41%), Gaps = 61/448 (13%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D +++G G+ L E ++ +VE A SS+ N+ T H G E NYT
Sbjct: 10 DMLLVGAGIMSATLAVLLKELDPNLKMEVVELQESGAIESSNPWNNAGTGHAGLCELNYT 69
Query: 66 PEKAK---KVRLSAYKTRQYALNKGLQNEVI----FETQKMAIGV--------GDEECEF 110
P+ A ++ + + ++K + ++ F + K I G E +
Sbjct: 70 PQSADGSIDIKKAVGINTMFEVSKQFWSHLVAKGTFGSPKTFINPVPHLSFVRGSEGIAY 129
Query: 111 MKKRYESFK-----EIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTM 165
+KKR+ES E V E DK + E P ++ G + I + + +
Sbjct: 130 LKKRFESLTKHHAFETMVYSE--DKATLAEWMPLMMPGRPA----DEAIAATRVEGGTDV 183
Query: 166 NFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDA-----EEVYAKFVLV 220
NF L+ ++ L +P Q+ N KV + + ++ + V +D E+ A+FV +
Sbjct: 184 NFGALTNQLLQH-LAQQPGAQIRYNQKVTHLRRADNGWRVTVKDTRNGGDREIQARFVFL 242
Query: 221 NAGSYALPLAQSMGY--GLDLGCLPVAGSFYFV--PDLLR---GKVYTVQNPKLPFAAVH 273
AG ALPL Q G G G PV+G + P++++ KVY+ P +V
Sbjct: 243 GAGGGALPLLQLSGIPEGKGFGGFPVSGQWLRCDNPEIVKQHQAKVYSQAEVGSPPMSVP 302
Query: 274 GDPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKE 331
V+ GK + GP A K R+ G L+L ++ + + +
Sbjct: 303 HLDTRVVDGKKSLLFGPYAGFSTKFLRH-----GSFLDLPLSVRPGNILPMLSVARDNMD 357
Query: 332 IRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLED--LEYAHGFGEVRPQVLDRTKRK- 388
+ Y+ V + P + L+ +K P ED LE A G+ R Q++ + +K
Sbjct: 358 LTRYLI-GQVMQSP----EQRLEALRKFYPEARAEDWRLEVA---GQ-RVQIIKKDPKKG 408
Query: 389 --LELGEKKICTHKG-ITFNMTPSPGAT 413
L+ G + + H G I + SPGA+
Sbjct: 409 GILQFGTELVAAHDGSIAALLGASPGAS 436
>ref|NP_417146.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P37339|YGAF_ECOLI Hypothetical protein ygaF
pir||E65045 hypothetical protein in gabP 3'region - Escherichia coli (strain
K-12)
gb|AAC75707.1| (AE000351) orf, hypothetical protein [Escherichia coli K12]
Length = 444
Score = 68.2 bits (165), Expect = 2e-10
Identities = 101/420 (24%), Positives = 173/420 (41%), Gaps = 46/420 (10%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 24 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKES--APACHQTGHNSGVIHAG---VYY 78
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
TP KA+ T+ + G++ + KM + D E E M+ +E
Sbjct: 79 TPGSLKAQFCLAGNRATKAFCDQNGIRYD---NCGKMLVATSDLEMERMRALWERTAANG 135
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+ E + +++E EPN I G GI + I YR + M AK+ ++
Sbjct: 136 IEREWLNADELREREPN-ITGLGGIFVPSSGI-VSYRDVTAAM--AKIFQS--------- 182
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
++ N +V + + + + + E A ++ +G A L + +G
Sbjct: 183 RGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIIC 242
Query: 243 PVAGSFY-FVPD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLER 298
P G ++ P+ ++ +Y + +P +PF VH +I G +GP A+ K E
Sbjct: 243 PFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLAFKREG 300
Query: 299 NKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQ 357
+ K D + D +I + ++N++ + + K +L+ Q
Sbjct: 301 YR-----------KRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQ 349
Query: 358 KIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCL 416
K P LSL DL+ + G VR Q + + ++ + T + I PSP ATS +
Sbjct: 350 KYCPRLSLSDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRTIHTCNAPSPAATSAI 405
>dbj|BAA16521.1| (D90890) similar to [SwissProt Accession Number P37339]
[Escherichia coli]
Length = 422
Score = 68.2 bits (165), Expect = 2e-10
Identities = 101/420 (24%), Positives = 173/420 (41%), Gaps = 46/420 (10%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 2 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKES--APACHQTGHNSGVIHAG---VYY 56
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
TP KA+ T+ + G++ + KM + D E E M+ +E
Sbjct: 57 TPGSLKAQFCLAGNRATKAFCDQNGIRYD---NCGKMLVATSDLEMERMRALWERTAANG 113
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+ E + +++E EPN I G GI + I YR + M AK+ ++
Sbjct: 114 IEREWLNADELREREPN-ITGLGGIFVPSSGI-VSYRDVTAAM--AKIFQS--------- 160
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
++ N +V + + + + + E A ++ +G A L + +G
Sbjct: 161 RGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIIC 220
Query: 243 PVAGSFY-FVPD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLER 298
P G ++ P+ ++ +Y + +P +PF VH +I G +GP A+ K E
Sbjct: 221 PFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLAFKREG 278
Query: 299 NKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQ 357
+ K D + D +I + ++N++ + + K +L+ Q
Sbjct: 279 YR-----------KRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQ 327
Query: 358 KIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCL 416
K P LSL DL+ + G VR Q + + ++ + T + I PSP ATS +
Sbjct: 328 KYCPRLSLSDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRTIHTCNAPSPAATSAI 383
>gb|AAA16402.1| (U00008) yojH [Escherichia coli]
Length = 490
Score = 66.2 bits (160), Expect = 7e-10
Identities = 101/421 (23%), Positives = 182/421 (42%), Gaps = 56/421 (13%)
Query: 32 VAIVEKCSKLAQISSSAKANSQTIHDGSIETNYTP---------EKAKKVRLSAYKTRQY 82
+ +VE+ +AQ SS+ N+ T H +E NYTP EKA + + +RQ+
Sbjct: 1 MTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISIEKAVAINEAFQISRQF 60
Query: 83 ---ALNKGL---QNEVIFETQKMAIGVGDEECEFMKKRYESFKE--IFVGLE-EFDKQKI 133
+ +G+ I M+ G++ F++ RY + ++ +F G+ D +I
Sbjct: 61 WAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAALQQSSLFRGMRYSEDHAQI 120
Query: 134 KELEPNVILGANGIDRHENIIGHGYRKDWST-MNFAKLSENFVEEALKLKPNNQVFLNFK 192
KE P V+ G D + + R + T +N+ +++ + +L+ K N + L+ +
Sbjct: 121 KEWAPLVM---EGRDPQQKVA--ATRTEIGTDVNYGEITRQLI-ASLQKKSNFSLQLSSE 174
Query: 193 VKKIEKRND-TYAVISED-----AEEVYAKFVLVNAGSYALPLAQSMGY--GLDLGCLPV 244
V+ +++ +D T+ V D A+ + AKFV + AG AL L Q G D PV
Sbjct: 175 VRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLLQESGIPEAKDYAGFPV 234
Query: 245 AGSFYFV--PDLLR---GKVYTVQNPKLPFAAVHGDPDAVIKGKTRI--GPTALTMPKLE 297
G F PD++ KVY + P +V V+ GK + GP A K
Sbjct: 235 GGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLDGKRVVLFGPFATFSTKFL 294
Query: 298 RNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQ 357
+N G +L+ +V + + + ++ Y+ + ++ + + +
Sbjct: 295 KN-----GSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQV-----MLSEEDRFEALK 344
Query: 358 KIIPSLSLEDLEYAHGFGEVRPQVLDRTKRK---LELGEKKICTHKG-ITFNMTPSPGAT 413
+ P ED G+ R Q++ R K L LG + + +G I + SPGA+
Sbjct: 345 EYYPQAKKEDWRLWQA-GQ-RVQIIKRDAEKGGVLRLGTEVVSDQQGTIAALLGASPGAS 402
Query: 414 S 414
+
Sbjct: 403 T 403
>gb|AAF53729.1| (AE003661) CG10639 gene product [Drosophila melanogaster]
Length = 455
Score = 65.9 bits (159), Expect = 1e-09
Identities = 109/446 (24%), Positives = 182/446 (40%), Gaps = 63/446 (14%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
++D V++GGG+ G A+ + +VA++EK KLA+ S NS IH G
Sbjct: 42 DYDLVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGH--NSGVIHAGIY--- 96
Query: 64 YTPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKK-RYESFKE 120
Y P KA+ + Y K + + +T K+ + ++E + +K
Sbjct: 97 YKPGTLKARLCVEGMHLAYAYLDEKKIPYK---KTGKLIVATDEKEVKLLKDLEKRGIAN 153
Query: 121 IFVGLEEFDKQKIKELEPNVILGANGIDR-HENIIGHGYRKDWSTMNFAKLSENFVEEAL 179
L + +I+E+EP G + H I+ DW + +E++ ++
Sbjct: 154 NVPDLRMIEGSEIQEIEP-YCQGVMALHSPHTGIV------DWGLV-----TEHYGQDFK 201
Query: 180 KLKPNNQVFLNFKVKKIE--KRNDTYAVISEDA---EEVYAKFVLVNAGSYALPLAQSMG 234
+ ++L+F V K K Y V A + V K VL G + LA+ G
Sbjct: 202 QC--GGDIYLDFNVSKFTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAEKTG 259
Query: 235 YGLDLGCLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTA 290
D +P G + + +++G +Y V +P+ PF VH P + G +GP A
Sbjct: 260 CPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPR--MDGSIWLGPNA 317
Query: 291 LTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKR 350
+ K E W D+N +F++ FD + K + F L + K
Sbjct: 318 VLALKRE-GYTW----------GDIN--LFEL-FDALRYPGFVKMASKYIGFGLSEMSKS 363
Query: 351 KF----LKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRKL-----ELGEKKICTHKG 401
F +K QK IP ++ D++ G VR Q +D + + G+ K
Sbjct: 364 WFINLQIKALQKYIPDITEYDIQ--RGPAGVRAQAMDLDGNLVDDFVFDRGQGSGALAKR 421
Query: 402 ITF-NMTPSPGATSCLQNALVDSQEI 426
+ PSPGATS L A + + +I
Sbjct: 422 VLHCRNAPSPGATSSLAIAKMIADKI 447
>dbj|BAA11314.1| (D78208) hypothetical protein URF5 [Plectonema boryanum]
Length = 61
Score = 64.7 bits (156), Expect = 2e-09
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSI 60
+D V++GGGV+G A Y+L+ ++ LKRVA++EK S++A ++S + NSQTIH G I
Sbjct: 6 YDVVVVGGGVAGAALLYSLATFTDLKRVALIEKYSQVATVNSKSTNNSQTIHCGDI 61
>ref|NP_311548.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
dbj|BAB36944.1| (AP002562) hypothetical protein [Escherichia coli O157:H7]
Length = 444
Score = 64.7 bits (156), Expect = 2e-09
Identities = 99/420 (23%), Positives = 172/420 (40%), Gaps = 46/420 (10%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 24 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPA--CHQTGHNSGVIHAG---VYY 78
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
TP KA+ T+ + G++ + KM + + E E M+ +E
Sbjct: 79 TPGSLKAQFCLAGNRATKAFCDQNGIRYD---NCGKMLVATSELEMERMRALWERTAANG 135
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+ E + +++E EPN I G GI + I YR+ + M AK+ +
Sbjct: 136 IEREWLNADELREREPN-ITGLGGIFVPSSGI-VSYREVTAAM--AKIFQ---------A 182
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
++ N +V + + + + + A ++ +G A L + +G
Sbjct: 183 RGGEIIYNAEVSGLSEHKSGVVIRTRQGSDYEASTLISCSGLMADRLVKMLGLEPGFIIC 242
Query: 243 PVAGSFY-FVPD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLER 298
P G ++ P+ ++ +Y + +P +PF VH +I G +GP A+ K E
Sbjct: 243 PFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLAFKREG 300
Query: 299 NKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQ 357
+ K D + D +I + ++N++ + + K +L+ Q
Sbjct: 301 YR-----------KRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQ 349
Query: 358 KIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCL 416
K P LSL DL+ + G VR Q + + ++ + T + I PSP ATS +
Sbjct: 350 KYCPRLSLSDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRTIHTCNAPSPAATSAI 405
>ref|NP_289209.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG57767.1|AE005495_2 (AE005495) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 444
Score = 63.5 bits (153), Expect = 5e-09
Identities = 99/420 (23%), Positives = 171/420 (40%), Gaps = 46/420 (10%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 24 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPA--CHQTGHNSGVIHAG---VYY 78
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
TP KA+ T+ + G++ + KM + + E E M+ +E
Sbjct: 79 TPGSLKAQFCLAGNRATKAFCDQNGIRYD---NCGKMLVATSELEMERMRALWERTAANG 135
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+ E + +++E EPN I G GI + I YR+ + M AK+ +
Sbjct: 136 IEREWLNADELREREPN-ITGLGGIFVPSSGI-VSYREVTAAM--AKIFQ---------A 182
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
++ N +V + + + + + A ++ +G A L + G
Sbjct: 183 RGGEIIYNAEVSGLSEHKSGVVIRTRQGSDYEASTLISCSGLMADRLVKMXGLEPGFIIC 242
Query: 243 PVAGSFY-FVPD---LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLER 298
P G ++ P+ ++ +Y + +P +PF VH +I G +GP A+ K E
Sbjct: 243 PFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLAFKREG 300
Query: 299 NKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKDAQ 357
+ K D + D +I + ++N++ + + K +L+ Q
Sbjct: 301 YR-----------KRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQ 349
Query: 358 KIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATSCL 416
K P LSL DL+ + G VR Q + + ++ + T + I PSP ATS +
Sbjct: 350 KYCPRLSLSDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRTIHTCNAPSPAATSAI 405
>ref|NP_347951.1| (NC_003030) Glycerol-3-phosphate dehydrogenase, GLPA [Clostridium
acetobutylicum]
gb|AAK79291.1|AE007644_1 (AE007644) Glycerol-3-phosphate dehydrogenase, GLPA [Clostridium
acetobutylicum]
Length = 475
Score = 63.5 bits (153), Expect = 5e-09
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 35/230 (15%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D IIG GV GC+ F L++Y RV ++EK ++ ++KANS +H G Y
Sbjct: 2 YDVAIIGAGVIGCSIFRELTKYDL--RVVVLEKEKDVSM--GTSKANSAIVHAG-----Y 52
Query: 65 TPEKAKKVRLSAYKTRQYALNKGLQNE--VIFETQKMAIGVGDEECEF-MKKRYESFKEI 121
PE+ ++ Y + + + L E V F+ + D+E F +K YE+ ++
Sbjct: 53 DPEEG--TLMAKYNVKGNEMFEELCKELSVPFKRNGSLVLAFDKEDMFKVKHLYENGSKL 110
Query: 122 FV-GLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMN----FAKLSENFVE 176
V GL+ ++ ++ ++EPN+ ++ I G Y + L+EN V
Sbjct: 111 GVKGLKILNRDEVLKMEPNL---------NDKIEGALYAPTGGIVGPFEYTIALAENGVT 161
Query: 177 EALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYA 226
K+K L +V I+KR D + + +ED E + AKFV+ AG YA
Sbjct: 162 NGGKIK------LKKEVVSIKKR-DVFKIGTEDGETIEAKFVINAAGVYA 204
>ref|NP_457189.1| (NC_003198) putative GAB DTP gene cluster repressor [Salmonella
enterica subsp. enterica serovar Typhi]
emb|CAD05899.1| (AL627276) putative GAB DTP gene cluster repressor [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 422
Score = 62.4 bits (150), Expect = 1e-08
Identities = 96/422 (22%), Positives = 175/422 (40%), Gaps = 50/422 (11%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 2 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKES--APACHQTGHNSGVIHAG---VYY 56
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFET-QKMAIGVGDEECEFMKKRYESFKEI 121
TP KA+ T+ + QN + ++T KM + + E M+ +E
Sbjct: 57 TPGSLKARFCLAGNQATKTFC----DQNNIRYDTCGKMLVATSELEMARMRALWERTAAN 112
Query: 122 FVGLEEFDKQKIKELEPNVILGANGI-DRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
+ E + +++E EPN+I G GI I+ + +D +T ++ F +
Sbjct: 113 GLEREWLNAAELREREPNII-GLGGIFVPSSGIVSY---RDVAT----AMANRFQAK--- 161
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
++ + +V + + + + E+ ++ AG A L + +G
Sbjct: 162 ---GGEIIYHAEVSALTEHAAGVIIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFI 218
Query: 241 CLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKL 296
P G ++ + ++ +Y + +P +PF VH +I G +GP A+ K
Sbjct: 219 ICPFRGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLALKR 276
Query: 297 ERNKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKD 355
E + K D++ D +I + ++N++ + + K +L+
Sbjct: 277 EGYR-----------KRDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRR 325
Query: 356 AQKIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATS 414
QK PSL++ DL+ + G VR Q + + ++ + T + I PSP ATS
Sbjct: 326 VQKYCPSLTVNDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRSIHTCNAPSPAATS 381
Query: 415 CL 416
+
Sbjct: 382 AI 383
>ref|NP_461716.1| (NC_003197) paral putative sarcosine oxidase-like protein
[Salmonella typhimurium LT2]
gb|AAL21675.1| (AE008827) paral putative sarcosine oxidase-like protein
[Salmonella typhimurium LT2]
Length = 422
Score = 62.0 bits (149), Expect = 1e-08
Identities = 96/422 (22%), Positives = 174/422 (40%), Gaps = 50/422 (11%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D VIIGGG+ G +T L + R+A++EK S A NS IH G Y
Sbjct: 2 YDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKES--APACHQTGHNSGVIHAG---VYY 56
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFET-QKMAIGVGDEECEFMKKRYESFKEI 121
TP KA+ T+ + QN + ++T KM + + E M+ +E
Sbjct: 57 TPGSLKAQFCLAGNQATKTFC----DQNNIRYDTCGKMLVATSELEMARMRALWERTAAN 112
Query: 122 FVGLEEFDKQKIKELEPNVILGANGI-DRHENIIGHGYRKDWSTMNFAKLSENFVEEALK 180
+ E +++E EPN+I G GI I+ + +D +T ++ F +
Sbjct: 113 GLEREWLSAAELREREPNII-GLGGIFVPSSGIVSY---RDVAT----AMANRFQAK--- 161
Query: 181 LKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLG 240
++ + +V + + + + E+ ++ AG A L + +G
Sbjct: 162 ---GGEIIYHAEVSALTEHAAGVVIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFI 218
Query: 241 CLPVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKL 296
P G ++ + ++ +Y + +P +PF VH +I G +GP A+ K
Sbjct: 219 ICPFRGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVH--LTRMIDGSVTVGPNAVLALKR 276
Query: 297 ERNKCWLKGISLELLKMDLN-KDVFKIAFDLMSDKEIRNYVFKNMVFELPIIGKRKFLKD 355
E + K D++ D +I + ++N++ + + K +L+
Sbjct: 277 EGYR-----------KRDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRR 325
Query: 356 AQKIIPSLSLEDLE-YAHGFGEVRPQVLDRTKRKLELGEKKICTHKGITFNMTPSPGATS 414
QK PSL++ DL+ + G VR Q + + ++ + T + I PSP ATS
Sbjct: 326 VQKYCPSLTVNDLQPWPAG---VRAQAVSPDGKLID-DFLFVTTPRSIHTCNAPSPAATS 381
Query: 415 CL 416
+
Sbjct: 382 AI 383
>ref|NP_628292.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
emb|CAC08409.1| (AL392177) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 426
Score = 61.6 bits (148), Expect = 2e-08
Identities = 72/304 (23%), Positives = 123/304 (39%), Gaps = 45/304 (14%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IGGG+ G +T Y ++ + RV ++EK A+ + NS IH G Y
Sbjct: 21 DVLVIGGGIVGLSTAYAITRAAPGTRVTVLEKEPGPARHQTGR--NSGVIHSG---VYYR 75
Query: 66 PE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFV 123
P KA+ A + ++ G+ + V T K+ + E + + +E +
Sbjct: 76 PGSLKARYAVRGAAEMVKFCAEYGIDHAV---TGKLIVATDRAELPRLHALVQRGRENGI 132
Query: 124 GLEEFDKQKIKELEPNVI------LGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEE 177
+ E +I+E EP V +G GI + + R + + +
Sbjct: 133 PVRELSGAQIQEYEPEVRGLAAIHVGTTGICDYVAVARQLARASGAEIRYGA-------- 184
Query: 178 ALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGS-YALPLAQSMGYG 236
+V ++++R + +V VLVN G + +A+ G
Sbjct: 185 --------------EVHRVDRRPGLGVAVRTRTGDVLRARVLVNCGGLHCDRIARLTGDD 230
Query: 237 LDLGCLPVAGSFYFV--PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMP 294
+ +P G +Y + P+L+RG VY V +P PF VH I G +GP A +P
Sbjct: 231 TGMRIVPFRGEYYELARPELVRGLVYPVPDPAFPFLGVH--LTRGIDGGVHVGPNA--VP 286
Query: 295 KLER 298
L R
Sbjct: 287 ALAR 290
>gb|AAD51981.1|AF176206_1 (AF176206) malate:quinone oxidoreductase [Pseudomonas fluorescens]
Length = 505
Score = 61.2 bits (147), Expect = 2e-08
Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 30/266 (11%)
Query: 8 VIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYTPE 67
V++G G+ L E + +VE A SS+ N+ T H G E NYTP+
Sbjct: 13 VLVGAGIMSATLAVLLKELDPAISLEVVELMDSGAAESSNPWNNAGTGHAGLCELNYTPQ 72
Query: 68 KAK---KVRLSAYKTRQYALNK------------GLQNEVIFETQKMAIGVGDEECEFMK 112
A ++ + + Q+ ++K G I ++ G++ F+K
Sbjct: 73 AADGNVDIKKAVHINTQFEVSKQFWTYLTRKGTFGSSKSFIAPVPHLSFVQGEKGVSFLK 132
Query: 113 KRYESFKE--IFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAK 169
KR+E + F +E DK ++ E P ++ G + +I + + +NF
Sbjct: 133 KRFELMHQHHAFADMEYTEDKARMAEWMPLMMPGRPA----DEVIAATRVMNGTDVNFGA 188
Query: 170 LSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISED-----AEEVYAKFVLVNAGS 224
L+ ++ L P+ QV +V +++ + V +D + +V AKFV + A
Sbjct: 189 LTNQLLKH-LTSAPDTQVKYCKRVTGLKRNGSGWTVSIKDVNSGSSRDVDAKFVFLGAAG 247
Query: 225 YALPLAQSMGY--GLDLGCLPVAGSF 248
ALPL Q+ G G PV+G +
Sbjct: 248 AALPLLQASGIEESKGFGGFPVSGQW 273
>ref|NP_298232.1| (NC_002488) malate:quinone oxidoreductase [Xylella fastidiosa 9a5c]
pir||A82743 probable malate dehydrogenase (acceptor) (EC 1.1.99.16) XF0942
[imported] - Xylella fastidiosa (strain 9a5c)
gb|AAF83752.1|AE003933_4 (AE003933) malate:quinone oxidoreductase [Xylella fastidiosa 9a5c]
Length = 562
Score = 60.8 bits (146), Expect = 3e-08
Identities = 77/331 (23%), Positives = 137/331 (41%), Gaps = 40/331 (12%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D V+IGGG+ L E ++ + E+ + +AQ SS N+ T H E NYT
Sbjct: 42 DVVLIGGGIMSVTLGTYLQELQPDWKIELFERLNGIAQESSDGWNNAGTGHSAFAELNYT 101
Query: 66 PE---------KAKKVRLSAYKTRQYALNK------GLQNEVIFETQKMAIGVGDEECEF 110
PE +A K+ +R++ ++ E I T M+ G++ E+
Sbjct: 102 PELQDGTIEIKRAIKIAEQFEISREFWSHQVRHGRLPAPTEFINATPHMSFVWGEDRIEY 161
Query: 111 MKKRYESF--KEIFVGLE-EFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNF 167
++KR+ + +F G++ D I++ P ++ G + I Y + +NF
Sbjct: 162 LRKRHNALIKNPLFYGMQFSTDPAVIQQWAPLLMEGRT----QDQKIAATYMPLGTDVNF 217
Query: 168 AKLSENFVEEALKLKPNNQVFLNFKVKKIEKRND-TYAVISED-----AEEVYAKFVLVN 221
++ + + L+ N + L+ +V + + D T+ V ++ + ++FV +
Sbjct: 218 GVITRDLAKH-LQYSQNFALHLDHEVTALRQNPDKTWNVTVKNLNNGQERSIKSRFVFIG 276
Query: 222 AGSYALPLAQSMGY--GLDLGCLPVAGSFYFVPDLLRGKVYTV------QNPKLPFAAVH 273
AG AL L Q G D PV G F + K + V ++ P + H
Sbjct: 277 AGGAALKLLQLSGIPESKDYAGFPVGGQFLSFENTAITKRHNVKAYGMAESGSPPMSVPH 336
Query: 274 GDPDAVIKGKTRI--GPTALTMPKLERNKCW 302
D + GK+ + GP AL K + W
Sbjct: 337 LDA-RKLDGKSIVLFGPFALYSTKFLKKGSW 366
>ref|NP_442886.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
pir||S76786 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18698.1| (D90916) ORF_ID:sll1495~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 397
Score = 60.1 bits (144), Expect = 5e-08
Identities = 67/299 (22%), Positives = 123/299 (40%), Gaps = 30/299 (10%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
+D IIGGG+ G AT + ++ I+EK + A + NS IH G Y
Sbjct: 4 YDITIIGGGIVGLATGLFIGRRFPQYKLLILEKEADPAHHQTGH--NSGVIHSGIY---Y 58
Query: 65 TPE--KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIF 122
P KA+ + ++ L EV K+ + EE ++ + +
Sbjct: 59 KPGSFKAQFTKAGNQSMVEFCQEHALPYEVC---GKVIVATKPEELPLLENLFNRGQANG 115
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
+ +++ +++KE EP H +G + +N+ + + + E L
Sbjct: 116 LKVKKLSAEQVKEYEP-----------HVQCLGGIHVFTSGIVNYKLVCQKYAE--LIQV 162
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
++ N +V I + + +++I+ +++F++ G + LA+ G D +
Sbjct: 163 QGGEIKFNHRVNGIVTQANGHSLITNQGN-FFSRFLINCGGLQSDRLAKMAGINPDAKIV 221
Query: 243 PVAGSFYFVPD----LLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLE 297
P G +Y + L++G +Y V NP PF VH +I G GP A+ K E
Sbjct: 222 PFRGEYYELKPEKRYLVKGLIYPVPNPAFPFLGVHF--TRMIDGSIHAGPNAVLSLKRE 278
>ref|NP_601207.1| (NC_003450) COG0579:Predicted dehydrogenase [Corynebacterium
glutamicum]
sp|O69282|MQO_CORGL Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor])
(MQO)
emb|CAA12237.1| (AJ224946) L-malate dehydrogenase (acceptor) [Corynebacterium
glutamicum]
dbj|BAB99394.1| (AP005280) Predicted dehydrogenase or malate:quinone
oxidoreductase, malate dehydrogenase [acceptor]
[Corynebacterium glutamicum ATCC 13032]
Length = 500
Score = 58.9 bits (141), Expect = 1e-07
Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 26/252 (10%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E D V+IG G+ L + + E+ AQ SSS N+ T H E N
Sbjct: 14 EADVVLIGAGIMSSTLGAMLRQLEPSWTQIVFERLDGPAQESSSPWNNAGTGHSALCELN 73
Query: 64 YTPEKAKKVRLSA--------YKTRQY---ALNKGL---QNEVIFETQKMAIGVGDEECE 109
YTPE KV ++ +RQ+ + +G+ E I ++ G G ++
Sbjct: 74 YTPEVKGKVEIAKAVGINEKFQVSRQFWSHLVEEGVLSDPKEFINPVPHVSFGQGADQVA 133
Query: 110 FMKKRYESFKE--IFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNF 167
++K RYE+ K+ +F G+ D + + L A G D + + + + + +N+
Sbjct: 134 YIKARYEALKDHPLFQGMTYADDE--ATFTEKLPLMAKGRD-FSDPVAISWIDEGTDINY 190
Query: 168 AKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVI-----SEDAEEVYAKFVLVNA 222
++ +++ A ++ +VK I+ + V + D + + A FV V A
Sbjct: 191 GAQTKQYLDAA--EVEGTEIRYGHEVKSIKADGAKWIVTVKNVHTGDTKTIKANFVFVGA 248
Query: 223 GSYALPLAQSMG 234
G YAL L +S G
Sbjct: 249 GGYALDLLRSAG 260
>ref|NP_623575.1| (NC_003869) predicted dehydrogenase [Thermoanaerobacter
tengcongensis]
gb|AAM25179.1| (AE013151) predicted dehydrogenase [Thermoanaerobacter
tengcongensis]
Length = 498
Score = 56.6 bits (135), Expect = 6e-07
Identities = 77/328 (23%), Positives = 139/328 (41%), Gaps = 35/328 (10%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M +D +I+G GV GC+ LS+Y +V +VEK A ++KANS +H G
Sbjct: 1 MVYDVLIVGAGVVGCSIARELSKYK--LKVIVVEKGEDAAS-EGASKANSAILHAG---- 53
Query: 63 NYTPEKAK-KVRLSAYKTRQY-ALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYE-SFK 119
Y P K +L+ + L K L + + T + + +EE + + K ++ K
Sbjct: 54 -YDPVPGTLKAKLNVRGNEMFEELCKDL-DVPMKRTGSLVVAFSEEEIKELYKLFDRGIK 111
Query: 120 EIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMN----FAKLSENFV 175
L K +KE+EP + ++N+I Y K ++ L+EN
Sbjct: 112 NGVKELSIITKDMVKEIEPYI---------NDNVIAALYAKKAGIISPYVFTIALAENAA 162
Query: 176 EEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGY 235
+ ++ N++V I+++ D + V+ ++E YA++V+ AG Y+ + +G
Sbjct: 163 QNGVEFSFNSEVV------DIKRKEDVF-VVKTPSKEFYARYVVNAAGVYSDVINNMVG- 214
Query: 236 GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGD-PDAVIKGKTRIGPTALTMP 294
P G Y + D +G + ++P G I G IGPT+ +
Sbjct: 215 AKPFSVHPRKGE-YLILDKDQGYIARTVIFQVPTKMGKGILVSPTIDGNLLIGPTSEDIQ 273
Query: 295 KLERNKCWLKGISLELLKMDLNKDVFKI 322
E +G++ + + D F +
Sbjct: 274 DKEFKATTREGLNKAITVAKRSVDKFDV 301
>ref|NP_563467.1| (NC_003366) probable glycerol-3-phosphate dehydrogenase
[Clostridium perfringens]
dbj|BAB82257.1| (AP003194) probable glycerol-3-phosphate dehydrogenase [Clostridium
perfringens]
Length = 476
Score = 53.9 bits (128), Expect = 4e-06
Identities = 89/363 (24%), Positives = 157/363 (42%), Gaps = 46/363 (12%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M +D IIG GV G A F L++Y+ +V +EK + +A ++KANS +H G
Sbjct: 1 MIYDVAIIGSGVIGGAIFRELTKYNL--KVVELEKENDVAM--GASKANSAIVHSG---- 52
Query: 63 NYTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQK---MAIGVGDEECEFMKKRYE-SF 118
Y PE ++ Y + L ++ ++ + IG +++ + ++ Y
Sbjct: 53 -YDPEPG--TLMAKYNVEGNKMFDKLCKDLSVPFKRNGSLIIGFDEDDQKELEVLYNRGI 109
Query: 119 KEIFVGLEEFDKQKIKELEPNVILGANG--IDRHENIIGHGYRKDWSTMNFA-KLSENFV 175
K G++ +++ E+EPN+ G I+G F LSEN +
Sbjct: 110 KNGVEGVKLLSAEEVLEMEPNLNKDVKGALFCPTGGIVG--------AYEFTIALSENAI 161
Query: 176 EEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGY 235
+ +L+ LN KV IEK ++ + + E+ + V A+FV+ AG YA + +M
Sbjct: 162 DNGGELR------LNSKVVGIEK-DENFKIKLENGDVVEARFVVNAAGIYADKI-HNMVC 213
Query: 236 GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGD-PDAVIKGKTRIGPTALTMP 294
D P G Y+V D +G+++ + P G + G +GP A+
Sbjct: 214 EEDFKITPRKGE-YYVLDKSQGRLFEKTIFQCPTKLGKGVLVTPTVHGNLLVGPDAI--- 269
Query: 295 KLERNKCWLKGISLELLKMDLNKDV-FKIAFDLMSDKEIRNYVFKNMVFELP--IIGKRK 351
+ C +S E + ++V K + + IRN+ + + P IIG+ K
Sbjct: 270 ----DTCDKDSVSTEYDGLAKVREVSLKTTNKVNFRENIRNFAGLRAIADKPDFIIGEAK 325
Query: 352 FLK 354
+K
Sbjct: 326 DVK 328
>ref|NP_109739.1| (NC_000912) glycerol-3-phospate dehydrogenase [Mycoplasma
pneumoniae]
sp|P75063|Y039_MYCPN Hypothetical protein MG039 homolog (D09_orf384)
pir||S73429 glycerol-3-phospate dehydrogenase glpD, aerob induced - Mycoplasma
pneumoniae (strain ATCC 29342)
gb|AAB95751.1| (AE000012) glycerol-3-phospate dehydrogenase [Mycoplasma
pneumoniae]
Length = 384
Score = 52.8 bits (125), Expect = 8e-06
Identities = 87/358 (24%), Positives = 148/358 (41%), Gaps = 55/358 (15%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D +I+GGGV GCAT Y LS+Y +V +VEK LAQ ++ ANS IH G I+ N
Sbjct: 5 DVLIVGGGVIGCATAYELSQYK--LKVTLVEKHHYLAQ--ETSHANSGVIHTG-IDPN-- 57
Query: 66 PEK--------AKKVRLSAYKTRQYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYES 117
P K KK+ L+ Y R + ++ ++ + + E+ E +K+R +
Sbjct: 58 PHKLTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNE-----MEREQLEVLKQRGIA 112
Query: 118 FKEIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEE 177
+ ++ K++ +LEP V E + G W+ + +
Sbjct: 113 NQINLEDIQMLSKEETLKLEPYV--------NPEIVAGLKIEGSWA------IDPVLASK 158
Query: 178 ALKLKPNN---QVFLNFKVKKIEKRND-TYAV--ISEDAEEVYAKFVLVNAGSYALPLAQ 231
L L Q+ N +V I K+ D TY V +E K ++ AG YA LA
Sbjct: 159 CLALAAQQNKVQICTNTEVTNISKQVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAH 218
Query: 232 SMGYGLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGD---PDAVIKGKTRIGP 288
+ D G + V + +G+++ + + +HG ++ G +GP
Sbjct: 219 -LAKADDFEQTTRRGQYVVVTN--QGELH-LNSMVFMVPTIHGKGVIVSPMLDGNFLVGP 274
Query: 289 TALTMPKLERNK-------CWLKGISLELL-KMDLNKDVFKIAFDLMSDKEIRNYVFK 338
TAL E + C L I ++ +++N + A DK +++ +
Sbjct: 275 TALDGVDKEATRYITKDAPCMLTKIGKHMVPSLNINNALISFAGSRPIDKATNDFIIR 332
>ref|XP_125762.1| (XM_125762) similar to hypothetical protein FLJ12618 [Mus musculus]
Length = 251
Score = 52.0 bits (123), Expect = 1e-05
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 39/239 (16%)
Query: 165 MNFAKLSENFVEEALKLKPNNQVFLNFKVKKIE-----------KRNDTYAVISEDAEEV 213
+N+ +++ +F ++ + + + +F+VK IE N AV + +E+
Sbjct: 11 VNYQQVALSFAQDFQEA--GDSILKDFEVKGIEIAKESPSRSKDSMNYPIAVKNSKGKEI 68
Query: 214 YAKFVLVNAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPD----LLRGKVYTVQNPKLPF 269
++V+ AG Y+ +++ G D +P G + + L++G +Y V + + PF
Sbjct: 69 RCRYVVTCAGLYSDHISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRFPF 128
Query: 270 AAVHGDPDAVIKGKTRIGPTALTMPKLERNKCWLKGISLELLKMDLNKDVFKIAFDLMSD 329
VH P ++G +GP A+ K E + + D+ + + K F
Sbjct: 129 LGVHFTPK--LEGTIWLGPNAVLTFKWEGYR------PFDFDARDVVEVILKSGF----- 175
Query: 330 KEIRNYVFKNMVFELPIIGKRKFL----KDAQKIIPSLSLEDLEYAHGFGEVRPQVLDR 384
N +F++ + + + K FL K QK IP +++ D+ G VR Q LDR
Sbjct: 176 ---INLMFQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDV--LRGPAGVRAQALDR 229
>ref|NP_561325.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80115.1| (AP003186) conserved hypothetical protein [Clostridium perfringens]
Length = 477
Score = 51.2 bits (121), Expect = 2e-05
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 26/222 (11%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D ++IG GV GC+ LS+Y+ V +VEK S +++ +K NS +H G E T
Sbjct: 3 DIIVIGAGVVGCSIARELSKYN--LDVLVVEKNSDVSE--GISKGNSGIVHAGYNEKIGT 58
Query: 66 PEKAKKVRLSAYKTRQYALNKGLQNEVIFETQK---MAIGVGDEECEFMKKRYESFKEIF 122
+ K+ + K + L ++ F ++ + DEE + ++ E+ +++
Sbjct: 59 LK--AKLNIEGNK-----IFDDLSRDLQFPFKRNGAFILAFSDEEMKTLESLKENGEKLG 111
Query: 123 V-GLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKL 181
V GLE +++ +EPN+ G+ N+ G + M A L+EN E ++
Sbjct: 112 VEGLEILTREEALNIEPNLNKEIVGV---LNVKTSGIVSPYE-MTIA-LAENAAENGVEF 166
Query: 182 KPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAG 223
K LN KV IEK ++ Y V + E V K ++ +G
Sbjct: 167 K------LNSKVTNIEKISEGYKVTLNNKELVSGKIIINASG 202
>ref|NP_326095.1| (NC_002771) GLYCEROL-3-PHOSPHATE DEHYDROGENASE (G-3-P
DEHYDROGENASE) [Mycoplasma pulmonis]
emb|CAC13437.1| (AL445563) GLYCEROL-3-PHOSPHATE DEHYDROGENASE (G-3-P DEHYDROGENASE)
[Mycoplasma pulmonis]
Length = 384
Score = 50.8 bits (120), Expect = 3e-05
Identities = 74/298 (24%), Positives = 123/298 (40%), Gaps = 41/298 (13%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDG-SIETNY 64
D +IIGGG+ G Y LS+Y + V ++EK LA +S K NS IH G ++N
Sbjct: 5 DIIIIGGGIIGITIAYELSKYKKVD-VLLLEKNPLLADETS--KGNSGVIHCGFDADSNK 61
Query: 65 TPEKAKKVRLSAYKTRQYALNKGLQNEVIFE--------TQKMAIGVGDEECEFMKKRYE 116
K L L E IF+ + + D E E ++K Y+
Sbjct: 62 IESKLN------------VLGNRLWQEKIFKDVHFPRAKVDSLVLAFNDLENEAVEKLYQ 109
Query: 117 SFKEIFVGLEE-FDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFV 175
GL K+ +K L IL + ++ WS ++ K S
Sbjct: 110 R------GLRNGVLKEHLKILTKEQILKKEPLVNNKVQSALLCTNSWS-IDPQKASYALA 162
Query: 176 EEALKLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGY 235
+ AL+ K ++ LN +V+ IE + D + + ++ + +K V+ AG Y +A+ GY
Sbjct: 163 KVALQNKV--KIELNSEVETIEYQEDFFYLKVKNGQSYKSKIVINAAGHYGDEIAKKAGY 220
Query: 236 GLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGD---PDAVIKGKTRIGPTA 290
G + G + L R + + ++ +HG ++ G+ +GPTA
Sbjct: 221 G-EFKLKARRGQYRI---LARSEGHVSKSILFMVPTIHGKGVIVSPMLDGRVLVGPTA 274
>ref|NP_217368.1| (NC_000962) hypothetical protein Rv2852c [Mycobacterium
tuberculosis H37Rv]
ref|NP_337430.1| (NC_002755) malate:quinone oxidoreductase [Mycobacterium
tuberculosis CDC1551]
sp|O05807|MQO_MYCTU Probable malate:quinone oxidoreductase (Malate dehydrogenase
[acceptor]) (MQO)
pir||G70589 hypothetical protein Rv2852c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08454.1| (Z95207) hypothetical protein Rv2852c [Mycobacterium tuberculosis
H37Rv]
gb|AAK47244.1| (AE007116) malate:quinone oxidoreductase [Mycobacterium
tuberculosis CDC1551]
Length = 493
Score = 50.4 bits (119), Expect = 4e-05
Identities = 98/449 (21%), Positives = 170/449 (37%), Gaps = 57/449 (12%)
Query: 6 DAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYT 65
D V+IG G+ L + ++E+ +A SS N+ T H E NYT
Sbjct: 8 DVVLIGAGIMSATLGVLLRRLEPNWSITLIERLDAVAAESSGPWNNAGTGHSALCEMNYT 67
Query: 66 PE---------KAKKVRLSAYKTRQ---YALNKGLQNEV---IFETQKMAIGVGDEECEF 110
PE KA +V TRQ YA G+ +V + ++ G E+
Sbjct: 68 PEMPDGSIDITKAVRVNEQFQVTRQFWAYAAENGILTDVRSFLNPVPHVSFVHGSRGVEY 127
Query: 111 MKKRYESF--KEIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFA 168
+++R ++ +F G E + + + + D + ++F
Sbjct: 128 LRRRQKALAGNPLFAGTEFIESPDEFARRLPFMAAKRAFSEP---VALNWAADGTDVDFG 184
Query: 169 KLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVI------SEDAEEVYAKFVLVNA 222
L++ + ++ +V+ + +++D + + + ++ KFV V A
Sbjct: 185 ALAKQLI--GYCVQNGTTALFGHEVRNLSRQSDGSWTVTMCNRRTGEKRKLNTKFVFVGA 242
Query: 223 GSYALPLAQSMGYGLDLGC--LPVAGSFYFV--PDLL---RGKVYTVQNPKL-PFAAVHG 274
G LP+ Q G G P+ G F P L R KVY P P A+H
Sbjct: 243 GGDTLPVLQKSGIKEVKGFAGFPIGGRFLRAGNPALTASHRAKVYGFPAPGAPPLGALHL 302
Query: 275 DPDAVIKGKTRI--GPTALTMPKLERNKCWLKGISLELLKMDLNKD-VFKIAFDLMSDKE 331
D + GK+ + GP A PK +LK + L + D + + ++++
Sbjct: 303 DL-RFVNGKSWLVFGPYAGWSPK------FLKHGQISDLPRSIRPDNLLSVLGVGLTERR 355
Query: 332 IRNYVFKNMVFELPIIGKRKFLKDAQKIIPSLSLEDLEYAHGFGEVRPQVLDRTKRK--- 388
+ NY+ + P + + ++ PS D E R QV+ R +R
Sbjct: 356 LLNYLISQLRLSEP-----ERVSALREFAPSAIDSDWELT--IAGQRVQVIRRDERNGGV 408
Query: 389 LELGEKKICTHKG-ITFNMTPSPGATSCL 416
LE G I G I + SPGA++ +
Sbjct: 409 LEFGTTVIGDADGSIAGLLGGSPGASTAV 437
>ref|NP_070683.1| (NC_000917) NADH oxidase (noxA-5) [Archaeoglobus fulgidus]
pir||A69482 NADH oxidase (noxA-5) homolog - Archaeoglobus fulgidus
gb|AAB89398.1| (AE000975) NADH oxidase (noxA-5) [Archaeoglobus fulgidus]
Length = 448
Score = 48.9 bits (115), Expect = 1e-04
Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 54/273 (19%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M++D +IIGGG +G T T ++ K VAI++K + + + +T+ GS+E
Sbjct: 4 MKYDVLIIGGGPAGIVTATTAKKFYPAKSVAIIKK-EETSLVPCGIPYIFKTL--GSVEA 60
Query: 63 NYTPE--------------------KAKKVRLSAYKTRQYALNKGLQNEVIFETQKMAI- 101
+ P KAK VR K+ Y +++F T +
Sbjct: 61 DVMPTKPAENLGIEFIIDEVEDVDVKAKVVRTKGGKSISY-------EKLVFATGSTPVM 113
Query: 102 ----GVGDEECEFMKKRYESFKEIFVGLEEFDKQKIKELEPNVILGAN--GIDRHENIIG 155
GV + + K E +++ + +K+ E VI+G G++ E I
Sbjct: 114 PRIEGVEKKGVFTVSKNIEELRKL--------HEAVKKAEKVVIVGGGFIGVEVGEQIAK 165
Query: 156 HGYRKDWSTM-------NFAKLSENFVEEALKLKPNNQVFLNFKVKKIEKRNDTYAVISE 208
G + M F K EE LK K +V+LN VK+I + AV
Sbjct: 166 AGKKFTMVEMMDQLLPAAFDKEFARIAEEELK-KLGVEVYLNSTVKRITGNSSVEAVELA 224
Query: 209 DAEEVYAKFVLVNAGSYA-LPLAQSMGYGLDLG 240
D ++ A V+++ G + LA+ G + +G
Sbjct: 225 DGRKIEADVVIMSVGYRPNIELAKKAGLRISIG 257
>ref|NP_603090.1| (NC_003454) Glycerol-3-phosphate dehydrogenase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL94389.1| (AE010531) Glycerol-3-phosphate dehydrogenase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 498
Score = 48.1 bits (113), Expect = 2e-04
Identities = 59/227 (25%), Positives = 100/227 (43%), Gaps = 28/227 (12%)
Query: 5 FDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNY 64
FD V+IG G+ G A LS+Y ++ +++K + ++ + KANS +H G
Sbjct: 24 FDVVVIGAGIMGAAVSRELSKYE--LKILLLDKENDVS--CGTTKANSAIVHAG------ 73
Query: 65 TPEKAKKVRLSA-YKTRQYALNKGLQNEVIFETQKM---AIGVGDEECEFMKKRYE-SFK 119
AK+ L A Y A+ + L EV +++ + ++E E ++ Y+
Sbjct: 74 --YDAKEGSLMAKYNVLGNAMYEDLCKEVDAPFRRVGSYVLAFSEKEKEHLEMLYQRGVN 131
Query: 120 EIFVGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEAL 179
+E D +I++ EP+V A G W KL EN +E +
Sbjct: 132 NGVPEMEIIDAAEIQKREPHVSKEAVAALYAGTA---GITGPWELT--IKLVENAMENGV 186
Query: 180 KLKPNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYA 226
KLK LN +V I+K N+ + + + E + K ++ AG YA
Sbjct: 187 KLK------LNSEVINIKKENNIFKIELKSGEVIKTKALINAAGVYA 227
>ref|NP_521607.1| (NC_003296) PROBABLE SARCOSINE OXIDASE (BETA SUBUNIT)
OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
emb|CAD17197.1| (AL646076) PROBABLE SARCOSINE OXIDASE (BETA SUBUNIT) OXIDOREDUCTASE
PROTEIN [Ralstonia solanacearum]
Length = 414
Score = 46.2 bits (108), Expect = 8e-04
Identities = 66/285 (23%), Positives = 112/285 (39%), Gaps = 24/285 (8%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E+D VI+GGG G AT Y L++ + VA++EK I A + TI + +N
Sbjct: 32 EYDVVIVGGGGHGLATAYYLAKEHGITNVAVLEK----GWIGGGNTARNTTI----VRSN 83
Query: 64 YTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQ-KMAIGVGDEECEFMKKRYESFKEIF 122
Y +++ + A K + L++ L V+F + M + ++ ++R + +
Sbjct: 84 YLWDESAALYEKAMKLWE-GLSQDLNYNVMFSQRGVMNLAHTLQDVRDTERRVNANRLNG 142
Query: 123 VGLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLK 182
V E +IKE+EP + L A ++G +++ ++ F A +
Sbjct: 143 VDAEFLTPAQIKEIEPAINLNA-----RYPVLGASFQRRGGVARHDAVAWGFARGA--DR 195
Query: 183 PNNQVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCL 242
+ N +V I + + + AK V V A LA G L L
Sbjct: 196 AGIDIIQNCQVTGIRREGGAVVGVETARGFIKAKKVAVVAAGNTTTLADMAGIRLPLESH 255
Query: 243 PVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIG 287
P+ L+ + V N + AVH KG IG
Sbjct: 256 PLQA-------LVSEPIKPVVNTVVMSNAVHAYISQSDKGDLVIG 293
>ref|NP_346659.1| (NC_003030) Predicted dehydrogenase with iron-sulfur domain
[Clostridium acetobutylicum]
gb|AAK77999.1|AE007514_5 (AE007514) Predicted dehydrogenase with iron-sulfur domain
[Clostridium acetobutylicum]
Length = 467
Score = 43.5 bits (101), Expect = 0.005
Identities = 24/62 (38%), Positives = 40/62 (63%), Gaps = 5/62 (8%)
Query: 3 MEFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIET 62
M++D +I+GGG+ GC+ Y LS+YS V+++EK ++ +S NS ++DG IE+
Sbjct: 1 MDYDVLILGGGIIGCSIAYELSKYS--LNVSLIEKEYEIGDDTSI--VNSDLVYDG-IES 55
Query: 63 NY 64
Y
Sbjct: 56 KY 57
>ref|NP_519222.1| (NC_003295) PROBABLE SARCOSINE OXIDASE (BETA SUBUNIT)
OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
emb|CAD14803.1| (AL646062) PROBABLE SARCOSINE OXIDASE (BETA SUBUNIT) OXIDOREDUCTASE
PROTEIN [Ralstonia solanacearum]
Length = 414
Score = 42.7 bits (99), Expect = 0.009
Identities = 42/163 (25%), Positives = 76/163 (45%), Gaps = 22/163 (13%)
Query: 4 EFDAVIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETN 63
E+D VI+GGG G AT Y L++ + VA++EK I A + TI + +N
Sbjct: 32 EYDVVIVGGGGHGLATAYYLAKEHGITNVAVLEK----GWIGGGNTARNTTI----VRSN 83
Query: 64 YTPEKAKKVRLSAYKTRQYALNKGLQNEVIFETQ-KMAIGVGDEECEFMKKRYESFKEIF 122
Y +++ + A K + L++ L V+F + M + ++ ++R + +
Sbjct: 84 YLWDESAALYEKAMKLWE-GLSQDLNYNVMFSQRGVMNLAHTLQDVRDTERRVNANRLNG 142
Query: 123 VGLEEFDKQKIKELEPNV-------ILGAN-----GIDRHENI 153
V E +IK +EP + +LGA+ G+ RH+ +
Sbjct: 143 VDAEFLTPAQIKAIEPTINLNSRYPVLGASIQRRAGVARHDAV 185
>ref|NP_394582.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC12250.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 377
Score = 42.7 bits (99), Expect = 0.009
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 36/300 (12%)
Query: 8 VIIGGGVSGCATFYTLSEYSSLKRVAIVEKCSKLAQISSSAKANSQTIHDGSIETNYTPE 67
V+IG GV G A + LS+YS V + EK + +SS NS +H G Y P+
Sbjct: 13 VVIGAGVVGLAVAFELSKYSD--SVYVFEKNKIIGAETSS--HNSGVVHSGI----YYPK 64
Query: 68 KAKKVRLSAYKTR---QYALNKGLQNEVIFETQKMAIGVGDEECEFMKKRYESFKEIFV- 123
+ K LS Q G+ + K+ + GD E ++ + +
Sbjct: 65 GSLKAELSIKGNAMLYQLCREHGIPCK---RLGKLIVANGDRELRELEGLMRNGNNNGIE 121
Query: 124 GLEEFDKQKIKELEPNVILGANGIDRHENIIGHGYRKDWSTMNFAKLSENFVEEALKLKP 183
GLE D +K +EP++ A II + MN+ A K
Sbjct: 122 GLEMLDGDGVKRMEPSIKAEAAIYVPSTGII-----EPTELMNYF--------HAGFTKN 168
Query: 184 NNQVFLNFKVKKIEKRNDTYAVISEDAEE---VYAKFVLVNAGSYALPLAQSMGYGLD-L 239
V LN +V I + + Y + A + V ++ +AG ++ +A+ G +D L
Sbjct: 169 GGIVALNTEVTGIRQSKEGYIIDGISAGQKFSVACNTIINSAGLHSDRIAEMAGLDVDAL 228
Query: 240 G--CLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALTMPKLE 297
G V G ++ + ++ P+ +H PD + G R+GP A + +L+
Sbjct: 229 GYRLNYVKGDYFRISGKPPVRMLVYPIPEASGLGIHLTPD--LSGSVRLGPNAYHVVRLD 286
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,680,807
Number of Sequences: 1026957
Number of extensions: 12016400
Number of successful extensions: 31289
Number of sequences better than 1.0e-02: 53
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 31230
Number of HSP's gapped (non-prelim): 58
length of query: 450
length of database: 324,149,939
effective HSP length: 124
effective length of query: 326
effective length of database: 196,807,271
effective search space: 64159170346
effective search space used: 64159170346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 99 (42.7 bits)