BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645498|ref|NP_207673.1| hypothetical protein
[Helicobacter pylori 26695]
(202 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207673.1| (NC_000915) hypothetical protein [Helicoba... 398 e-110
ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori ... 390 e-108
ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori ... 74 1e-12
gb|AAM22673.1|AF469113_13 (AF469113) unknown [Helicobacter ... 65 4e-10
ref|NP_645196.1| (NC_003923) conserved hypothetical protein... 65 6e-10
ref|NP_284884.1| (NC_003116) conserved hypothetical protein... 58 7e-08
ref|NP_208126.1| (NC_000915) hypothetical protein [Helicoba... 55 6e-07
ref|NP_207936.1| (NC_000915) hypothetical protein [Helicoba... 50 2e-05
>ref|NP_207673.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64629 hypothetical protein HP0879 - Helicobacter pylori (strain 26695)
gb|AAD07927.1| (AE000597) H. pylori predicted coding region HP0879 [Helicobacter
pylori 26695]
Length = 202
Score = 398 bits (1023), Expect = e-110
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MMNGISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKW 60
MMNGISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKW
Sbjct: 1 MMNGISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKW 60
Query: 61 EKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRI 120
EKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRI
Sbjct: 61 EKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRI 120
Query: 121 AFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSS 180
AFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSS
Sbjct: 121 AFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSS 180
Query: 181 NEVKDKLFSIRENLTKTNWALN 202
NEVKDKLFSIRENLTKTNWALN
Sbjct: 181 NEVKDKLFSIRENLTKTNWALN 202
>ref|NP_223530.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71886 hypothetical protein jhp0812 - Helicobacter pylori (strain J99)
gb|AAD06386.1| (AE001510) putative [Helicobacter pylori J99]
Length = 243
Score = 390 bits (1001), Expect = e-108
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 5 ISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIY 64
ISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIY
Sbjct: 46 ISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIY 105
Query: 65 SDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKK 124
SDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKK
Sbjct: 106 SDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKK 165
Query: 125 IADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVK 184
IADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVK
Sbjct: 166 IADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVK 225
Query: 185 DKLFSIRENLTKTNWALN 202
DKLFSIRENLTKTNWALN
Sbjct: 226 DKLFSIRENLTKTNWALN 243
>ref|NP_223790.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71851 hypothetical protein jhp1073 - Helicobacter pylori (strain J99)
gb|AAD06653.1| (AE001535) putative [Helicobacter pylori J99]
Length = 285
Score = 73.9 bits (180), Expect = 1e-12
Identities = 61/212 (28%), Positives = 100/212 (46%), Gaps = 33/212 (15%)
Query: 5 ISRIYFYTTPPF-DFEHALWDKRNDTLQN--EKNPGTEMKIFTSSDIEEILQSSEATKWE 61
+ RIYFY + PF + E + + + L+ EKNP + EE + S
Sbjct: 78 LKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNP---------KEYEEKVNKSGI---- 124
Query: 62 KIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLE-----------QKQVD 110
+++F H +A +QV+LR+GR + + D LE QKQ+D
Sbjct: 125 -----IQSFNHAIAQQNQVKLRVGRVRFMFKDMPKDQRVHGGLEAEILIPHLELRQKQID 179
Query: 111 MLMGLDIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKY 170
L+ DI ++ K +++FSKDTD +P L+ A ++G V IA++ + + DLK
Sbjct: 180 ALLAHDITKLYCTKPLGCVVLFSKDTDFVPVLEAAWEKGFEVFIANIQESPNSVPSDLK- 238
Query: 171 NSDKVRKLSSNEVKDKLFSIRENLTKTNWALN 202
S VR+ + E+ D L + K N++ N
Sbjct: 239 KSCNVRERNVAEIVDNLPKNQYTPKKKNFSPN 270
>gb|AAM22673.1|AF469113_13 (AF469113) unknown [Helicobacter pylori]
Length = 197
Score = 65.5 bits (158), Expect = 4e-10
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 66 DVENFQHDLASLDQVELRLGR-TKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQRIAFKK 124
D+ NF L L+ LRLG+ K + V QKQVDML+G+D+ I+ K
Sbjct: 80 DILNFLSTLECLNHTALRLGKLVKRGDVEV-----------QKQVDMLLGIDMLEISLKH 128
Query: 125 IADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKVRKLSSNEVK 184
+++++ D+D+ PALKLAR G++ +I + + L + D ++K+ ++
Sbjct: 129 FVEKVVLIGYDSDMSPALKLARTNGIQTEIILFEDLKQKIEPSLTKHCDFIKKVRIEDIY 188
Query: 185 DKLFSIR 191
+KL I+
Sbjct: 189 NKLNLIK 195
>ref|NP_645196.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94244.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 229
Score = 64.7 bits (156), Expect = 6e-10
Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 22/170 (12%)
Query: 3 NGISRIYFYTTPPFD--FEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSE-ATK 59
N + RI++Y PP D H L K+N N T+ K +T +E+ + + A +
Sbjct: 52 NKLYRIFYYDCPPIDKIVYHPLL-KKNVNFSN-----TDTKKWTEDFFKEMSKKRKVALR 105
Query: 60 WEKI--YSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDI 117
++ YS N ++ + +L G LN ++ + + L+QK VDM +GLDI
Sbjct: 106 LGELSEYSVECNLKYSITK----KLLNGSIDLNDLK---EKDFSLSLQQKGVDMKIGLDI 158
Query: 118 QRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDI----ADLSNRLSL 163
++FK D+I++ + D+D +PA KLAR EG+ + AD+ N LSL
Sbjct: 159 ASLSFKHQVDKIILIAGDSDFVPAAKLARTEGIDFVLDSLGADIRNNLSL 208
>ref|NP_284884.1| (NC_003116) conserved hypothetical protein [Neisseria meningitidis
Z2491]
pir||D81792 conserved hypothetical protein NMA2192 [imported] - Neisseria
meningitidis (group A strain Z2491)
emb|CAB72032.1| (AJ391261) hypothetical protein [Neisseria meningitidis]
emb|CAB85404.1| (AL162758) conserved hypothetical protein [Neisseria meningitidis
Z2491]
Length = 219
Score = 57.8 bits (138), Expect = 7e-08
Identities = 45/152 (29%), Positives = 73/152 (47%), Gaps = 17/152 (11%)
Query: 2 MNGISRIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQ---SSEAT 58
M+ + RI+FY PF+ + NP + I S E I + +E
Sbjct: 53 MDDLYRIFFYDCVPFE-------------KKMHNPVSHRAIDFSKTPEAIFRCNLHTELK 99
Query: 59 KWEKIYSDVENFQHDLASLDQVELRLGRTKLNAIRVEFDGSYRALLEQKQVDMLMGLDIQ 118
K K+ + + A + + ++ K + ++ + ++QK VDM +GLDI
Sbjct: 100 KKRKLALRLGKLSDNTAWILKPQVMKNLLKNPSTQIT-ENDVVLDVKQKGVDMRIGLDIS 158
Query: 119 RIAFKKIADRILIFSKDTDLIPALKLARDEGL 150
I KK AD+I++FS D+D +PA KLAR EG+
Sbjct: 159 SITLKKQADKIILFSGDSDFVPAAKLARREGI 190
>ref|NP_208126.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64686 hypothetical protein HP1334 - Helicobacter pylori (strain 26695)
gb|AAD08389.1| (AE000635) H. pylori predicted coding region HP1334 [Helicobacter
pylori 26695]
Length = 224
Score = 54.7 bits (130), Expect = 6e-07
Identities = 48/168 (28%), Positives = 81/168 (47%), Gaps = 12/168 (7%)
Query: 7 RIYFYTTPPFDFEHALWDKRNDTLQNEKNPGTEMKIFTSSDIEEILQSSEATKWEKIYSD 66
RI+FY P + A + L K+P + ++ E L S Y D
Sbjct: 56 RIFFYDCKPLK-KKAHYPYTQKALDLSKSPTYRER----EELHEHLISKPCLALRLGYLD 110
Query: 67 VENFQHDLASLDQVELRLGRTKLNAIRVEFDGS-YRALLEQKQVDMLMGLDIQRIAFKKI 125
+N + + ++ E +L +++ + D Y A +QK VD+ +GLDI +A KK+
Sbjct: 111 EKNARWVIRDQEK-EKKLFNRRISIEEFQNDDFIYHA--KQKGVDIKIGLDIATLALKKL 167
Query: 126 ADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSD 173
+I++ S D+D +PA KLAR EG+ + + N + +DLK + D
Sbjct: 168 VQKIVLISGDSDFVPASKLARVEGIIFTLDPMGNH---IREDLKEHID 212
>ref|NP_207936.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64663 hypothetical protein HP1145 - Helicobacter pylori (strain 26695)
gb|AAD08200.1| (AE000621) H. pylori predicted coding region HP1145 [Helicobacter
pylori 26695]
Length = 103
Score = 49.7 bits (117), Expect = 2e-05
Identities = 30/87 (34%), Positives = 49/87 (55%), Gaps = 1/87 (1%)
Query: 116 DIQRIAFKKIADRILIFSKDTDLIPALKLARDEGLRVDIADLSNRLSLLSQDLKYNSDKV 175
DI ++ + K +++FSKDTDL+P L+ A ++G V IA++ + + DLK S V
Sbjct: 3 DITKLCYTKPLGCVVLFSKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLK-KSCNV 61
Query: 176 RKLSSNEVKDKLFSIRENLTKTNWALN 202
R+ S E+ D L + K N++ N
Sbjct: 62 RERSVAEIVDNLPKNQHTPKKKNFSTN 88
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.135 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,429,432
Number of Sequences: 1026957
Number of extensions: 4311382
Number of successful extensions: 13206
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13193
Number of HSP's gapped (non-prelim): 10
length of query: 202
length of database: 324,149,939
effective HSP length: 115
effective length of query: 87
effective length of database: 206,049,884
effective search space: 17926339908
effective search space used: 17926339908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 94 (40.8 bits)