BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645499|ref|NP_207674.1| hypothetical protein
[Helicobacter pylori 26695]
(140 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207674.1| (NC_000915) hypothetical protein [Helicoba... 275 5e-74
ref|NP_208229.1| (NC_000915) conserved hypothetical lipopro... 49 9e-06
gb|EAA10144.1| (AAAB01008944) agCP15288 [Anopheles gambiae ... 40 0.003
ref|NP_001804.1| (NM_001813) centromere protein E; Centrome... 40 0.006
ref|XP_011195.6| (XM_011195) similar to CENTROMERIC PROTEIN... 40 0.006
prf||1819485A CENP-E protein [Homo sapiens] 40 0.006
gb|AAG23743.1|AF232244_1 (AF232244) integrase-like protein ... 39 0.010
ref|NP_561663.1| (NC_003366) hypothetical protein [Clostrid... 39 0.010
gb|AAG23744.1|AF232245_1 (AF232245) integrase-like protein ... 39 0.010
>ref|NP_207674.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64629 hypothetical protein HP0880 - Helicobacter pylori (strain 26695)
gb|AAD07928.1| (AE000597) H. pylori predicted coding region HP0880 [Helicobacter
pylori 26695]
Length = 140
Score = 275 bits (704), Expect = 5e-74
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MKTSAKVLLTLLIVISLGKGLNSLISAWRGKDDAIPIETRLHKNKLTIISKTDSIEIQDI 60
MKTSAKVLLTLLIVISLGKGLNSLISAWRGKDDAIPIETRLHKNKLTIISKTDSIEIQDI
Sbjct: 1 MKTSAKVLLTLLIVISLGKGLNSLISAWRGKDDAIPIETRLHKNKLTIISKTDSIEIQDI 60
Query: 61 QFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIAN 120
QFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIAN
Sbjct: 61 QFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIAN 120
Query: 121 FQKYYKDIKDIDDYSALMAQ 140
FQKYYKDIKDIDDYSALMAQ
Sbjct: 121 FQKYYKDIKDIDDYSALMAQ 140
>ref|NP_208229.1| (NC_000915) conserved hypothetical lipoprotein [Helicobacter pylori
26695]
pir||F64699 conserved hypothetical lipoprotein HP1438 - Helicobacter pylori
(strain 26695)
gb|AAD08478.1| (AE000644) conserved hypothetical lipoprotein [Helicobacter pylori
26695]
Length = 338
Score = 48.9 bits (115), Expect = 9e-06
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 17 LGKGLNSLISAWRGKDDAIP---IETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTS 73
LG +L A G D + P IE + + IISKTD+IEIQD++ NR NC H
Sbjct: 10 LGASCLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHD--- 66
Query: 74 KDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDI 128
+ + +L +E ++ +K I+ +Q KIA QK +++
Sbjct: 67 -------------QNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEEL 108
>gb|EAA10144.1| (AAAB01008944) agCP15288 [Anopheles gambiae str. PEST]
Length = 1842
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/85 (25%), Positives = 49/85 (56%), Gaps = 1/85 (1%)
Query: 29 RGKDDAIP-IETRLHKNKLTIISKTDSIEIQDIQFNRENCSHTYTSKDLEKIQKDLEELE 87
R ++D I +E ++ + T+ + S + +IQ E HT T +DLEK++K+ +L+
Sbjct: 990 RKQNDKIKTLEDKITRVNTTMKTAESSKSLLEIQLKAEKEKHTGTERDLEKVRKEKTKLD 1049
Query: 88 EGVPELFEELERDEESIAKNKKTIQ 112
+ +L +EL+ +++ K++++
Sbjct: 1050 NRISDLEKELQLSKKNAELIKESLE 1074
>ref|NP_001804.1| (NM_001813) centromere protein E; Centromere autoantigen E (312kD)
[Homo sapiens]
sp|Q02224|CENE_HUMAN CENTROMERIC PROTEIN E (CENP-E PROTEIN)
pir||S28261 centromere protein E - human
emb|CAA78727.1| (Z15005) CENP-E [Homo sapiens]
Length = 2663
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
L +QKDLE + E +EL+ +E + KK + E Q K++ ++ K IKD
Sbjct: 1804 LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD 1858
>ref|XP_011195.6| (XM_011195) similar to CENTROMERIC PROTEIN E (CENP-E PROTEIN) [Homo
sapiens]
Length = 2665
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
L +QKDLE + E +EL+ +E + KK + E Q K++ ++ K IKD
Sbjct: 1804 LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD 1858
>prf||1819485A CENP-E protein [Homo sapiens]
Length = 2663
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 76 LEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQKYYKDIKD 130
L +QKDLE + E +EL+ +E + KK + E Q K++ ++ K IKD
Sbjct: 1804 LSNMQKDLENSNAKLQEKIQELKANEHQLITLKKDVNETQKKVSEMEQLKKQIKD 1858
>gb|AAG23743.1|AF232244_1 (AF232244) integrase-like protein [Tetrahymena thermophila]
Length = 666
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 57 IQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQN 116
I DIQ + + K ++++K + + ++ + E+++ +++ K+K IQE
Sbjct: 436 IDDIQLDEKEQPFNLKKKQGKQLKKAIHQRKDQIKAQTEQIDEYIKNLEKSKLQIQEENE 495
Query: 117 KIANFQKYYKDIKDIDDYS 135
KI N + +Y D+ +D+YS
Sbjct: 496 KIKNLEIFYADL--VDNYS 512
>ref|NP_561663.1| (NC_003366) hypothetical protein [Clostridium perfringens]
dbj|BAB80453.1| (AP003188) hypothetical protein [Clostridium perfringens]
Length = 1132
Score = 38.9 bits (89), Expect = 0.010
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 63 NRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQNKIANFQ 122
N + Y+++++E++++ EE ++ + +EEL +E+ + +K +QE + ++A +
Sbjct: 235 NNKYLEDLYSNREVERVEEIKEEAKKEFNKAYEELNENEKLLLDKEKELQEGKAQLAEGK 294
Query: 123 KYYKDIK 129
K Y D K
Sbjct: 295 KQYSDKK 301
>gb|AAG23744.1|AF232245_1 (AF232245) integrase-like protein [Tetrahymena thermophila]
Length = 667
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 57 IQDIQFNRENCSHTYTSKDLEKIQKDLEELEEGVPELFEELERDEESIAKNKKTIQEYQN 116
I DIQ + + K ++++K + + ++ + E+++ +++ K+K IQE
Sbjct: 436 IDDIQLDEKEQPFNLKKKQGKQLKKAIHQRKDQIKAQTEQIDEYIKNLEKSKLQIQEENE 495
Query: 117 KIANFQKYYKDIKDIDDYS 135
KI N + +Y D+ +D+YS
Sbjct: 496 KIQNLEIFYADL--VDNYS 512
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.312 0.132 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,520,211
Number of Sequences: 1026957
Number of extensions: 3291098
Number of successful extensions: 26730
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26686
Number of HSP's gapped (non-prelim): 39
length of query: 140
length of database: 324,149,939
effective HSP length: 116
effective length of query: 24
effective length of database: 205,022,927
effective search space: 4920550248
effective search space used: 4920550248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 89 (38.9 bits)