BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645468|ref|NP_207642.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207642.1| (NC_000915) hypothetical protein [Helicoba... 194 1e-49
gb|AAL78772.1|AF326621_1 (AF326621) HP790-like protein [Hel... 50 7e-06
gb|AAL78774.1|AF326623_1 (AF326623) JHP726-like protein [He... 50 7e-06
gb|AAL78775.1|AF326624_1 (AF326624) HP848-like protein [Hel... 48 3e-05
ref|NP_223444.1| (NC_000921) putative TYPE I RESTRICTION EN... 46 1e-04
ref|NP_207583.1| (NC_000915) anti-codon nuclease masking ag... 45 1e-04
gb|AAL78773.1|AF326622_1 (AF326622) JHP785-like protein [He... 45 2e-04
gb|AAL78769.1|AF326619_1 (AF326619) HP848-like protein [Hel... 44 3e-04
ref|NP_223503.1| (NC_000921) TYPE I RESTRICTIONENZYME (SPEC... 44 5e-04
gb|AAL78776.1|AF326625_1 (AF326625) HP790-like protein [Hel... 41 0.002
gb|AAL78768.1|AF326617_1 (AF326617) HP790-like protein [Hel... 40 0.004
>ref|NP_207642.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64626 hypothetical protein HP0849 - Helicobacter pylori (strain 26695)
gb|AAD07912.1| (AE000596) H. pylori predicted coding region HP0849 [Helicobacter
pylori 26695]
Length = 96
Score = 194 bits (494), Expect = 1e-49
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYVTVRELEEYTI 60
MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYVTVRELEEYTI
Sbjct: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYVTVRELEEYTI 60
Query: 61 KFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLELEQ 96
KFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLELEQ
Sbjct: 61 KFTHQTDRIDDNALSLCLKRSNLEKDDIFYSLELEQ 96
>gb|AAL78772.1|AF326621_1 (AF326621) HP790-like protein [Helicobacter pylori]
Length = 449
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/24 (95%), Positives = 24/24 (99%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
MHKIE+LLQTLAPKGVEFRKLGDI
Sbjct: 1 MHKIERLLQTLAPKGVEFRKLGDI 24
Score = 40.4 bits (93), Expect = 0.004
Identities = 19/34 (55%), Positives = 25/34 (72%), Gaps = 1/34 (2%)
Query: 3 KIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRK 36
+++ LLQTLAP GVEFRKLG+ + +K G P K
Sbjct: 231 RLKALLQTLAPNGVEFRKLGE-VCEIKNGYTPSK 263
>gb|AAL78774.1|AF326623_1 (AF326623) JHP726-like protein [Helicobacter pylori]
Length = 424
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/24 (95%), Positives = 24/24 (99%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
MHKIE+LLQTLAPKGVEFRKLGDI
Sbjct: 1 MHKIERLLQTLAPKGVEFRKLGDI 24
>gb|AAL78775.1|AF326624_1 (AF326624) HP848-like protein [Helicobacter pylori]
Length = 436
Score = 47.8 bits (112), Expect = 3e-05
Identities = 21/24 (87%), Positives = 24/24 (99%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
MHKIE+LLQTLAPKGVEFRKLG++
Sbjct: 1 MHKIERLLQTLAPKGVEFRKLGEV 24
>ref|NP_223444.1| (NC_000921) putative TYPE I RESTRICTION ENZYME (SPECIFICITY
SUBUNIT) [Helicobacter pylori J99]
pir||D71895 probable type I restriction enzyme (specificity chain) -
Helicobacter pylori (strain J99)
gb|AAD06303.1| (AE001504) putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 45.8 bits (107), Expect = 1e-04
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI--------ILSLKTGLNPRKFFKLNTPNANNYYVTV 52
M+KIE LL TLAPKGVEFRKLGDI S K+ KF+ NN + +
Sbjct: 1 MNKIELLLHTLAPKGVEFRKLGDIGEFYGGLVGKSKKSFSQGNKFYVPYINVFNNPQLDL 60
Query: 53 RELEEYTI--------------KFTHQTDRIDDNALSLCLKRSNLEKD 86
LE I FT ++ ++D A+S C+ +E+D
Sbjct: 61 NALESVQIGDKEKQNTIQLGDVLFTGSSENLEDCAMS-CVVTQKIEED 107
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/22 (81%), Positives = 21/22 (94%)
Query: 3 KIEQLLQTLAPKGVEFRKLGDI 24
+++QLL TLAPKGVEFRKLGDI
Sbjct: 237 RLKQLLHTLAPKGVEFRKLGDI 258
>ref|NP_207583.1| (NC_000915) anti-codon nuclease masking agent (prrB)
[Helicobacter pylori 26695]
pir||F64618 anti-codon nuclease masking agent - Helicobacter pylori (strain
26695)
gb|AAD07838.1| (AE000591) anti-codon nuclease masking agent (prrB) [Helicobacter
pylori 26695]
Length = 431
Score = 45.4 bits (106), Expect = 1e-04
Identities = 22/36 (61%), Positives = 27/36 (74%), Gaps = 1/36 (2%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRK 36
MHKIE+LLQTLAPKGVEF+ L + + +K G P K
Sbjct: 1 MHKIERLLQTLAPKGVEFKTLEE-VFEIKNGYTPSK 35
>gb|AAL78773.1|AF326622_1 (AF326622) JHP785-like protein [Helicobacter pylori]
Length = 200
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
MHKIE+LLQTLAPKGV FRKLG++
Sbjct: 1 MHKIERLLQTLAPKGVGFRKLGEV 24
>gb|AAL78769.1|AF326619_1 (AF326619) HP848-like protein [Helicobacter pylori]
Length = 413
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/24 (83%), Positives = 24/24 (99%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
M+KIE+LLQTLAPKGVEFRKLG++
Sbjct: 1 MNKIERLLQTLAPKGVEFRKLGEM 24
>ref|NP_223503.1| (NC_000921) TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
pir||D71886 type I restriction enzyme (specificity chain) - Helicobacter
pylori (strain J99)
gb|AAD06377.1| (AE001509) TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 207
Score = 43.5 bits (101), Expect = 5e-04
Identities = 29/72 (40%), Positives = 39/72 (53%), Gaps = 5/72 (6%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRKFFKLNTPNANNYYVTV---RELEE 57
M+KIE+LLQTLAPKGV FRKLG++ S T K +++ Y + REL
Sbjct: 1 MNKIERLLQTLAPKGVGFRKLGEVCES--TNKKTLKISEVSEVKNKGMYPVINSGRELYG 58
Query: 58 YTIKFTHQTDRI 69
Y F + + I
Sbjct: 59 YYHDFNNDGENI 70
>gb|AAL78776.1|AF326625_1 (AF326625) HP790-like protein [Helicobacter pylori]
Length = 435
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/36 (58%), Positives = 26/36 (71%), Gaps = 1/36 (2%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDIILSLKTGLNPRK 36
M+KIE+LL TLAPKGVEF+ L + I +K G P K
Sbjct: 1 MNKIERLLHTLAPKGVEFKTLEE-IFEIKNGYTPSK 35
>gb|AAL78768.1|AF326617_1 (AF326617) HP790-like protein [Helicobacter pylori]
Length = 409
Score = 40.4 bits (93), Expect = 0.004
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 1 MHKIEQLLQTLAPKGVEFRKLGDI 24
M+KIE+LL TLAPKGV FRKLG++
Sbjct: 1 MNKIERLLHTLAPKGVGFRKLGEV 24
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,833,747
Number of Sequences: 1026957
Number of extensions: 2079041
Number of successful extensions: 8853
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8835
Number of HSP's gapped (non-prelim): 19
length of query: 96
length of database: 324,149,939
effective HSP length: 72
effective length of query: 24
effective length of database: 250,209,035
effective search space: 6005016840
effective search space used: 6005016840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)