BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645480|ref|NP_207655.1| hypothetical protein
[Helicobacter pylori 26695]
(246 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207655.1| (NC_000915) hypothetical protein [Helicoba... 489 e-138
ref|NP_223513.1| (NC_000921) putative [Helicobacter pylori ... 424 e-118
ref|NP_282631.1| (NC_002163) putative integral membrane pro... 101 8e-21
ref|NP_348181.1| (NC_003030) Heavy-metal-associated domain ... 89 6e-17
ref|NP_273801.1| (NC_003112) conserved hypothetical protein... 87 1e-16
ref|NP_283749.1| (NC_003116) hypothetical protein NMA0970 [... 87 2e-16
ref|NP_488751.1| (NC_003272) unknown protein [Nostoc sp. PC... 75 8e-13
ref|NP_231078.1| (NC_002505) conserved hypothetical protein... 73 2e-12
ref|NP_250238.1| (NC_002516) hypothetical protein [Pseudomo... 71 1e-11
ref|NP_519405.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN... 66 4e-10
ref|NP_563453.1| (NC_003366) probable c-type cytochrome bio... 51 1e-05
ref|NP_439046.1| (NC_000907) thiol:disulfide interchange pr... 49 6e-05
ref|NP_274527.1| (NC_003112) thiol:disulfide interchange pr... 48 8e-05
ref|NP_284434.1| (NC_003116) putative disulphide isomerase ... 47 1e-04
sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein ds... 47 1e-04
ref|NP_245158.1| (NC_002663) DsbD [Pasteurella multocida] >... 46 3e-04
sp|Q9CP40|DSBD_PASMU Thiol:disulfide interchange protein ds... 46 3e-04
ref|NP_232328.1| (NC_002505) thiol:disulfide interchange pr... 45 0.001
ref|NP_111234.1| (NC_002689) Predicted threonine efflux pro... 44 0.002
ref|NP_634469.1| (NC_003901) conserved protein [Methanosarc... 42 0.008
ref|NP_222971.1| (NC_000921) putative CYTOCHROME C-TYPE BIO... 42 0.008
sp|Q9KJZ3|DSBD_PSESP Thiol:disulfide interchange protein ds... 42 0.008
>ref|NP_207655.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64627 hypothetical protein HP0861 - Helicobacter pylori (strain 26695)
gb|AAD07915.1| (AE000596) H. pylori predicted coding region HP0861 [Helicobacter
pylori 26695]
Length = 246
Score = 489 bits (1260), Expect = e-138
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR 60
MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR
Sbjct: 1 MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR 60
Query: 61 ISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLM 120
ISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLM
Sbjct: 61 ISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLM 120
Query: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL
Sbjct: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKG 240
MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKG
Sbjct: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKG 240
Query: 241 VHSHEH 246
VHSHEH
Sbjct: 241 VHSHEH 246
>ref|NP_223513.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71887 hypothetical protein jhp0795 - Helicobacter pylori (strain J99)
gb|AAD06371.1| (AE001509) putative [Helicobacter pylori J99]
Length = 245
Score = 424 bits (1089), Expect = e-118
Identities = 213/244 (87%), Positives = 224/244 (91%)
Query: 1 MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR 60
MQMM NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQ+ CHALYNVGR
Sbjct: 1 MQMMQNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQIACHALYNVGR 60
Query: 61 ISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIPFISFLM 120
ISTYMLLGAI A LG+SLSVSMGFRGVL +SMGI+LI LALLGA+ EKLSFQIPFISFLM
Sbjct: 61 ISTYMLLGAITAGLGNSLSVSMGFRGVLLMSMGIVLILLALLGAKAEKLSFQIPFISFLM 120
Query: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
KKTLQSQN+LGLYFLGVLNGFLPCMMVYSFLASVILSHS FMGAMLGLSFGLGTS+PLFL
Sbjct: 121 KKTLQSQNVLGLYFLGVLNGFLPCMMVYSFLASVILSHSTFMGAMLGLSFGLGTSVPLFL 180
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKG 240
MGIFLSKIS+SYRKFFNLLSK LMGVFGLY+LYMGIMLI+H+ PHAM HQNN T
Sbjct: 181 MGIFLSKISISYRKFFNLLSKGLMGVFGLYVLYMGIMLISHQTPHAMRHQNNATPQQEGH 240
Query: 241 VHSH 244
H H
Sbjct: 241 FHDH 244
>ref|NP_282631.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||B81296 probable integral membrane protein Cj1493c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73915.1| (AL139078) putative integral membrane protein [Campylobacter
jejuni]
Length = 219
Score = 101 bits (251), Expect = 8e-21
Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 19/221 (8%)
Query: 6 NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYM 65
++ FL + A S GHC MCGG F I + ++ + LT +YN+ RI Y+
Sbjct: 2 SIDFLAIISVAFLSSFGHCYSMCGGFNLLF--INLNSKSNNLFLLTF--IYNLFRIFAYI 57
Query: 66 LLGAIAASLGHSLSVSMGFRGVLFISMGIILICLAL-LGARMEKLSF---QIPFISFLMK 121
+LG I + G+ L+++ + + F +GI ++ L L R LSF + F SF+ K
Sbjct: 58 VLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNMLSFIENNVFFDSFVKK 117
Query: 122 KTLQSQNILGL---YFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPL 178
+S+N GL FLG NGF+PC +VY F+A+ + + F G ++ + FG+ T +P
Sbjct: 118 IIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIFEGILVMMIFGIST-LPA 176
Query: 179 FLMGIFLSKISVSYRKF----FNLLSKILMGVFGLYILYMG 215
L F SKIS + F FN LS ++ +G+ + Y+G
Sbjct: 177 ML---FFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIG 214
>ref|NP_348181.1| (NC_003030) Heavy-metal-associated domain (N-terminus) and
membrane-bounded cytochrome biogenesis cycZ-like domain,
possible membrane copper tolerance protein [Clostridium
acetobutylicum]
gb|AAK79521.1|AE007665_8 (AE007665) Heavy-metal-associated domain (N-terminus) and
membrane-bounded cytochrome biogenesis cycZ-like domain,
possible membrane copper tolerance protein [Clostridium
acetobutylicum]
Length = 601
Score = 88.6 bits (218), Expect = 6e-17
Identities = 65/235 (27%), Positives = 114/235 (47%), Gaps = 12/235 (5%)
Query: 12 MFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYMLLGAIA 71
+F+ + S+ HCVGMCGGI+ + S +K + S + LYN GR+ +Y +LG I
Sbjct: 111 IFIVGVLTSI-HCVGMCGGILLSQS---ITKEGNKSSSIKSAILYNSGRVLSYTILGGIV 166
Query: 72 ASLGHSLSVSMGFRGVL--FISMGIILICLALLGARM-EKLSFQIPFISFLMKKTLQSQN 128
+LG ++S+G + L F + +I++ L + G + K+ ++PF + KK ++
Sbjct: 167 GALGSVFNLSLGLKSFLQIFAAAFMIIMGLNMSGFSLFRKIQLKLPFPRRIFKKAPKTP- 225
Query: 129 ILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFLMGIFLSKI 188
+F+G+LNG +PC + + + + S GA+ F LGT + G+ I
Sbjct: 226 ----FFIGMLNGLMPCGPLQTMQLYALSTGSPIKGALSLFVFSLGTIPLMMTFGVLSGFI 281
Query: 189 SVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPHAMHHQNNTTQHDHKGVHS 243
S K S IL+ V G+ + G+ L +P +N+ K ++
Sbjct: 282 SKGSTKVLLKFSGILVMVLGIIMGGRGLALAGVNVPTVSSIKNSVLASPSKDTNN 336
>ref|NP_273801.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81161 conserved hypothetical protein NMB0759 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41172.1| (AE002430) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 242
Score = 87.4 bits (215), Expect = 1e-16
Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 17/224 (7%)
Query: 1 MQMMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGR 60
+ M H+++FL +FL HC+GMCGG+ SAF+ + F L L N GR
Sbjct: 19 LPMNHDITFLTLFLLGFFGGT-HCIGMCGGLSSAFALQLPPHINRFWLIL----LLNTGR 73
Query: 61 ISTYMLLGAIAASLGH---SLSVSMGFRGVLFISMGIILICLAL-------LGARMEKLS 110
+S+Y +G I +G SL + + +L+ + ++L+ L L L A++EK+
Sbjct: 74 VSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGISSLAAKIEKIG 133
Query: 111 FQI-PFISFLMKKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLS 169
I ++ ++ + L ++I +G+L G+LPC +VYS + S SA G + L+
Sbjct: 134 KPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALGSGSAATGGLYMLA 193
Query: 170 FGLGTSMPLFLMGIF-LSKISVSYRKFFNLLSKILMGVFGLYIL 212
F LGT L +GIF L + ++ L + + + ++ L+ L
Sbjct: 194 FALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKL 237
>ref|NP_283749.1| (NC_003116) hypothetical protein NMA0970 [Neisseria meningitidis
Z2491]
pir||A81944 hypothetical protein NMA0970 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84240.1| (AL162754) hypothetical protein NMA0970 [Neisseria meningitidis
Z2491]
Length = 222
Score = 87.0 bits (214), Expect = 2e-16
Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 3 MMHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRIS 62
M H+++FL +FL HC+GMCGG+ SAF+ + F L L N GR+S
Sbjct: 1 MNHDITFLTLFLLGFFGGT-HCIGMCGGLSSAFALQLPPHINRFWLIL----LLNTGRVS 55
Query: 63 TYMLLGAIAASLGH---SLSVSMGFRGVLFISMGIILICLAL-------LGARMEKLSFQ 112
+Y +G I +G SL + + +L+ + ++L+ L L L A++EK+
Sbjct: 56 SYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGISSLAAKIEKIGKP 115
Query: 113 I-PFISFLMKKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFG 171
I ++ ++ + L ++I +G+L G+LPC +VYS + S SA G + L+F
Sbjct: 116 IWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALGSGSAATGGLYMLAFA 175
Query: 172 LGTSMPLFLMGIF-LSKISVSYRKFFNLLSKILMGVFGLYIL 212
LGT L +GIF L + ++ L + + + ++ L+ L
Sbjct: 176 LGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKL 217
>ref|NP_488751.1| (NC_003272) unknown protein [Nostoc sp. PCC 7120]
dbj|BAB76410.1| (AP003597) ORF_ID:alr4711~unknown protein [Nostoc sp. PCC 7120]
Length = 423
Score = 74.7 bits (182), Expect = 8e-13
Identities = 72/250 (28%), Positives = 108/250 (42%), Gaps = 44/250 (17%)
Query: 7 LSFLGMFLAALSMSLGHCVGMCGGIVSAFS--------QIRFSKVTS-------FSYQLT 51
L FLG F GHC GMCG + AFS + K TS + QL
Sbjct: 10 LGFLGSF--------GHCFGMCGPLTVAFSLSHQHTTSEKDSQKQTSPTKTNPTWQQQLK 61
Query: 52 CHALYNVGRISTYMLLGAIAASLGHSL-------SVSMGFRGVLFISMGIILICLALLGA 104
H L N+GR+ +Y L+GA +G L V FR V+ I G++LI L G
Sbjct: 62 FHFLLNLGRMLSYALVGAGLRGVGSVLLQGGQLAGVGSDFRRVMAIITGVMLIWFGL-GQ 120
Query: 105 RMEKLSFQIPFISFLMKKTLQSQNILGLY------------FLGVLNGFLPCMMVYSFLA 152
L IP + L+K L ++ G+ LG+ G +PC +Y+
Sbjct: 121 LAPNLLPHIPLLHPLLKGNLHNRLSAGMVKLSLQPRWWTPTLLGMTWGLMPCGFLYAAQI 180
Query: 153 SVILSHSAFMGAMLGLSFGLGTSMPLFLMGIFLSKISVSYR-KFFNLLSKILMGVFGLYI 211
+ S +MG L+FGLGT + +G+ S +S R + F L I + + + +
Sbjct: 181 KAAETGSLWMGGATMLAFGLGTLPTMLGVGVSTSLVSQDRRSQLFRLGGWITLTIGTITL 240
Query: 212 LYMGIMLINH 221
L G ++++
Sbjct: 241 LRTGDTMVDY 250
>ref|NP_231078.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82199 conserved hypothetical protein VC1435 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94592.1| (AE004222) conserved hypothetical protein [Vibrio cholerae]
Length = 224
Score = 73.2 bits (178), Expect = 2e-12
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 9 FLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYMLLG 68
+LG ++ L + GHC+GMCGGI SA + SK + YN+GR+ +Y L+G
Sbjct: 5 YLGAWVVGL-LGAGHCLGMCGGI-SALLTLDPSKSSP-----ALLLYYNLGRLLSYALIG 57
Query: 69 AIAASLGHSLSVSMGFRGVLF---ISMGIILICLALLGAR-------MEKLSFQI-PFIS 117
I + SL+ + + L I +++I L L R +EK+ +I +IS
Sbjct: 58 GIVGGITASLTELIDVQSALVWLRIFAAVLMIVLGLYIGRWWFGLLWLEKVGQKIWRWIS 117
Query: 118 FLMKKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMP 177
L K L + G++ G+LPC +VYS L ++ S GA++ LSFG GT
Sbjct: 118 PLGKTLLPLKKQWHALPFGLVWGWLPCGLVYSMLTWSAVAGSFSQGALIMLSFGFGTLPA 177
Query: 178 LFLMGIFLSKI-SVSYRKFFNLLSKILMGVFGLYILYMGIMLI 219
+ G +K+ F + IL+ +GL+ Y + L+
Sbjct: 178 MLASGWGANKLMHWQNSHLFRQCAAILVIGYGLFTAYDAVKLM 220
>ref|NP_250238.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||D83451 hypothetical protein PA1547 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG04936.1|AE004583_1 (AE004583) hypothetical protein [Pseudomonas aeruginosa]
Length = 227
Score = 70.9 bits (172), Expect = 1e-11
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 12 MFLAALSMSL---GHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYMLLG 68
+ ++AL + L GHC+GMCGG++ A + ++ +L YN+GRI +Y G
Sbjct: 7 LLVSALILGLLGGGHCLGMCGGLMGALTLAIPAEQRGRRLRLLL--AYNLGRILSYACAG 64
Query: 69 AIAASLGHSLSVSMGFRGVLFISMGIILICLALLGA-------RMEKLSFQI-PFISFLM 120
+ G +++ + G L + G++LI + L A R+E L + +
Sbjct: 65 LLLGLAGWAVARTP-LAGALRVVAGLLLIAMGLYLAGWWSGLTRVEALGRGLWRHLEPFA 123
Query: 121 KKTLQSQNILGLYFLGVLNGFLPCMMVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
++ L ++ LG + G+LPC +VYS L SA A+L L+FGLGT L
Sbjct: 124 RRLLPVSSLPRALLLGAIWGWLPCGLVYSTLLWATSQGSALDSALLMLAFGLGTWPVLLA 183
Query: 181 MGIFLSKI-SVSYRKFFNLLSKILMGVFGLYIL 212
G+ ++ ++ R+ ++ +++ +FGL+ L
Sbjct: 184 TGMAAERVTALLRRRGVRIVGGLMVILFGLWTL 216
>ref|NP_519405.1| (NC_003295) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD14986.1| (AL646063) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 248
Score = 65.9 bits (159), Expect = 4e-10
Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 4 MHNLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIR-----FSKVTSFSYQLTCHALYNV 58
M + L +FL AL + HC+ MC GI A + + S+ + QL H +
Sbjct: 1 MSAAALLSVFLIALLGGV-HCLAMCSGIALAAERAQPAVRIVSRRRLWFEQLVMH----L 55
Query: 59 GRISTYMLLGAIAASLGHS------LSVSMGF---RGVLFISMGIILICLALL----GAR 105
GR++TY LLGA +LG + L + G L ++ G++L+ GA
Sbjct: 56 GRLTTYALLGAAMGALGATVWRQQWLPIQRGLFALASALLLAYGLLLLSRTAADVWRGAW 115
Query: 106 MEKLSFQIP-----FISFLMKKTLQSQ-NILGLYFLGVLNGFLPCMMVYSFLASVILSHS 159
+E++ ++ S + +L+++ + G Y G+ G +PC MVY LA +L+ +
Sbjct: 116 LERILGRLSGGLAAVASGVRASSLRARFPLAGRYLTGLAWGLVPCGMVYGALAVALLAGN 175
Query: 160 AFMGAMLGLSFGLGTSMPLFLM-GIFLSKISVSYRKFFNLLSKILMGVFGLY 210
A GA++ L+FG GT L +M G+ VS ++ ++ I + FG++
Sbjct: 176 AASGAVVMLAFGAGTLPNLLMMSGVAGWLRGVSRMRWARGVAGIGIAAFGIW 227
>ref|NP_563453.1| (NC_003366) probable c-type cytochrome biogenesis protein
[Clostridium perfringens]
dbj|BAB82243.1| (AP003194) probable c-type cytochrome biogenesis protein
[Clostridium perfringens]
Length = 230
Score = 50.8 bits (120), Expect = 1e-05
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 30/225 (13%)
Query: 7 LSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYML 66
LSF +A+ S + + G V S+++ +K +F Y L ++++G T+ +
Sbjct: 21 LSFFAGVVASFSTCTLSSIPLLIGYVQG-SEVKDNK-KAFKYSL----IFSIGLGITFTV 74
Query: 67 LGAIAASLGHSLSVSMGFRGVL--FISMGIILICLALLGARMEKLSFQIPFISFLMKKTL 124
+G + A +G + + F ++ FI +G L L ++ +K K T
Sbjct: 75 IGLLTALIGKAFLGAGKFWYIILAFIMIGSGLQVLDVINLFGDKKD--------ACKITK 126
Query: 125 QSQNILGLYFLGVLNGFL--PCM--MVYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
+ + IL +FLG+L+G L PC ++ + +A + S + +G ++ L + LG S+ + L
Sbjct: 127 KREGILDAFFLGILSGILASPCATPIMAAIIAFIAASGNLVIGMIMLLMYSLGHSVLIIL 186
Query: 181 MGI---FLSKISVSY------RKFFNLLSKILMGVFGLYILYMGI 216
G + KI+ S R N+L I++ + GLY+ Y+G+
Sbjct: 187 AGTSFGLVEKIAYSENGKKIGRVLKNILGTIII-LVGLYLFYLGV 230
>ref|NP_439046.1| (NC_000907) thiol:disulfide interchange protein (dsbD) [Haemophilus
influenzae Rd]
sp|P44919|DSBD_HAEIN Thiol:disulfide interchange protein dsbD precursor (C-type
cytochrome biogenesis protein cycZ)
pir||A64100 inner membrane copper tolerance protein cycZ homolog - Haemophilus
influenzae (strain Rd KW20)
gb|AAC22543.1| (U32770) thiol:disulfide interchange protein (dsbD) [Haemophilus
influenzae Rd]
Length = 579
Score = 48.5 bits (114), Expect = 6e-05
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 20/227 (8%)
Query: 8 SFLGMFLAALSMSLGHCVGMCGGIVSAF---SQIRFSKVTSFSYQLTCHALYNVGRISTY 64
+ G F+ L ++ CV ++SA Q R + + +FS LY G TY
Sbjct: 177 AIFGFFVLGLGLAFTPCVLPMLPLLSAIVIGQQQRPNMMRAFSLAF----LYVQGMALTY 232
Query: 65 MLLGAIAASLGHSLSVSMGFRGVLF-ISMGIILICLALLGARMEKL--SFQIPFISFLMK 121
LLG A++G +++ V+ +S+ + + L++ G +L S Q ++ K
Sbjct: 233 TLLGLAVAAIGLPFQIALQHPYVMIGLSILFVALALSMFGLFTIQLPNSLQNKLNTWSQK 292
Query: 122 KTLQSQNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMP 177
+T S G + +G++ G + PC + L V S F GA+ LG +P
Sbjct: 293 QT--SGAFGGAFAMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAVTLYLLALGMGVP 350
Query: 178 LFLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMP 224
L L+ +F +KI ++ N + + FG +L + + L++ +P
Sbjct: 351 LMLITLFGNKILPKSGEWMNTVKQ----TFGFVMLALPVFLLSRILP 393
>ref|NP_274527.1| (NC_003112) thiol:disulfide interchange protein DsbD [Neisseria
meningitidis MC58]
sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein dsbD precursor
pir||F81074 thiol-disulfide interchange protein dsbD homolog NMB1519 [imported]
- Neisseria meningitidis (group B strain MD58)
gb|AAF41875.1| (AE002501) thiol:disulfide interchange protein DsbD [Neisseria
meningitidis MC58]
Length = 601
Score = 48.1 bits (113), Expect = 8e-05
Identities = 49/225 (21%), Positives = 93/225 (40%), Gaps = 11/225 (4%)
Query: 6 NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYM 65
N + L FLA L +S C+ IVS+ + K + +Y G TY
Sbjct: 189 NANLLAFFLAGLGLSFTACMYPLLPIVSSI--VVGDKKAGKARAFVLSVVYVQGLALTYT 246
Query: 66 LLGAIAASLGHSLSVSMGFRGVLFISMGI-ILICLALLGARMEKLSFQIPFISFLMKKTL 124
L+G +A G L+V + V+ + + +++ L++ G +L + L
Sbjct: 247 LVGIVAGLTGALLTVWLQQAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRL 306
Query: 125 QSQNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
I+ ++ +G+L+ + PC+ + L + + A +G + + LGT +PL
Sbjct: 307 SGGKIVSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIA 366
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPH 225
+G F I + N + FG +L + + L +P+
Sbjct: 367 IGTFGGHILPKAGDWMNAVKY----AFGFILLAVAVYLATPHLPY 407
>ref|NP_284434.1| (NC_003116) putative disulphide isomerase [Neisseria meningitidis
Z2491]
pir||B81868 thiol-disulfide interchange protein dsbD homolog NMA1719
[similarity] - Neisseria meningitidis (group A strain
Z2491)
emb|CAB84947.1| (AL162756) putative disulphide isomerase [Neisseria meningitidis
Z2491]
Length = 613
Score = 47.4 bits (111), Expect = 1e-04
Identities = 49/225 (21%), Positives = 93/225 (40%), Gaps = 11/225 (4%)
Query: 6 NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYM 65
N + L FLA L +S C+ IVS+ + K + +Y G TY
Sbjct: 201 NANLLAFFLAGLGLSFTACMYPLLPIVSSI--VVGDKKAGKARAFVLSVVYVQGLSLTYT 258
Query: 66 LLGAIAASLGHSLSVSMGFRGVLFISMGI-ILICLALLGARMEKLSFQIPFISFLMKKTL 124
L+G +A G L+V + V+ + + +++ L++ G +L + L
Sbjct: 259 LVGIVAGLTGALLTVWLQQAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRL 318
Query: 125 QSQNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
I+ ++ +G+L+ + PC+ + L + + A +G + + LGT +PL
Sbjct: 319 SGGKIVSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIA 378
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPH 225
+G F I + N + FG +L + + L +P+
Sbjct: 379 IGTFGGHILPRAGDWMNAVKY----AFGFILLAVAVYLATPHLPY 419
>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein dsbD precursor
Length = 601
Score = 47.4 bits (111), Expect = 1e-04
Identities = 49/225 (21%), Positives = 93/225 (40%), Gaps = 11/225 (4%)
Query: 6 NLSFLGMFLAALSMSLGHCVGMCGGIVSAFSQIRFSKVTSFSYQLTCHALYNVGRISTYM 65
N + L FLA L +S C+ IVS+ + K + +Y G TY
Sbjct: 189 NANLLAFFLAGLGLSFTACMYPLLPIVSSI--VVGDKKAGKARAFVLSVVYVQGLSLTYT 246
Query: 66 LLGAIAASLGHSLSVSMGFRGVLFISMGI-ILICLALLGARMEKLSFQIPFISFLMKKTL 124
L+G +A G L+V + V+ + + +++ L++ G +L + L
Sbjct: 247 LVGIVAGLTGALLTVWLQQAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRL 306
Query: 125 QSQNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFL 180
I+ ++ +G+L+ + PC+ + L + + A +G + + LGT +PL
Sbjct: 307 SGGKIVSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIA 366
Query: 181 MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMPH 225
+G F I + N + FG +L + + L +P+
Sbjct: 367 IGTFGGHILPRAGDWMNAVKY----AFGFILLAVAVYLATPHLPY 407
>ref|NP_245158.1| (NC_002663) DsbD [Pasteurella multocida]
gb|AAK02305.1| (AE006056) DsbD [Pasteurella multocida]
Length = 586
Score = 46.2 bits (108), Expect = 3e-04
Identities = 60/225 (26%), Positives = 98/225 (42%), Gaps = 26/225 (11%)
Query: 13 FLAALSMSLGHCVGMCGGIVSAF---SQIRFSKVTSFSYQLTCHALYNVGRISTYMLLGA 69
FL L ++ CV ++SA + R S +F + +Y G TY LLG
Sbjct: 192 FLFGLGLAFTPCVLPMLPLLSAIVIGREQRPSTAKAFGLSV----VYVQGMALTYTLLGL 247
Query: 70 IAASLGHSLSVSMGFRGVLF-ISMGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQN 128
I A++G V++ VL +S +L+ L++ G + Q+P +S K T SQ
Sbjct: 248 IVAAIGLPFQVALQSPYVLLTLSAIFVLLALSMFGL----FTLQLP-VSLQTKLTQYSQQ 302
Query: 129 -----ILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLF 179
G++ +G++ G + PC + L V S F GA+ LG +PL
Sbjct: 303 QKSGVFGGVFVMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAITLYLLALGMGLPLI 362
Query: 180 LMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMP 224
+ +F + I K N + ++ FG +L + I LI+ P
Sbjct: 363 FITVFGNNI---LPKSGNWMIQV-KNAFGFVLLALPIFLISRVFP 403
>sp|Q9CP40|DSBD_PASMU Thiol:disulfide interchange protein dsbD precursor
Length = 576
Score = 46.2 bits (108), Expect = 3e-04
Identities = 60/225 (26%), Positives = 98/225 (42%), Gaps = 26/225 (11%)
Query: 13 FLAALSMSLGHCVGMCGGIVSAF---SQIRFSKVTSFSYQLTCHALYNVGRISTYMLLGA 69
FL L ++ CV ++SA + R S +F + +Y G TY LLG
Sbjct: 182 FLFGLGLAFTPCVLPMLPLLSAIVIGREQRPSTAKAFGLSV----VYVQGMALTYTLLGL 237
Query: 70 IAASLGHSLSVSMGFRGVLF-ISMGIILICLALLGARMEKLSFQIPFISFLMKKTLQSQN 128
I A++G V++ VL +S +L+ L++ G + Q+P +S K T SQ
Sbjct: 238 IVAAIGLPFQVALQSPYVLLTLSAIFVLLALSMFGL----FTLQLP-VSLQTKLTQYSQQ 292
Query: 129 -----ILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLF 179
G++ +G++ G + PC + L V S F GA+ LG +PL
Sbjct: 293 QKSGVFGGVFVMGMIAGLVASPCTSAPLSGALLYVAQSGDLFTGAITLYLLALGMGLPLI 352
Query: 180 LMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMP 224
+ +F + I K N + ++ FG +L + I LI+ P
Sbjct: 353 FITVFGNNI---LPKSGNWMIQV-KNAFGFVLLALPIFLISRVFP 393
>ref|NP_232328.1| (NC_002505) thiol:disulfide interchange protein DsbD [Vibrio
cholerae]
sp|Q9KNN1|DSBD_VIBCH Thiol:disulfide interchange protein dsbD precursor
pir||A82043 inner membrane copper tolerance protein cycZ VC2701 [similarity] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF95841.1| (AE004336) thiol:disulfide interchange protein DsbD [Vibrio
cholerae]
Length = 600
Score = 44.7 bits (104), Expect = 0.001
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 50 LTCHALYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLF-ISMGIILICLALLGARMEK 108
L +Y G TY LLG + AS G ++ VL +S+ + + L++ G +
Sbjct: 238 LLLSVIYVQGMALTYTLLGLVVASAGLQFQAALQHPYVLMGLSVLFVALALSMFGLYSLQ 297
Query: 109 LSFQIPFISFLMKKTLQSQNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGA 164
L + + Q ++ G++ +G ++G + PC + L V S GA
Sbjct: 298 LPSGVQTWLNSLSNAQQGGSLPGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGA 357
Query: 165 MLGLSFGLGTSMPLFLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKMP 224
+ + +G +PL L+ +F +K+ K N + ++ +FG +L I L+ +P
Sbjct: 358 VALYALAIGMGIPLILVAVFGNKL---LPKAGNWMERV-KTLFGFVLLAAPIFLLERIVP 413
>ref|NP_111234.1| (NC_002689) Predicted threonine efflux protein [Thermoplasma
volcanium]
dbj|BAB59857.1| (AP000993) hypothetical protein [Thermoplasma volcanium]
Length = 186
Score = 43.9 bits (102), Expect = 0.002
Identities = 29/104 (27%), Positives = 59/104 (55%), Gaps = 9/104 (8%)
Query: 120 MKKTLQSQNILGLYFLGVLNGFL-PCMMVYSFLASV-ILSHSAFMGAMLGLSFGLGTSMP 177
+KK+ + + G YF+G+L G P +++ A + +++H + +G FGL + +
Sbjct: 87 LKKSSRYKTRRGNYFVGLLVGISNPFQIIWWVTAGLFVVNHMSLIGV-----FGLFSGVV 141
Query: 178 LFL--MGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLI 219
L++ F++K + Y K+ + S +++ FG+YIL +GI +I
Sbjct: 142 LWITIFPFFVNKYAKRYEKYVRIASSVVLISFGVYILIVGIKVI 185
>ref|NP_634469.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM32141.1| (AE013488) conserved protein [Methanosarcina mazei Goe1]
Length = 287
Score = 41.6 bits (96), Expect = 0.008
Identities = 44/165 (26%), Positives = 75/165 (44%), Gaps = 12/165 (7%)
Query: 55 LYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILICLALLGARMEKLSFQIP 114
++ +G + +Y+LLG S S+ F V I +ILI L LLG +
Sbjct: 127 VFGLGLVGSYLLLGLCLLSFRKSIPDLESFSFVTGII--VILIGLNLLGILKSPVVLDNY 184
Query: 115 FISFLMKKTLQSQNILGLYFLGVLNGFL--PCMM-VYSFLASVILSHSAFMGAMLGLSFG 171
F S K + + G++FLG+L F+ PC + L + +++ L L+F
Sbjct: 185 FQSSARK---YAGTLGGVFFLGILFSFVKVPCTAPMLLVLLNKTITNGTVNDLALLLAFS 241
Query: 172 LGTSMPLFLMGIF----LSKISVSYRKFFNLLSKILMGVFGLYIL 212
G P +G+ LSK SY+ + +S ++ + GL+I+
Sbjct: 242 GGVLTPFIGVGMIGGYTLSKQIRSYKMYLKKISGFVLILLGLWIM 286
>ref|NP_222971.1| (NC_000921) putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN
[Helicobacter pylori J99]
pir||D71956 probable holocytochrome-c synthase (EC 4.4.1.17) ccdA -
Helicobacter pylori (strain J99)
gb|AAD05826.1| (AE001462) putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN
[Helicobacter pylori J99]
Length = 239
Score = 41.6 bits (96), Expect = 0.008
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 55 LYNVGRISTYMLLGAIAASLGHSLSVSMGFRGVLFISMGIILIC-LALLGARMEKLSFQI 113
++ VG ++ +G A L HS S F V +I+ GI+++ L LG ++
Sbjct: 66 MFVVGFSLVFLGVGMSMAKLIHSFS----FSWVNYIAGGIVILFGLHFLGVFRFAFLYKT 121
Query: 114 PFISFLMKKTLQSQNILGLYFLGVLNGFLPCM-MVYSFLASVILSHSAFMGAMLGLSFGL 172
+ K + L + G+ PC+ +++ + + S A+ G ML + F +
Sbjct: 122 QSVGLASKSNSMQRFYPFLLGMSFALGWTPCIGPIFTSIVIMSASKDAY-GLMLMVVFVM 180
Query: 173 GTSMPLFLMGIFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLINHKM 223
G ++P L+ + L + ++ + K ++ + V GL ++ MGI+++ + +
Sbjct: 181 GLAIPFLLVALMLER-ALLFLKSLRKYNRAIEIVSGLVLILMGILIMTNSL 230
>sp|Q9KJZ3|DSBD_PSESP Thiol:disulfide interchange protein dsbD precursor
gb|AAF80267.1|AF155506_1 (AF155506) putative disulfide isomerase DsbD [Pseudomonas sp. JR1]
Length = 578
Score = 41.6 bits (96), Expect = 0.008
Identities = 52/217 (23%), Positives = 91/217 (40%), Gaps = 21/217 (9%)
Query: 10 LGMFLAALSMSLGHCVGMCGGIVSAFSQIR--FSKVTSFSYQLTCHALYNVGRISTYMLL 67
LG+ LA SL + G IV + + + F+ TS Y V Y +
Sbjct: 170 LGLLLAFTPCSLPMLPILAGLIVGSGATPKRGFALATS----------YVVSMALVYAAM 219
Query: 68 GAIAASLGHSLSVSMGFRGVLFISMGI-ILICLALLGARMEKLSFQIPFISFLMKKTLQS 126
G +AA LG +L + +L + +L+ L + G +L + + + +
Sbjct: 220 GVLAAMLGANLQALLQNPWLLGSFAAVFVLLALPMFGFFELQLPVAVRDRLENVSRNQRG 279
Query: 127 QNILGLYFLGVLNGFL--PCMM--VYSFLASVILSHSAFMGAMLGLSFGLGTSMPLFLMG 182
++ G LG L+G L PCM + L + S +A G ++ + G+G +PL L+
Sbjct: 280 GSLFGAGVLGALSGLLVGPCMTAPLAGALLYIAQSGNALHGGLILFAMGIGIGVPLLLLV 339
Query: 183 IFLSKISVSYRKFFNLLSKILMGVFGLYILYMGIMLI 219
++ + NLL GVFG L ++++
Sbjct: 340 TVGNRFLPKPGAWMNLLK----GVFGFLFLATALLML 372
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.333 0.143 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,948,397
Number of Sequences: 1026957
Number of extensions: 5186173
Number of successful extensions: 29490
Number of sequences better than 1.0e-02: 22
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 29451
Number of HSP's gapped (non-prelim): 23
length of query: 246
length of database: 324,149,939
effective HSP length: 118
effective length of query: 128
effective length of database: 202,969,013
effective search space: 25980033664
effective search space used: 25980033664
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 96 (41.6 bits)