BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645492|ref|NP_207667.1| hypothetical protein
[Helicobacter pylori 26695]
         (71 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207667.1|  (NC_000915) hypothetical protein [Helicoba...   149  7e-36
ref|NP_223525.1|  (NC_000921) putative [Helicobacter pylori ...   149  9e-36

>ref|NP_207667.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64629 hypothetical protein HP0873 - Helicobacter pylori (strain 26695)
 gb|AAD07929.1| (AE000597) H. pylori predicted coding region HP0873 [Helicobacter
          pylori 26695]
          Length = 71

 Score =  149 bits (376), Expect = 7e-36
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIF 60
          MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIF
Sbjct: 1  MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIF 60

Query: 61 FKLDKLIFSKK 71
          FKLDKLIFSKK
Sbjct: 61 FKLDKLIFSKK 71



>ref|NP_223525.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71885 hypothetical protein jhp0807 - Helicobacter pylori (strain J99)
 gb|AAD06389.1| (AE001510) putative [Helicobacter pylori J99]
          Length = 71

 Score =  149 bits (375), Expect = 9e-36
 Identities = 70/71 (98%), Positives = 71/71 (99%)

Query: 1  MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEIFYYFNFPLWLNLFLGQTIGAVIF 60
          MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFME+FYYFNFPLWLNLFLGQTIGAVIF
Sbjct: 1  MREFFKKLGTEYASKLFLVYWLRWMLSALVMLPFMEVFYYFNFPLWLNLFLGQTIGAVIF 60

Query: 61 FKLDKLIFSKK 71
          FKLDKLIFSKK
Sbjct: 61 FKLDKLIFSKK 71



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.338    0.150    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,459,331
Number of Sequences: 1026957
Number of extensions: 1395797
Number of successful extensions: 8268
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8266
Number of HSP's gapped (non-prelim): 2
length of query: 71
length of database: 324,149,939
effective HSP length: 47
effective length of query: 24
effective length of database: 275,882,960
effective search space: 6621191040
effective search space used: 6621191040
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 90 (39.3 bits)