BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645481|ref|NP_207656.1| hypothetical protein
[Helicobacter pylori 26695]
(223 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207656.1| (NC_000915) hypothetical protein [Helicoba... 448 e-125
ref|NP_223514.1| (NC_000921) putative [Helicobacter pylori ... 434 e-121
ref|NP_281584.1| (NC_002163) hypothetical protein Cj0394c [... 154 5e-37
ref|NP_228691.1| (NC_000853) conserved hypothetical protein... 59 4e-08
ref|NP_252969.1| (NC_002516) hypothetical protein [Pseudomo... 57 2e-07
ref|NP_603658.1| (NC_003454) Bvg accessory factor [Fusobact... 50 2e-05
ref|NP_487936.1| (NC_003272) hypothetical protein [Nostoc s... 49 4e-05
ref|NP_441440.1| (NC_000911) unknown protein [Synechocystis... 49 5e-05
ref|NP_214321.1| (NC_000918) putative protein [Aquifex aeol... 48 9e-05
ref|NP_299083.1| (NC_002488) conserved hypothetical protein... 43 0.003
dbj|BAA21476.1| (AB005550) simillar to Bacillus subtilis, h... 42 0.007
>ref|NP_207656.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64627 hypothetical protein HP0862 - Helicobacter pylori (strain 26695)
gb|AAD07916.1| (AE000596) H. pylori predicted coding region HP0862 [Helicobacter
pylori 26695]
Length = 223
Score = 448 bits (1153), Expect = e-125
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA 60
MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA
Sbjct: 1 MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA 60
Query: 61 LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG 120
LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG
Sbjct: 61 LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG 120
Query: 121 CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ 180
CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ
Sbjct: 121 CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ 180
Query: 181 KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK 223
KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Sbjct: 181 KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK 223
>ref|NP_223514.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71887 hypothetical protein jhp0796 - Helicobacter pylori (strain J99)
gb|AAD06372.1| (AE001509) putative [Helicobacter pylori J99]
Length = 223
Score = 434 bits (1115), Expect = e-121
Identities = 210/223 (94%), Positives = 221/223 (98%)
Query: 1 MPARQSFTDLKNLVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA 60
MPARQSF DLK+L+LCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA
Sbjct: 1 MPARQSFKDLKDLILCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKA 60
Query: 61 LLNCYPNAKNIAGFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGG 120
LLNCYPNAKNIAGFFHLETDY+GLGIDRQMACLAV NGV+VDAGSAITIDL+KEGKHLGG
Sbjct: 61 LLNCYPNAKNIAGFFHLETDYIGLGIDRQMACLAVVNGVIVDAGSAITIDLVKEGKHLGG 120
Query: 121 CILPGLAQYIHAYKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQ 180
CILPGLAQY+HAYKKSAKILEQPFKALDSLEVLPK+TRDAVNYGM+LS+I+CIQHLAK+Q
Sbjct: 121 CILPGLAQYVHAYKKSAKILEQPFKALDSLEVLPKNTRDAVNYGMILSIISCIQHLAKDQ 180
Query: 181 KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK 223
KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK
Sbjct: 181 KIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIALKKAGILECK 223
>ref|NP_281584.1| (NC_002163) hypothetical protein Cj0394c [Campylobacter jejuni]
pir||H81382 hypothetical protein Cj0394c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB74230.1| (AL139075) hypothetical protein Cj0394c [Campylobacter jejuni]
Length = 209
Score = 154 bits (390), Expect = 5e-37
Identities = 80/204 (39%), Positives = 124/204 (60%), Gaps = 1/204 (0%)
Query: 13 LVLCDIGNTRIHFAQNYQLFSSAKEDLKRLGIQKEIFYISVNEENEKALLNCYPNAKNIA 72
++LCDIGN+ +F + + F+ + +++IFYI+VNE ++ L N N N+
Sbjct: 1 MLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYINVNEHLKEHLKN-QKNFINLE 59
Query: 73 GFFHLETDYVGLGIDRQMACLAVNNGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHA 132
+F +T Y GLGIDR AC + +GVVVDAGSAITID+I HLGG ILPG+A Y
Sbjct: 60 PYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNSIHLGGFILPGIANYKKI 119
Query: 133 YKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAKNQKIYLCGGDAKYL 192
Y + L+ F SL+ P+ T DA++YG+ + I+ A+N+K+Y GGD ++L
Sbjct: 120 YSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLIKDAAQNKKLYFTGGDGQFL 179
Query: 193 SAFLPHSVCKERLVFDGMEIALKK 216
+ + H++ + L+F GM+ +K+
Sbjct: 180 ANYFDHAIYDKLLIFRGMKKIIKE 203
>ref|NP_228691.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||D72320 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35964.1|AE001754_1 (AE001754) conserved hypothetical protein [Thermotoga maritima]
Length = 246
Score = 58.9 bits (141), Expect = 4e-08
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 97 NGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHA-YKKSAKILEQPFKALDSLEVLPK 155
NG+++D G+A T+DL+ G + GG ILPG +H+ ++ +AK+ K D V+ K
Sbjct: 120 NGIIIDMGTATTVDLVVNGSYEGGAILPGFFMMVHSLFRGTAKLPLVEVKPADF--VVGK 177
Query: 156 STRDAVNYGMV-------LSVIACIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFD 208
T + + G+V +I I+ + + + L GG +K + + H + E L
Sbjct: 178 DTEENIRLGVVNGSVYALEGIIGRIKEVYGDLPVVLTGGQSKIVKDMIKHEIFDEDLTIK 237
Query: 209 GM 210
G+
Sbjct: 238 GV 239
>ref|NP_252969.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||H83111 hypothetical protein PA4279 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07667.1|AE004843_9 (AE004843) hypothetical protein [Pseudomonas aeruginosa]
Length = 248
Score = 57.0 bits (136), Expect = 2e-07
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 21/166 (12%)
Query: 67 NAKNIAGFFHLETDYVGLGIDRQMACLAVNN-----GVVVDAGSAITIDLI-KEGKHLGG 120
+ K +AG + DY LG+DR +A +A ++ +V+D G+A+T DL+ +G HLGG
Sbjct: 81 SGKQLAGVRNGYLDYQRLGLDRWLALVAAHHLAKKACLVIDLGTAVTSDLVAADGVHLGG 140
Query: 121 CILPGLAQYIHAYKKSAKILE----QPFKALDSLEVLPKSTRDAVNYGMVLSV------- 169
I PG+ + + + + +AL SL+ ++T +AV G +L +
Sbjct: 141 YICPGMTLMRSQLRTHTRRIRYDDAEARRALASLQP-GQATAEAVERGCLLMLRGFVREQ 199
Query: 170 --IACIQHLAKNQKIYLCGGDAKYLSAFLPHSVCKERLVFDGMEIA 213
+AC + L + +I+L GGDA+ + L + LVF G+ +A
Sbjct: 200 YAMAC-ELLGPDCEIFLTGGDAELVRDELAGARIMPDLVFVGLALA 244
>ref|NP_603658.1| (NC_003454) Bvg accessory factor [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94957.1| (AE010586) Bvg accessory factor [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 256
Score = 50.1 bits (118), Expect = 2e-05
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 80 DYVGLGIDR------QMACLAVNNGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHA- 132
+Y G G DR M N V+ D G+A T D++K+G ++GG ILPG+ I+A
Sbjct: 104 NYTGFGADRIIDITEAMQKYPDKNLVIFDFGTATTYDVLKKGVYIGGGILPGIDMSINAL 163
Query: 133 YKKSAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACIQHLAK------NQKIYL-- 184
Y +AK+ F S VL T + + I+H+ K N++I++
Sbjct: 164 YGNTAKLPRVKFTTPSS--VLGTDTMKQIQAAIFFGYAGQIKHIIKKINEELNEEIFVLA 221
Query: 185 CGGDAKYLSA 194
GG K LSA
Sbjct: 222 TGGLGKILSA 231
>ref|NP_487936.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75595.1| (AP003594) ORF_ID:alr3896~hypothetical protein [Nostoc sp. PCC
7120]
Length = 276
Score = 48.9 bits (115), Expect = 4e-05
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 23/158 (14%)
Query: 77 LETDYVGLGIDRQMACLAVNNG-----VVVDAGSAITIDLIKEGKHL-GGCILPGLA-QY 129
L Y LGIDR +A +V+DAG+A+T GK+L GG ILPG+ Q+
Sbjct: 112 LNNIYPTLGIDRALALWGAGMSWGFPVLVIDAGTALTFTAADGGKNLVGGAILPGVGLQF 171
Query: 130 IHAYKKSAKILEQPFKALDSLEV-LPKSTRDAVNYGMVLSVIACIQ-------HLAKNQK 181
+++ ++ + +A+ SL +T +A+ G++ ++IA ++ L + K
Sbjct: 172 ASLGQQTGQLPQVEMEAIKSLPPRFALNTTEAIQSGVIYTLIAGMRDFTEEWLSLFPDGK 231
Query: 182 IYLCGGD----AKYLSAFLP----HSVCKERLVFDGME 211
+ + GGD YL A P + + L+F GM+
Sbjct: 232 VAIKGGDRILLLNYLQALYPDLAARLIVEPNLIFWGMQ 269
>ref|NP_441440.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S75559 hypothetical protein slr0812 - Synechocystis sp. (strain PCC 6803)
dbj|BAA18120.1| (D90911) ORF_ID:slr0812~unknown protein [Synechocystis sp. PCC
6803]
Length = 257
Score = 48.5 bits (114), Expect = 5e-05
Identities = 50/153 (32%), Positives = 69/153 (44%), Gaps = 25/153 (16%)
Query: 81 YVGLGIDRQMACLAVNNG-----VVVDAGSAITIDLIKEGKHL-GGCILPGLAQYIHAYK 134
Y GIDR +A L +VVD G+A+TI + K L GG ILPGL +
Sbjct: 96 YPSFGIDRALAGLGTGLTYGFPCLVVDGGTALTITGFDQDKKLVGGAILPGLGLQLATL- 154
Query: 135 KSAKILEQPFKALDSLEVLPK----STRDAVNYGMVLSVIACIQ-HLAKNQKIY------ 183
++ P +D L LP T A+ G+V V+ +Q +L QK++
Sbjct: 155 -GDRLAALPKLEMDQLTELPDRWALDTPSAIFSGVVYGVLGALQSYLQDWQKLFPGAAMV 213
Query: 184 LCGGDAKYLSAFL-PHS-----VCKERLVFDGM 210
+ GGD K L FL HS + L+F GM
Sbjct: 214 ITGGDGKILHGFLKEHSPNLSVAWDDNLIFLGM 246
>ref|NP_214321.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||E70465 hypothetical protein aq_1924 - Aquifex aeolicus
gb|AAC07720.1| (AE000763) putative protein [Aquifex aeolicus]
Length = 229
Score = 47.8 bits (112), Expect = 9e-05
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 75 FHLETDYVG---LGIDRQMACLAVN-----NGVVVDAGSAITIDLIKEGKHLGGCILPGL 126
F ++ DY LG DR + N VV+ AG+A+ IDL+ EGK GG I GL
Sbjct: 72 FPIQVDYKTPETLGTDRVALAYSAKKFYGKNVVVISAGTALVIDLVLEGKFKGGFITLGL 131
Query: 127 AQYIHAYKKSAKILEQPFKALDSLEV-LPKSTRDAVNYG-------MVLSVIACIQHLAK 178
+ + A+ + + F + +E+ L +STR+ V G + S + + + K
Sbjct: 132 GKKLKILSDLAEGIPEFFP--EEVEIFLGRSTRECVLGGAYRESTEFIKSTLKLWRKVFK 189
Query: 179 NQ-KIYLCGGDAKYLSAF 195
+ K+ + GG+ KY S F
Sbjct: 190 RKFKVVITGGEGKYFSKF 207
>ref|NP_299083.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||A82637 conserved hypothetical protein XF1795 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84603.1|AE004001_8 (AE004001) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 242
Score = 42.7 bits (99), Expect = 0.003
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 85 GIDRQMACLAV---NNGVVVDAGSAITIDLIK-EGKHLGGCILPG---LAQYIHAYKKSA 137
G+DR +A L N +VV G+A+TIDL+ G HLGG I + Q +HA +
Sbjct: 98 GVDRFLALLGSYGEGNVLVVGVGTALTIDLLAANGCHLGGRISASPTLMRQALHARAE-- 155
Query: 138 KILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIACI--------QHLAKNQKIYLCGGDA 189
+ P + LE + T DA+ G + +A I Q L ++ ++ L GG
Sbjct: 156 ---QLPLSGGNYLE-FAEDTEDALVSGCNGAAVALIERSLYEAHQRLDQSVRLLLHGGGV 211
Query: 190 KYLSAFLPHSVCKERLVFDGMEI 212
L +L V + LV DG+ I
Sbjct: 212 ASLLPWLGDVVHRPTLVLDGLAI 234
>dbj|BAA21476.1| (AB005550) simillar to Bacillus subtilis, hypothetical 26.2 KD
protein in FTSH-CYSK intergenic region: Acc# P37564
[Desulfovibrio vulgaris]
Length = 212
Score = 41.6 bits (96), Expect = 0.007
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 84 LGIDRQMACLAVN-------NGVVVDAGSAITIDLIKEGKHLGGCILPGLAQYIHAY-KK 135
+G DR +A A + V VD G+A T D ++ G +LGG I PG+ A +
Sbjct: 109 VGADRLVAAYAARRLYPGPRSLVSVDFGTATTFDCVEGGAYLGGLICPGVLSSAGALSSR 168
Query: 136 SAKILEQPFKALDSLEVLPKSTRDAVNYGMVLSVIA 171
+AK+ + + V+ +ST ++N+G + A
Sbjct: 169 TAKLPRISLEVEEDSPVIGRSTTTSLNHGFIFGFAA 204
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,241,154
Number of Sequences: 1026957
Number of extensions: 5469029
Number of successful extensions: 12094
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12081
Number of HSP's gapped (non-prelim): 11
length of query: 223
length of database: 324,149,939
effective HSP length: 117
effective length of query: 106
effective length of database: 203,995,970
effective search space: 21623572820
effective search space used: 21623572820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)