BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645483|ref|NP_207658.1| hypothetical protein
[Helicobacter pylori 26695]
         (218 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207658.1|  (NC_000915) hypothetical protein [Helicoba...   424  e-118
ref|NP_223516.1|  (NC_000921) putative [Helicobacter pylori ...   424  e-118
ref|NP_281587.1|  (NC_002163) hypothetical protein Cj0397c [...    79  5e-14

>ref|NP_207658.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64627 hypothetical protein HP0864 - Helicobacter pylori (strain 26695)
 gb|AAD07918.1| (AE000596) H. pylori predicted coding region HP0864 [Helicobacter
           pylori 26695]
          Length = 218

 Score =  424 bits (1091), Expect = e-118
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE 60
           MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE
Sbjct: 1   MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE 60

Query: 61  QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE 120
           QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE
Sbjct: 61  QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE 120

Query: 121 VVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS 180
           VVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS
Sbjct: 121 VVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS 180

Query: 181 SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH 218
           SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH
Sbjct: 181 SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH 218



>ref|NP_223516.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71888 hypothetical protein jhp0798 - Helicobacter pylori (strain J99)
 gb|AAD06374.1| (AE001509) putative [Helicobacter pylori J99]
          Length = 218

 Score =  424 bits (1090), Expect = e-118
 Identities = 217/218 (99%), Positives = 218/218 (99%)

Query: 1   MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE 60
           MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE
Sbjct: 1   MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGDTKLQDYKHE 60

Query: 61  QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE 120
           QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE
Sbjct: 61  QTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQSSNE 120

Query: 121 VVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS 180
           +VKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS
Sbjct: 121 IVKAFAKYSYASLSRDKNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQSLSTIPLS 180

Query: 181 SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH 218
           SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH
Sbjct: 181 SSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETIQGTH 218



>ref|NP_281587.1| (NC_002163) hypothetical protein Cj0397c [Campylobacter jejuni]
 pir||C81383 hypothetical protein Cj0397c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB74233.1| (AL139075) hypothetical protein Cj0397c [Campylobacter jejuni]
          Length = 192

 Score = 78.6 bits (192), Expect = 5e-14
 Identities = 57/200 (28%), Positives = 104/200 (51%), Gaps = 20/200 (10%)

Query: 1   MSIKENLEQVRNEFKSDEKLLEGAFRLEKFFKRYKWVLLFIVVAFIAYLGD----TKLQD 56
           M +K+NL+ V+NE  ++E+ +E   + E+F ++YK+ +  +V+  +A+       +K+ D
Sbjct: 1   MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVIILVAWFAGNFIISKIND 60

Query: 57  YKHEQTRERITQIYNEVLESPNNIALQKRLKEVAPELYDLYQFARASERNDANEFKRLSQ 116
           YK ++  E    IY  +++ P+N  L ++LK     LY ++       + + N+F   + 
Sbjct: 61  YKTKEANE----IYANLIQDPSNKNLLEQLKNKNTNLYAIFLL-----KENINDFNN-TT 110

Query: 117 SSNEVVKAFAKYSYASLSRD---KNLLEKSPILKEMSALQEVNLLYEENSKDAIKKAHQS 173
             NE+ + +      +L ++    +L +KS  LK    L E   L E+N    I++A+  
Sbjct: 111 LQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK---IEEANVL 167

Query: 174 LSTIPLSSSLYAIISVLKHY 193
           LS I  +SSL  I   LKHY
Sbjct: 168 LSQIKENSSLNQIAKNLKHY 187



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,853,214
Number of Sequences: 1026957
Number of extensions: 4444449
Number of successful extensions: 14788
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14783
Number of HSP's gapped (non-prelim): 3
length of query: 218
length of database: 324,149,939
effective HSP length: 116
effective length of query: 102
effective length of database: 205,022,927
effective search space: 20912338554
effective search space used: 20912338554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 95 (41.2 bits)