BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644717|ref|NP_206887.1| hypothetical protein
[Helicobacter pylori 26695]
(457 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206887.1| (NC_000915) hypothetical protein [Helicoba... 929 0.0
ref|NP_222802.1| (NC_000921) putative [Helicobacter pylori ... 824 0.0
gb|AAC64857.1| (AF009177) unknown [Helicobacter pylori] 207 2e-52
ref|NP_282098.1| (NC_002163) putative lipoprotein [Campylob... 176 7e-43
ref|NP_460896.1| (NC_003197) putative cell wall-associated ... 127 3e-28
ref|NP_456505.1| (NC_003198) putative exported protein [Sal... 124 2e-27
ref|NP_639151.1| (NC_003902) conserved hypothetical protein... 80 4e-14
ref|NP_644167.1| (NC_003919) conserved hypothetical protein... 71 2e-11
ref|NP_441569.1| (NC_000911) unknown protein [Synechocystis... 49 9e-05
>ref|NP_206887.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64530 hypothetical protein HP0087 - Helicobacter pylori (strain 26695)
gb|AAD07159.1| (AE000530) H. pylori predicted coding region HP0087 [Helicobacter
pylori 26695]
Length = 457
Score = 929 bits (2401), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES
Sbjct: 1 MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
Query: 61 YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS 120
YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS
Sbjct: 61 YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS 120
Query: 121 VKIRAVVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQ 180
VKIRAVVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQ
Sbjct: 121 VKIRAVVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQ 180
Query: 181 SSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALI 240
SSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALI
Sbjct: 181 SSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALI 240
Query: 241 PQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTML 300
PQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTML
Sbjct: 241 PQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTML 300
Query: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL 360
GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL
Sbjct: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL 360
Query: 361 KNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
KNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA
Sbjct: 361 KNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
Query: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN 457
EEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN
Sbjct: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN 457
>ref|NP_222802.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71976 hypothetical protein jhp0080 - Helicobacter pylori (strain J99)
gb|AAD05664.1| (AE001447) putative [Helicobacter pylori J99]
Length = 457
Score = 824 bits (2128), Expect = 0.0
Identities = 405/457 (88%), Positives = 426/457 (92%)
Query: 1 MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
MRYFLVVFLFLFVGC KKDFTLKDLSLPQEASSYLASSQN S+NNQSIDPQALRENLKES
Sbjct: 1 MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNSSHNNQSIDPQALRENLKES 60
Query: 61 YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS 120
YLKAWYSPWLD KVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFND LIK+MDIE YPS
Sbjct: 61 YLKAWYSPWLDAKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKAFNDELIKNMDIERYPS 120
Query: 121 VKIRAVVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQ 180
KI+AVV R++DVRAVPTNKPYYLS KGYPFDR+QNSL+F GTPVLIT FN DKTY +Q
Sbjct: 121 TKIKAVVVRNNDVRAVPTNKPYYLSPKGYPFDRFQNSLVFPGTPVLITPFNPDKTYPPLQ 180
Query: 181 SSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALI 240
SSFVYGWIKVS+L YM DK+IELLT LK+Y MPIK+K PLYTDYG+FY +A++GELF LI
Sbjct: 181 SSFVYGWIKVSELAYMRDKEIELLTKLKNYDMPIKEKNPLYTDYGEFYPHAKIGELFPLI 240
Query: 241 PQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTML 300
PQ Q Q P KKELKAYGFL+DAKGYAALQSV L+EKDFFVFPKAF SE MAYFI+TML
Sbjct: 241 PQIQNASQIPPKKELKAYGFLKDAKGYAALQSVFLDEKDFFVFPKAFTSEIMAYFINTML 300
Query: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYIL 360
GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYI+
Sbjct: 301 GQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYII 360
Query: 361 KNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
KNATPFGTLIYLKGHIMLYLG NHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA
Sbjct: 361 KNATPFGTLIYLKGHIMLYLGERNHQAIVAHSIWSVQTQKHFKTLSHKIGGVVITSLWLA 420
Query: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVNKTSSPLNAN 457
EEHNGAFSKKKLLIDRVLGMSDLKDFV+KTSSPLNAN
Sbjct: 421 EEHNGAFSKKKLLIDRVLGMSDLKDFVHKTSSPLNAN 457
>gb|AAC64857.1| (AF009177) unknown [Helicobacter pylori]
Length = 104
Score = 207 bits (528), Expect = 2e-52
Identities = 100/104 (96%), Positives = 102/104 (97%)
Query: 1 MRYFLVVFLFLFVGCTKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
MRYFLVVFLFLFVGC KKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES
Sbjct: 1 MRYFLVVFLFLFVGCMKKDFTLKDLSLPQEASSYLASSQNGSNNNQSIDPQALRENLKES 60
Query: 61 YLKAWYSPWLDMKVKSNKKEVFWILKEMNKSTGYGEDLKPNAKA 104
YLKAWYSPWLD K+KSNKKEVFWILKEMNKSTGYGE+LKPNAKA
Sbjct: 61 YLKAWYSPWLDAKIKSNKKEVFWILKEMNKSTGYGENLKPNAKA 104
>ref|NP_282098.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
pir||A81369 probable lipoprotein Cj0946 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73203.1| (AL139076) putative lipoprotein [Campylobacter jejuni]
Length = 448
Score = 176 bits (445), Expect = 7e-43
Identities = 130/459 (28%), Positives = 227/459 (49%), Gaps = 48/459 (10%)
Query: 3 YFLVVFLFLFVGCTKKDFTL---KDLSLPQEASSYLASSQNGSNNNQSIDPQ-ALRENLK 58
YF + LFL C+ K+ T ++L E Y+ N +I PQ A N
Sbjct: 6 YFTFIVLFL-TACSTKNLTSLHRENLEQKNENQHYVKLEYE---QNVNILPQFAYDINFD 61
Query: 59 -ESYLKAWYSPWLDMKVKSNKKEVFWI--LKEMNKSTGYGEDLKPNAKAFNDALIKSMDI 115
+ Y K +++PW D + +FW L +K+T Y + + ++ I + +I
Sbjct: 62 AKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFFNKQIIPLSWFKNAINNANI 121
Query: 116 EHYPSVKIRAVVARDSDVRAVPTNKPY----YLSQKGYPFDRYQNSLIFQGTPVLITHFN 171
+ + + +A++ +++ ++ +PT + + +G PFD + ++ G PVLI+HF+
Sbjct: 122 QEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIPFDYASDGILNTGAPVLISHFS 181
Query: 172 LDKTYAHIQSSFVYGWIKVSDLVYMHDKDIELLTHLKDYVMPIKDKIPLYTDYGDFYTNA 231
DK YA + +G+++ +L + + ++ +L +++ P+K+K +Y++ G F +
Sbjct: 182 KDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENL-NFITPLKEKFAIYSEDGKFLFES 240
Query: 232 RVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNSEN 291
R+G ++ P KE K Y + G + + +KD FP FN +N
Sbjct: 241 RIGAIY------------PYYKEDKNYFY-----GKIGSKKYKISKKDVSKFPLQFNDKN 283
Query: 292 MAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMK 351
+ + +L YGWGG RDCS TRD F+ FG+ LPRNS AQ N++ D+S++
Sbjct: 284 LKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFNHF-DISTLS 342
Query: 352 AKEKEDYILKNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSHKIGG 411
+K+D++ + + +L+YL GHIMLY G I H+IW ++ + L I
Sbjct: 343 NSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDATQRLL---ISS 399
Query: 412 VVITSLWLAEEHNGAFSKKKLLIDRVLGMSDLKD--FVN 448
VITSL K ++L D +L +S LK+ F+N
Sbjct: 400 SVITSL--------EIGKNEILEDNLL-LSRLKEISFIN 429
>ref|NP_460896.1| (NC_003197) putative cell wall-associated hydrolase [Salmonella
typhimurium LT2]
gb|AAL20855.1| (AE008786) putative cell wall-associated hydrolase [Salmonella
typhimurium LT2]
Length = 479
Score = 127 bits (319), Expect = 3e-28
Identities = 92/300 (30%), Positives = 137/300 (45%), Gaps = 19/300 (6%)
Query: 91 STGYGEDLKPNAKAFNDALIKSMD--IEHYPSVKIRAVVARDSDVRAVPTNKPYYLSQK- 147
S +GE+ + + + + + D I++ R ++ R+S VRA+PT+ P + +
Sbjct: 127 SAYWGENFRLYTSRWKEEVRGNTDTQIDNIYHASRRGIMVRESLVRALPTDDPLFNDPRQ 186
Query: 148 ---GYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQSSFVYGWIKVSDLVYMHDKDIE-- 202
GYPFD Q S + GTPV + D+ + ++ S V GW+ D+ K I
Sbjct: 187 AGEGYPFDNLQMSSLRPGTPVYTLTKSKDQRWQYVVSPAVTGWVHSEDIASTDQKFITQW 246
Query: 203 -LLTHLKDYVMPIKDKIPLYTDYGDFYTNARVGELFALIPQSQKTPQKPQKKELKAYGFL 261
LL H K I + ++ G +Y R G + Q + + +
Sbjct: 247 VLLAH-KQLGAFINAPVSVHVA-GVYYFTGRPGTILPFRHQ--------RAGQFLIAAPV 296
Query: 262 RDAKGYAALQSVILEEKDFFVFPKAFNSENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRD 321
R + G A + V L +F P EN+A + M G YGWG DCSA R
Sbjct: 297 RGSNGRAFIHWVWLSGNEFTAMPWKMTPENIAVLMKAMYGAPYGWGNFNFYNDCSAEIRS 356
Query: 322 SFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYILKNATPFGTLIYLKGHIMLYLG 381
FGI LPR+S AQ A VDLS + + DY+ + PF TL+Y+ GHIMLY+G
Sbjct: 357 LLMPFGIFLPRHSSAQVEAAGRVVDLSHKSPQMRIDYLTRYGKPFTTLVYIPGHIMLYIG 416
>ref|NP_456505.1| (NC_003198) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD05691.1| (AL627272) putative exported protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 477
Score = 124 bits (311), Expect = 2e-27
Identities = 96/332 (28%), Positives = 148/332 (43%), Gaps = 26/332 (7%)
Query: 66 YSPWLDMKVKSNKKEVFWILKEMN-------KSTGYGEDLKPNAKAFNDALIKSMD--IE 116
+SPW D + + K+ ++ + S +GE+ + + + + + D I+
Sbjct: 93 HSPWNDFYITALLKKNAAQARDASIKQFLSDGSAYWGENFRLYTSRWKEEVRGNTDTQID 152
Query: 117 HYPSVKIRAVVARDSDVRAVPTNKPYYLSQK----GYPFDRYQNSLIFQGTPVLITHFNL 172
+ R ++ R+S VRA+PT+ P + + GYPFD Q S + GTPV +
Sbjct: 153 NIYHASRRGIMVRESLVRALPTDDPLFNDPRQAGEGYPFDNLQMSSLRPGTPVYTLTKSK 212
Query: 173 DKTYAHIQSSFVYGWIKVSDLVYMHDKDIE---LLTHLKDYVMPIKDKIPLYTDYGDFYT 229
D+ + ++ S V GW+ D+ K I LL H K I + ++ G +Y
Sbjct: 213 DQRWQYVVSPAVTGWVHSEDIASTDQKFITQWVLLAH-KQLGAFINAPVSVHAA-GVYYF 270
Query: 230 NARVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFFVFPKAFNS 289
R G + Q + + +R + G A + V L +F P
Sbjct: 271 TGRPGTILPFRHQ--------RAGQFLIAAPVRGSNGRAFIHWVWLSGNEFTAMPWKMTP 322
Query: 290 ENMAYFIDTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSS 349
EN+A + M G YGWG DCSA R FGI LPR+S AQ A VDLS
Sbjct: 323 ENIAVLMKAMHGAPYGWGNFNFYNDCSAEVRSLLMPFGIFLPRHSSAQVESAGRVVDLSH 382
Query: 350 MKAKEKEDYILKNATPFGTLIYLKGHIMLYLG 381
+ + DY+ + F TL+Y+ GHIMLY+G
Sbjct: 383 KNPQMRIDYLTRYGKAFTTLVYIPGHIMLYIG 414
>ref|NP_639151.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM43052.1| (AE012501) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 448
Score = 80.5 bits (197), Expect = 4e-14
Identities = 83/355 (23%), Positives = 137/355 (38%), Gaps = 28/355 (7%)
Query: 83 WI--LKEMNKSTGYGEDLKPNAKAFNDALIKSMDIEHYPS--VKIRAVVARDSDVRAVPT 138
WI L + T Y D + A DAL +S+ + P+ A+V + + +R PT
Sbjct: 75 WIQTLSSTPRRTLYSTDGQTLTAAQLDALRQSLALGALPARITPAYALVVQRAALRTFPT 134
Query: 139 NKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQSSFVYGWIKVSDLVYMHD 198
+ + + DR+Q S ++ GTPV + H + D + + + W+ L
Sbjct: 135 TQRVFTTPDDRDIDRFQESALYPGTPVAVLHTSADGVWRFVLAENYAAWVANDQLA---- 190
Query: 199 KDIELLTHLKDYVMPIKDKIPLYTDYGDFYT---------NARVGELFALIPQSQKTPQK 249
+ + DY + YT +G L+P+ PQ
Sbjct: 191 --VGPRAQVLDYAQRGPRLVVTGARVQSAYTPELPSVSALTLDMGTNLPLLPRWP--PQT 246
Query: 250 PQKKELKAYGFL-----RDAKGYAALQSVILEE-KDFFVFPKAFNSENMAYFIDTMLGQK 303
P +L ++ RDA+G L ++ D + + + LG++
Sbjct: 247 PVNGQLPLAAYVVELPQRDARGALQLVPALVPRGADVHIGALPLSEAALLRQAFKFLGER 306
Query: 304 YGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKEDYILKNA 363
YGWG RDCS F D + + GI LPRN+ Q+R + +A +
Sbjct: 307 YGWGNDYAARDCSGFVLDVYRSLGIALPRNTGDQARSPVLHSVPFDQRAPLPQRQQQLAR 366
Query: 364 TPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSH-KIGGVVITSL 417
G LIY+ GH+ML +G V H + + L ++ GV +T L
Sbjct: 367 LQVGDLIYIPGHVMLVIGHVQGAPWVIHDVAGAGYRDAAGALQRARLNGVSVTPL 421
>ref|NP_644167.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM38703.1| (AE012035) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 454
Score = 71.2 bits (173), Expect = 2e-11
Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 13/302 (4%)
Query: 126 VVARDSDVRAVPTNKPYYLSQKGYPFDRYQNSLIFQGTPVLITHFNLDKTYAHIQSSFVY 185
VVAR + +R PT + + S DR+Q S ++ GTPV I H + D + + ++
Sbjct: 129 VVARGA-LRTFPTAQRVFTSTDDRDIDRFQESALYPGTPVAILHSSADGAWKFVVAANYA 187
Query: 186 GWIKVSDLVYMHDKDIELLTHLKD---YVMPIKDKIPLYTDYGDFYTNARVGELFALIPQ 242
WI + L E+L + + ++ YT + + +L
Sbjct: 188 AWIASTQLA--EGSRTEVLNYAQRGPRLIVTAARAQTAYTPESPAISALTLDMGTSLPLL 245
Query: 243 SQKTPQKPQKKELKAYGF-----LRDAKGYAALQSVILEE-KDFFVFPKAFNSENMAYFI 296
+PQ+P +L + LR A G L ++ D + +
Sbjct: 246 GDWSPQQPVNGQLPLAAYVVQLPLRSADGRLQLVPALMPRGADVRIGALPATDAALLRQA 305
Query: 297 DTMLGQKYGWGGLLGNRDCSAFTRDSFANFGILLPRNSYAQSRYANNYVDLSSMKAKEKE 356
LG++YGWG RDCS F D + + G+ LPRN+ Q+R + A +
Sbjct: 306 FKFLGERYGWGNDYDARDCSGFVLDVYRSLGLALPRNTGDQARSTVLHSVAFDAGAPLAQ 365
Query: 357 DYILKNATPFGTLIYLKGHIMLYLGAHNHQAIVAHSIWSVQTQKHFKTLSH-KIGGVVIT 415
G L+Y+ H+ML +G + V H + + ++ ++ GV +T
Sbjct: 366 RLQQLAQLQVGDLVYIPAHVMLVIGHADGAPWVIHDVAGASYRAADGSVQRARLNGVSVT 425
Query: 416 SL 417
L
Sbjct: 426 PL 427
>ref|NP_441569.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S75688 hypothetical protein slr1474 - Synechocystis sp. (strain PCC 6803)
dbj|BAA18249.1| (D90912) ORF_ID:slr1474~unknown protein [Synechocystis sp. PCC
6803]
Length = 269
Score = 49.3 bits (116), Expect = 9e-05
Identities = 43/174 (24%), Positives = 79/174 (44%), Gaps = 16/174 (9%)
Query: 222 TDYGDFYTNARVGELFALIPQSQKTPQKPQKKELKAYGFLRDAKGYAALQSVILEEKDFF 281
+D+ + T A+ G L + +++ ++ E + G+L + +V +
Sbjct: 31 SDHQELATQAKQGRYLRLTEKIERSAVLVEQAEDRYQGWLAEDDLQNLTPAVHAYQP--V 88
Query: 282 VFPKAFNSENMAYFIDTMLGQK-----YGWGGLLG-NRDCSAFTRDSFANFGILLPRNSY 335
+A + ++ ID +L K Y WGG +G N DCS + +FA+ GI LPR+SY
Sbjct: 89 TVTRAEIEQRISQVIDYLLEAKQRENYYLWGGNIGPNYDCSGLMQAAFASQGIWLPRDSY 148
Query: 336 AQSRYANNYVDLSSMKAKEKEDYILKNATPF----GTLIYLKG----HIMLYLG 381
Q+ + VD+ + + + ++ A G LI+ H+ +YLG
Sbjct: 149 QQAAFCQQVVDVRPQRRSGELNQVMVEAIAKEFLPGDLIFFGNQRVDHVGMYLG 202
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,330,685
Number of Sequences: 1026957
Number of extensions: 13197062
Number of successful extensions: 28050
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28029
Number of HSP's gapped (non-prelim): 11
length of query: 457
length of database: 324,149,939
effective HSP length: 125
effective length of query: 332
effective length of database: 195,780,314
effective search space: 64999064248
effective search space used: 64999064248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)