BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645475|ref|NP_207650.1| hypothetical protein
[Helicobacter pylori 26695]
         (364 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207650.1|  (NC_000915) hypothetical protein [Helicoba...   746  0.0
gb|AAK12964.1|  (AF343914) unknown [Campylobacter jejuni]          74  3e-12

>ref|NP_207650.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64626 hypothetical protein HP0856 - Helicobacter pylori (strain 26695)
 gb|AAD07914.1| (AE000596) H. pylori predicted coding region HP0856 [Helicobacter
           pylori 26695]
          Length = 364

 Score =  746 bits (1927), Expect = 0.0
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MEFYKKQTLIIVSFCLSLLIGVGLFNYLIDPFEYFRKAKYPIDWHERVGGTLLSFEGVIK 60
           MEFYKKQTLIIVSFCLSLLIGVGLFNYLIDPFEYFRKAKYPIDWHERVGGTLLSFEGVIK
Sbjct: 1   MEFYKKQTLIIVSFCLSLLIGVGLFNYLIDPFEYFRKAKYPIDWHERVGGTLLSFEGVIK 60

Query: 61  HYPYNNILIGTSISLNFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKHQPVNTV 120
           HYPYNNILIGTSISLNFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKHQPVNTV
Sbjct: 61  HYPYNNILIGTSISLNFSLKDIHDLLGLKDPIKLTVSGMNIGEILSLLPFAFKHQPVNTV 120

Query: 121 AMDLAFFEFILNKESKYFFEYPYFTGGFVYLYNFGVLKNALFYFSTNYLKIKEKTFCKLN 180
           AMDLAFFEFILNKESKYFFEYPYFTGGFVYLYNFGVLKNALFYFSTNYLKIKEKTFCKLN
Sbjct: 121 AMDLAFFEFILNKESKYFFEYPYFTGGFVYLYNFGVLKNALFYFSTNYLKIKEKTFCKLN 180

Query: 181 SWFQLYDFCNSVLNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNPNQLAIDEENAYKIT 240
           SWFQLYDFCNSVLNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNPNQLAIDEENAYKIT
Sbjct: 181 SWFQLYDFCNSVLNRYDFDFMFSHNNPYDYSLDNVKRSYLSALKNPNQLAIDEENAYKIT 240

Query: 241 KQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHTILTRNLNTIHNALKTLLKYPNVEIHDL 300
           KQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHTILTRNLNTIHNALKTLLKYPNVEIHDL
Sbjct: 241 KQLEDFIQKHSDKHFILWTRTDSLLKYKVYNHTILTRNLNTIHNALKTLLKYPNVEIHDL 300

Query: 301 RTMPLAKEIKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQIPK 360
           RTMPLAKEIKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQIPK
Sbjct: 301 RTMPLAKEIKRYKDIRHYDPIGSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQIPK 360

Query: 361 EIQN 364
           EIQN
Sbjct: 361 EIQN 364



>gb|AAK12964.1| (AF343914) unknown [Campylobacter jejuni]
          Length = 357

 Score = 73.9 bits (180), Expect = 3e-12
 Identities = 81/337 (24%), Positives = 137/337 (40%), Gaps = 29/337 (8%)

Query: 34  YFRKAKYPIDWHERVGGTLLSFEGVIKHYPYNNILIGTSISLNFSLKDIHDLLGLKDPIK 93
           YFRK  Y  D         +   G+I +  +++ +IGTS+  N S K+ +  LG  + I 
Sbjct: 26  YFRKETYMKDMR-------MQARGLILYKDFDSAIIGTSMLENTSAKEANKKLG-GNWIN 77

Query: 94  LTVSGMNIGEILSLLPFAFKHQPVNTVAMDL---AFFEFILNKESKYFFEYPYFTGGFVY 150
           L++ G        +L + FKH+ +  +   L   A  E    K+  +   Y   T     
Sbjct: 78  LSLGGSTFALRAVILDYLFKHKDIKNIIYSLDIRALNELETPKDKNFISLYNDKTIDLFK 137

Query: 151 LYNFGVLKNALFYFSTNYLKIKEKTFCKLNSWFQLYDFCNSVLNRYDFDFMFSHNNPYDY 210
           LY      N   +FS     I +     L +WF        + N+  F  +   +  + +
Sbjct: 138 LYLSSRFINCAIFFSKKEKCIGKDNLDTLTNWF--------LENKNHFGGIEYWSKEWWH 189

Query: 211 SLDNVKRSYLSALKNPNQLAIDEENAYKITKQ-LEDFIQKHSDKHFILWTRTDSLLKYKV 269
              N +   L A        ID  +    TK+ L  FI+K+    F L   + S L Y+ 
Sbjct: 190 D-KNFQNEILQAQNFQPNFDIDISHFKNYTKKYLLSFIKKYQKTQFYLIIPSYSRLNYRK 248

Query: 270 YNH-------TILTRNLNTIHN-ALKTLLKYPNVEIHDLRTMPLAKEIKRYKDIRHYDPI 321
            ++       ++L  N   I +  ++   KYPNV+I+    +  A  IK YKD  HY+  
Sbjct: 249 LSYGEYYNKDSVLFSNYYAILSWIIQETQKYPNVKIYGFDDLDYADNIKNYKDPAHYNTD 308

Query: 322 GSKEVLQAIASKKYLLTPNNIDSFKQKLIQTIENYQI 358
            +   L AI    ++L   NI  +   + + I+ + +
Sbjct: 309 MNSMQLNAIRDNTHILNTQNIVKYLNTMERKIKEFDL 345



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,206,140
Number of Sequences: 1026957
Number of extensions: 10577835
Number of successful extensions: 25431
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25429
Number of HSP's gapped (non-prelim): 2
length of query: 364
length of database: 324,149,939
effective HSP length: 122
effective length of query: 242
effective length of database: 198,861,185
effective search space: 48124406770
effective search space used: 48124406770
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 98 (42.4 bits)