BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15645493|ref|NP_207668.1| hypothetical protein [Helicobacter pylori 26695] (291 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207668.1|  (NC_000915) hypothetical protein [Helicoba...   576  e-163
emb|CAA94568.1|  (Z70679) putative [Helicobacter pylori]          568  e-161
gb|AAC15844.1|  (AF001494) putative 32.7 kDa protein [Helico...   563  e-159
ref|NP_223526.1|  (NC_000921) putative [Helicobacter pylori ...   543  e-153

>ref|NP_207668.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64629 hypothetical protein HP0874 - Helicobacter pylori (strain 26695)
 gb|AAD07926.1| (AE000597) H. pylori predicted coding region HP0874 [Helicobacter
           pylori 26695]
          Length = 291

 Score =  576 bits (1484), Expect = e-163
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS 60
           MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS
Sbjct: 1   MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS 60

Query: 61  VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF 120
           VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF
Sbjct: 61  VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF 120

Query: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP 180
           VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP
Sbjct: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP 180

Query: 181 WFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240
           WFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
Sbjct: 181 WFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240

Query: 241 EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291
           EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Sbjct: 241 EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291

>emb|CAA94568.1| (Z70679) putative [Helicobacter pylori]
          Length = 291

 Score =  568 bits (1464), Expect = e-161
 Identities = 286/291 (98%), Positives = 289/291 (99%)

Query: 1   MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS 60
           MKRRDFIKTT LGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS
Sbjct: 1   MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS 60

Query: 61  VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF 120
           VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKS QKKQVHLSYEIASYQLNERLFETSDF
Sbjct: 61  VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDF 120

Query: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP 180
           VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKH+MPKRQKALEGKENLPKRESLP
Sbjct: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHDMPKRQKALEGKENLPKRESLP 180

Query: 181 WFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240
           WFATIS+ESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
Sbjct: 181 WFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240

Query: 241 EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291
           EVFIPLNRHKDMQLD+ALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Sbjct: 241 EVFIPLNRHKDMQLDTALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291

>gb|AAC15844.1| (AF001494) putative 32.7 kDa protein [Helicobacter pylori]
          Length = 291

 Score =  563 bits (1450), Expect = e-159
 Identities = 283/291 (97%), Positives = 287/291 (98%)

Query: 1   MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAKYKIEAQYSIDFDSAEHTSLFIPMPS 60
           MKRRDFIKTT LGATGAVLGAQILQAEESKGS AKYKIEAQYSIDFDSAEHTSLFIPMPS
Sbjct: 1   MKRRDFIKTTALGATGAVLGAQILQAEESKGSAAKYKIEAQYSIDFDSAEHTSLFIPMPS 60

Query: 61  VVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSDF 120
           VVASNVHL+GNHAS+KSMLNFGVPYLQVDFLKS QKKQVHLSYEIASYQLNERLFETSDF
Sbjct: 61  VVASNVHLKGNHASHKSMLNFGVPYLQVDFLKSAQKKQVHLSYEIASYQLNERLFETSDF 120

Query: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESLP 180
           VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKR+SLP
Sbjct: 121 VAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRDSLP 180

Query: 181 WFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240
           WFATIS+ESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK
Sbjct: 181 WFATISQESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNHK 240

Query: 241 EVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291
           EVFIPLNRHKDMQLDS LLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Sbjct: 241 EVFIPLNRHKDMQLDSVLLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291

>ref|NP_223526.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71885 hypothetical protein jhp0808 - Helicobacter pylori (strain J99)
 gb|AAD06390.1| (AE001510) putative [Helicobacter pylori J99]
          Length = 292

 Score =  543 bits (1398), Expect = e-153
 Identities = 274/292 (93%), Positives = 284/292 (96%), Gaps = 1/292 (0%)

Query: 1   MKRRDFIKTTTLGATGAVLGAQILQAEESKGSVAK-YKIEAQYSIDFDSAEHTSLFIPMP 59
           MKRRDFIKTT LGATGAVLGAQILQAEESKGSVAK YKIEA+YSIDFDSAEHTSLFIPMP
Sbjct: 1   MKRRDFIKTTALGATGAVLGAQILQAEESKGSVAKKYKIEAEYSIDFDSAEHTSLFIPMP 60

Query: 60  SVVASNVHLQGNHASYKSMLNFGVPYLQVDFLKSTQKKQVHLSYEIASYQLNERLFETSD 119
           SV ASNVHLQGNHASY+SMLNFGVPYLQV+FLKSTQKK+VHLSYEIASYQLNERLF+ SD
Sbjct: 61  SVAASNVHLQGNHASYESMLNFGVPYLQVEFLKSTQKKRVHLSYEIASYQLNERLFDASD 120

Query: 120 FVAMGRYERDDASVANIANQLKGTTPKESVRNFYAFIKHEMPKRQKALEGKENLPKRESL 179
           FVAMGRYERDDASVANIANQLKG TPKESVRNFYAFIKH+MPKRQKALEGKENLPKR+SL
Sbjct: 121 FVAMGRYERDDASVANIANQLKGATPKESVRNFYAFIKHDMPKRQKALEGKENLPKRDSL 180

Query: 180 PWFATISKESMFVSLCHACGIKSAEVQGLKLGQNSVVKNAPRVEVYLKDSFLAFDFQNNH 239
           PWFATIS+ESMFVSLCHACGIKSAEVQGLKL QNSVV+NA RVEVYLKDS LAFDFQNNH
Sbjct: 181 PWFATISQESMFVSLCHACGIKSAEVQGLKLAQNSVVENASRVEVYLKDSLLAFDFQNNH 240

Query: 240 KEVFIPLNRHKDMQLDSALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 291
           KEVFIPLNRHKDMQLD+ALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV
Sbjct: 241 KEVFIPLNRHKDMQLDTALLATFGDAFALVDGRDLGNYESKLFEKRVSYTIV 292

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,600,170
Number of Sequences: 1026957
Number of extensions: 6450123
Number of successful extensions: 14498
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14493
Number of HSP's gapped (non-prelim): 4
length of query: 291
length of database: 324,149,939
effective HSP length: 120
effective length of query: 171
effective length of database: 200,915,099
effective search space: 34356481929
effective search space used: 34356481929
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 97 (42.0 bits)