BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645497|ref|NP_207672.1| hypothetical protein
[Helicobacter pylori 26695]
         (57 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207672.1|  (NC_000915) hypothetical protein [Helicoba...   120  3e-27
ref|NP_223530.1|  (NC_000921) putative [Helicobacter pylori ...    96  9e-20

>ref|NP_207672.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64629 hypothetical protein HP0878 - Helicobacter pylori (strain 26695)
 gb|AAD07931.1| (AE000597) H. pylori predicted coding region HP0878 [Helicobacter
          pylori 26695]
          Length = 57

 Score =  120 bits (302), Expect = 3e-27
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWDQSYLLLYHPTL 57
          MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWDQSYLLLYHPTL
Sbjct: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEWDQSYLLLYHPTL 57



>ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71886 hypothetical protein jhp0812 - Helicobacter pylori (strain J99)
 gb|AAD06386.1| (AE001510) putative [Helicobacter pylori J99]
          Length = 243

 Score = 95.9 bits (237), Expect = 9e-20
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW 45
          MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW
Sbjct: 1  MKANTIILVDWENFRRDIKQTKCVNYNIALDVIVTIRAFLLDDEW 45



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.327    0.142    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,685,172
Number of Sequences: 1026957
Number of extensions: 974743
Number of successful extensions: 2213
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2211
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 324,149,939
effective HSP length: 33
effective length of query: 24
effective length of database: 290,260,358
effective search space: 6966248592
effective search space used: 6966248592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 91 (39.7 bits)