BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645471|ref|NP_207645.1| hypothetical protein
[Helicobacter pylori 26695]
(313 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207645.1| (NC_000915) hypothetical protein [Helicoba... 633 0.0
ref|NP_223506.1| (NC_000921) putative [Helicobacter pylori ... 537 e-152
ref|NP_662285.1| (NC_002932) conserved hypothetical protein... 179 4e-44
ref|NP_282730.1| (NC_002163) hypothetical protein Cj1602 [C... 155 7e-37
gb|AAM33068.1|AF446009_1 (AF446009) restriction endonucleas... 127 2e-28
ref|NP_251420.1| (NC_002516) hypothetical protein [Pseudomo... 103 2e-21
ref|NP_519007.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 102 6e-21
ref|NP_300024.1| (NC_002488) hypothetical protein [Xylella ... 97 2e-19
>ref|NP_207645.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64626 hypothetical protein HP0852 - Helicobacter pylori (strain 26695)
gb|AAD07913.1| (AE000596) H. pylori predicted coding region HP0852 [Helicobacter
pylori 26695]
Length = 313
Score = 633 bits (1633), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MKPQDIEIVQSVLEITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTAL 60
MKPQDIEIVQSVLEITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTAL
Sbjct: 1 MKPQDIEIVQSVLEITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTAL 60
Query: 61 NKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPSSKIAHERDLHPFLTYMAINNEN 120
NKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPSSKIAHERDLHPFLTYMAINNEN
Sbjct: 61 NKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPSSKIAHERDLHPFLTYMAINNEN 120
Query: 121 LKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSF 180
LKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSF
Sbjct: 121 LKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSF 180
Query: 181 ELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFGIGVIDL 240
ELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFGIGVIDL
Sbjct: 181 ELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFGIGVIDL 240
Query: 241 RTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKDEFDEVK 300
RTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKDEFDEVK
Sbjct: 241 RTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKDEFDEVK 300
Query: 301 KKEELYPNPSLSF 313
KKEELYPNPSLSF
Sbjct: 301 KKEELYPNPSLSF 313
>ref|NP_223506.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71886 hypothetical protein jhp0788 - Helicobacter pylori (strain J99)
gb|AAD06380.1| (AE001509) putative [Helicobacter pylori J99]
Length = 313
Score = 537 bits (1384), Expect = e-152
Identities = 273/313 (87%), Positives = 284/313 (90%), Gaps = 6/313 (1%)
Query: 1 MKPQDIEIVQSVLE-ITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTA 59
MKPQDIEI+QSVLE I PIK TE+YDKAKELFEKGEI +MFD GG+TPHQSVS+ IYTA
Sbjct: 1 MKPQDIEIIQSVLEAIKEPIKVTEIYDKAKELFEKGEIESMFDYGGETPHQSVSAAIYTA 60
Query: 60 LNKGEELPFKKVQENPTLIALKDAAKELGLDAQKISAPS-----SKIAHERDLHPFLTYM 114
LNKGEELPF KVQE P LIALK AAKE L+ +K S +KI HERDLHPFLTYM
Sbjct: 61 LNKGEELPFLKVQEKPVLIALKGAAKEPVLNIEKPGVSSVKIVHNKIMHERDLHPFLTYM 120
Query: 115 AINNENLKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP 174
A NENLKCYTKTIFHEESSKS KGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP
Sbjct: 121 AYYNENLKCYTKTIFHEESSKSPKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLP 180
Query: 175 IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG 234
IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG
Sbjct: 181 IKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFG 240
Query: 235 IGVIDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSVVDYDPNHPQRYKD 294
IGVIDLRT+EDKSAILLNAK+KEKIDYTVA ELSAKNEKFSGFLKSVVDYDPNHP RYKD
Sbjct: 241 IGVIDLRTDEDKSAILLNAKHKEKIDYTVALELSAKNEKFSGFLKSVVDYDPNHPHRYKD 300
Query: 295 EFDEVKKKEELYP 307
EFDE+KKKEELYP
Sbjct: 301 EFDEIKKKEELYP 313
>ref|NP_662285.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72627.1| (AE012897) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 322
Score = 179 bits (454), Expect = 4e-44
Identities = 118/315 (37%), Positives = 177/315 (55%), Gaps = 24/315 (7%)
Query: 6 IEIVQSVLEI-TGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTALNKGE 64
+++ VL++ T P+ EV+ KE +T+ GKTP QS+ + +Y + E
Sbjct: 7 LDLAYDVLKVATQPLTYQEVWQAGKE----NGLTDKIKTSGKTPWQSLGAQLYVEVRDNE 62
Query: 65 ELPFKKVQENPTLIALKDAAKELGLDA-QKISAPSSK------IAHERDLHPFLTYMAIN 117
+ F KV + P LKD A EL DA KI SK HERD+HP LTY A
Sbjct: 63 DSRFMKVGKRPARFFLKDRAAELASDAVAKIEKEESKKKEKKTAYHERDIHPLLTYFAYA 122
Query: 118 NENLK----CYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTL 173
N + +TKTIFHE S +S G + W++PD+VG +L + ++I F++ D
Sbjct: 123 NPSFNRGRSIFTKTIFHERSQRS--GYNEWIHPDIVGF-YLPLDDWRPDVIEFNRLSDNN 179
Query: 174 PIKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASF 233
+KL SFE+KK ++ N RE YFQA+SNSSWA+EGYLV I + + + L+RL +SF
Sbjct: 180 SLKLFSFEVKKSLTKANYREAYFQAVSNSSWAHEGYLVAAEI-LQDDEFLAELERLASSF 238
Query: 234 GIGVIDLRTNE-DKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSV-VDYDPNHPQR 291
GIG+I L + D S+IL A+ ++ +D+ ++L +N F FL+ V +D++ +
Sbjct: 239 GIGIIHLDPIDIDSSSILYPARVRDILDWETINKLCEQNTDFEKFLQDVKIDFESK--RI 296
Query: 292 YKDEFDEVKKKEELY 306
++ EFDE+ K Y
Sbjct: 297 HRAEFDEIVKDIRKY 311
>ref|NP_282730.1| (NC_002163) hypothetical protein Cj1602 [Campylobacter jejuni]
pir||H81255 hypothetical protein Cj1602 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73590.1| (AL139079) hypothetical protein Cj1602 [Campylobacter jejuni]
Length = 318
Score = 155 bits (391), Expect = 7e-37
Identities = 106/295 (35%), Positives = 154/295 (51%), Gaps = 16/295 (5%)
Query: 18 PIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYIYTALNKGEELP-FKKVQENPT 76
P+ E++ KA E +++++ G+TP ++ + IY + + + F K + PT
Sbjct: 21 PLSVNEIWQKALEQGLDKKLSSI----GQTPIATLGARIYVDIKELQHNSLFIKASQKPT 76
Query: 77 LIALKDAAKELGLDAQKISAPSSKIA----HERDLHPFLTYMAINNENLKCYTKTIFHEE 132
LK+ EL K + K HERDLHP L N + KTI+HE+
Sbjct: 77 TFWLKERENELLKLDNKNEITNEKQEKNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQ 136
Query: 133 SSKSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKLVSFELKKEISVHNCR 192
S K G D+W YPD+VGV F + + E I + KL SFELK ++ N +
Sbjct: 137 SKKGKGGEDKWNYPDIVGVYFPYDDYEKET-ITLLENIKQNSYKLFSFELKIALNFSNLK 195
Query: 193 ECYFQAISNSSWANEGYLVG-RHIDTHNPQLMDLLKRLHASFGIGVIDLRTNEDKSAILL 251
ECYFQA+SNSSWANEGYLV + ID+ +++ L+RL+ SFGIGVI L + S IL+
Sbjct: 196 ECYFQAVSNSSWANEGYLVVLQEIDS---EVLSELRRLNQSFGIGVIKLEKDISNSQILI 252
Query: 252 NAKYKEKIDYTVASELSAKNEKFSGFLKSV-VDYDPNHPQRYKDEFDEVKKKEEL 305
+AK KE +D + L KN F F+ + + + FDE+K EE+
Sbjct: 253 SAKEKE-LDIQTLNMLINKNPNFKEFIDDINKQIKVGKEAKIQANFDEIKSDEEM 306
>gb|AAM33068.1|AF446009_1 (AF446009) restriction endonuclease-replacing gene A [Helicobacter
pylori]
Length = 331
Score = 127 bits (319), Expect = 2e-28
Identities = 91/268 (33%), Positives = 139/268 (50%), Gaps = 24/268 (8%)
Query: 7 EIVQSVLE-ITGPIKPTEVYDKAKELFEKGEITNMFDCGGKTPHQSVSSYI-------YT 58
E+ + VLE P+ P E++++A E+ E ++ GKTP ++ S + Y
Sbjct: 5 ELGKKVLEQAKSPLSPKEIWERACEMGWDKERPSI----GKTPWYTIGSDLGNDKKQFYV 60
Query: 59 ALNKGEELPF---KKVQENPTLIALKDAAKELGLDAQKISAPSSKIA-HERDLHPFLTYM 114
A +G+ + + +E P L K+ G +A +I+ +ERDLHP +
Sbjct: 61 AHKQGQAHFYWLKSREREFPPQETLNAKEKDDGQSGCLDAAKKQEISFNERDLHPLIVKF 120
Query: 115 AINNENLKCYTKTIFHEESSKSIKGMDRWLYPDMVGVRFLHAELS-----NENLIAFSKK 169
+ N KTI+HE K KG W +P++VGV F + + S + ++ F
Sbjct: 121 LSEDPNFNLLCKTIYHERCKKDKKGKGEWNFPNIVGVYFPYNKYSPFDKYDGEILKFLHH 180
Query: 170 FDTLPIKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRL 229
KL SFELK + + N +E YFQA+SNSSW NEGYLV ++ID +++ L+RL
Sbjct: 181 TGQKKHKLFSFELKVNLKLTNLKESYFQAVSNSSWGNEGYLVVKNID---DEVLGELRRL 237
Query: 230 HASFGIGVIDLRTNEDKSAILLNAKYKE 257
+ SFGIGVI L + S ILL A+ +E
Sbjct: 238 NQSFGIGVIKLESEISNSKILLPARERE 265
>ref|NP_251420.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||A83304 hypothetical protein PA2730 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06118.1|AE004701_1 (AE004701) hypothetical protein [Pseudomonas aeruginosa]
Length = 317
Score = 103 bits (258), Expect = 2e-21
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Query: 104 ERDLHPFLTYMAINNENLKCYTKTIFHEESS-KSIKGMDRWLYPDMVGVRFLHAELSNEN 162
E L+P L+ E ++K I + SS K +RWLYPDMVG++ L A+ E
Sbjct: 120 EHALYPLLSQYLW--EEFGVFSKRINEKRSSNKRGPNGNRWLYPDMVGMQDLGADWHRE- 176
Query: 163 LIAFSKKFDTLPIKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQL 222
+ K++ KL SFE+K I+ N REC+FQA+SNSSW+N GYLV + +
Sbjct: 177 VRDCVKQYSDKRTKLWSFEVKLLINRSNIRECFFQAVSNSSWSNFGYLVAAEVS--GQET 234
Query: 223 MDLLKRLHASFGIGVIDLRT-NEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSV 281
+ L+ L A+ GIG I L N S +L+ A+ ++ ID+ +A+ L+ +N F ++K V
Sbjct: 235 LKELRMLFAAHGIGFIRLDVDNPADSQVLIPARERDAIDWDMANRLATENRDFLNYVKQV 294
Query: 282 VDYDPNHPQRYKD 294
+ R+KD
Sbjct: 295 KQFYQTGEARFKD 307
>ref|NP_519007.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14588.1| (AL646061) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 315
Score = 102 bits (254), Expect = 6e-21
Identities = 65/164 (39%), Positives = 96/164 (57%), Gaps = 5/164 (3%)
Query: 119 ENLKCYTKTIFHEESS-KSIKGMDRWLYPDMVGVRFLHAELSNENLIAFSKKFDTLPIKL 177
E L YTK I + SS K +RWL+PD+VG+ L E E + K++ KL
Sbjct: 133 EELDIYTKRIDEKRSSNKRGSNGNRWLFPDLVGMEDLGREWHRE-VQDCVKQYAGQRTKL 191
Query: 178 VSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQLMDLLKRLHASFGIGV 237
SFE+K ++ N RE +FQA+SNSSWAN GYLV + + + +L +H GIG+
Sbjct: 192 WSFEVKLLLNRSNVREYFFQAVSNSSWANFGYLVAGEVQADTMKELRMLSGVH---GIGL 248
Query: 238 IDLRTNEDKSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSV 281
I L TN +S IL+ A+ + +ID+ A+ L+A+N+ F ++K V
Sbjct: 249 IRLDTNPSESEILIPARERPEIDWESANRLAAENKDFLDYIKLV 292
>ref|NP_300024.1| (NC_002488) hypothetical protein [Xylella fastidiosa 9a5c]
pir||G82519 hypothetical protein XF2747 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF85532.1|AE004081_4 (AE004081) hypothetical protein [Xylella fastidiosa 9a5c]
Length = 366
Score = 97.4 bits (241), Expect = 2e-19
Identities = 65/183 (35%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 104 ERDLHPFLTYMAINNENLKCYTKTIFHEESS-KSIKGMDRWLYPDMVGVRFLHAELSNEN 162
E L+P L+ ++ Y K I + SS K +RWLYPD+VG++ L E ++
Sbjct: 171 EHALYPLLSRYL--SDECGVYAKRIDEKRSSNKRGPNGNRWLYPDVVGMQDLGVEW-HQQ 227
Query: 163 LIAFSKKFDTLPIKLVSFELKKEISVHNCRECYFQAISNSSWANEGYLVGRHIDTHNPQL 222
+ + KL SFE+K I++ N REC+FQ +SNSSWAN YLV I+ P
Sbjct: 228 VRDCVNHYSDKRTKLWSFEVKLLINMSNVRECFFQTVSNSSWANFAYLVAAEIE--GPHT 285
Query: 223 MDLLKRLHASFGIGVIDLRTNED-KSAILLNAKYKEKIDYTVASELSAKNEKFSGFLKSV 281
+ L+ L A+ GIG+I L ++ S IL+ A+ ++ ID+ +A+ L+ +N F ++K V
Sbjct: 286 LKELRMLFAAHGIGLIKLDSDTPADSQILIPARERDDIDWDMANRLATENRDFLEYIKCV 345
Query: 282 VDY 284
+
Sbjct: 346 KQF 348
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,890,668
Number of Sequences: 1026957
Number of extensions: 8322168
Number of successful extensions: 27524
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27500
Number of HSP's gapped (non-prelim): 8
length of query: 313
length of database: 324,149,939
effective HSP length: 121
effective length of query: 192
effective length of database: 199,888,142
effective search space: 38378523264
effective search space used: 38378523264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 97 (42.0 bits)